Wall clock time and date at job start Tue Mar 31 2020 05:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99647 * 2 1 4 4 H 1.48501 * 109.46874 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47200 * 299.99533 * 3 2 1 6 6 H 1.48492 * 109.47361 * 59.99850 * 3 2 1 7 7 C 1.37875 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00144 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99743 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46813 * 180.02562 * 9 7 2 11 11 S 1.81007 * 109.46895 * 180.02562 * 10 9 7 12 12 C 1.76207 * 99.99756 * 179.97438 * 11 10 9 13 13 N 1.31175 * 125.08033 * 359.97392 * 12 11 10 14 14 C 1.35669 * 109.75040 * 180.02562 * 13 12 11 15 15 N 1.33124 * 133.10989 * 180.02562 * 14 13 12 16 16 C 1.31643 * 121.54580 * 180.02562 * 15 14 13 17 17 C 1.38549 * 121.37449 * 359.97438 * 16 15 14 18 18 Cl 1.73596 * 120.28295 * 180.02562 * 17 16 15 19 19 C 1.38709 * 119.43175 * 0.24130 * 17 16 15 20 20 C 1.38668 * 118.22390 * 359.53464 * 19 17 16 21 21 N 1.36576 * 125.07600 * 179.97438 * 12 11 10 22 22 H 0.96998 * 126.44526 * 359.94363 * 21 12 11 23 23 H 0.97006 * 120.00247 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47069 * 59.99995 * 9 7 2 25 25 H 1.09006 * 109.47238 * 299.99873 * 9 7 2 26 26 H 1.08998 * 109.47381 * 60.00095 * 10 9 7 27 27 H 1.08996 * 109.47500 * 299.99763 * 10 9 7 28 28 H 1.08002 * 119.31056 * 180.02562 * 16 15 14 29 29 H 1.08001 * 120.88697 * 179.72666 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 16 1.3403 -5.2296 0.0011 12 6 2.6902 -6.3621 0.0020 13 7 3.9577 -6.0243 0.0024 14 6 4.7295 -7.1401 0.0025 15 7 6.0463 -7.3354 0.0033 16 6 6.5630 -8.5462 0.0027 17 6 5.7581 -9.6740 0.0017 18 17 6.4697 -11.2574 0.0015 19 6 4.3788 -9.5269 -0.0038 20 6 3.8562 -8.2425 0.0019 21 7 2.5730 -7.7229 0.0023 22 1 1.7462 -8.2300 0.0028 23 1 -0.4851 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8713 -3.6039 0.8922 27 1 2.8726 -3.6047 -0.8877 28 1 7.6367 -8.6629 0.0038 29 1 3.7293 -10.3898 -0.0091 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066318307.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:52 Heat of formation + Delta-G solvation = 47.605014 kcal Electronic energy + Delta-G solvation = -16193.417865 eV Core-core repulsion = 13268.351805 eV Total energy + Delta-G solvation = -2925.066060 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.024 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.40231 -39.59505 -37.57321 -35.83402 -34.76820 -33.00705 -32.34681 -30.86988 -27.41230 -25.69233 -24.35913 -23.23519 -22.91324 -19.93981 -19.05887 -18.68819 -18.04723 -17.09444 -17.04781 -16.51475 -16.14706 -15.63833 -15.28884 -14.87088 -14.51333 -14.19154 -14.08565 -13.66852 -13.12799 -12.98438 -12.50488 -12.41378 -12.35007 -11.99006 -11.95697 -11.92779 -11.71918 -11.19692 -10.60097 -10.45965 -10.28465 -10.04451 -8.73067 -8.23809 -6.35064 -0.62583 -0.13680 0.00864 0.80032 1.00824 1.19060 1.41989 1.43524 1.56597 1.85937 2.41819 2.57828 2.80281 3.10697 3.30332 3.61137 3.78138 3.86269 4.20784 4.33176 4.45265 4.54250 4.77670 4.84794 5.13835 5.37417 5.45740 5.73477 5.90160 6.11904 6.24299 6.77409 6.78872 7.34120 8.87800 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.040921 B = 0.003007 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.086454 B = 9310.566383 C = 9974.205572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.041 3.959 10 C -0.071 4.071 11 S 0.023 5.977 12 C 0.292 3.708 13 N -0.525 5.525 14 C 0.228 3.772 15 N -0.470 5.470 16 C 0.139 3.861 17 C -0.082 4.082 18 Cl -0.025 7.025 19 C -0.034 4.034 20 C 0.007 3.993 21 N -0.558 5.558 22 H 0.449 0.551 23 H 0.267 0.733 24 H 0.012 0.988 25 H 0.012 0.988 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.201 0.799 29 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.553 -24.348 -0.007 25.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.001 3.999 10 C -0.220 4.220 11 S 0.256 5.744 12 C -0.085 4.085 13 N -0.252 5.252 14 C -0.016 4.016 15 N -0.181 5.181 16 C -0.032 4.032 17 C -0.114 4.114 18 Cl 0.003 6.997 19 C -0.063 4.063 20 C -0.109 4.109 21 N -0.175 5.175 22 H 0.293 0.707 23 H 0.075 0.925 24 H 0.030 0.970 25 H 0.030 0.970 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.217 0.783 29 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 7.096 -22.950 -0.006 24.022 hybrid contribution 0.341 -0.442 0.001 0.559 sum 7.438 -23.392 -0.005 24.546 Atomic orbital electron populations 1.70069 1.07559 1.28029 1.50950 1.25866 0.95771 1.03018 0.94359 0.85388 0.78967 0.78736 0.77921 1.18968 1.20181 1.20194 1.21490 0.93601 0.91342 1.51583 0.92066 1.18787 0.93537 0.90696 0.96847 1.23612 1.00955 0.91753 1.05637 1.85605 1.01087 0.97063 1.90607 1.25939 0.97293 0.86487 0.98811 1.70866 0.99670 1.28488 1.26208 1.19912 0.90355 0.88965 1.02383 1.67007 1.10957 1.25774 1.14398 1.23190 1.01928 0.83978 0.94073 1.21636 0.93128 0.88914 1.07693 1.98397 1.82976 1.21519 1.96764 1.20545 0.94062 0.94285 0.97458 1.19680 0.86113 0.96427 1.08680 1.42677 1.07726 1.04802 1.62299 0.70687 0.92455 0.96998 0.97008 0.89955 0.89962 0.78280 0.79947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.44 13.29 21.45 0.28 -54.16 15 2 C 0.01 0.50 5.46 84.65 0.46 0.96 15 3 Si 0.97 43.75 29.54 68.60 2.03 45.77 15 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 15 7 C -0.54 -30.16 9.11 25.60 0.23 -29.93 15 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 15 9 C 0.04 2.05 4.98 29.85 0.15 2.20 15 10 C -0.07 -2.95 5.09 71.98 0.37 -2.58 15 11 S 0.02 0.76 22.31 -56.49 -1.26 -0.50 15 12 C 0.29 9.04 8.20 179.57 1.47 10.51 15 13 N -0.52 -19.51 10.56 -193.24 -2.04 -21.55 15 14 C 0.23 7.48 8.36 134.32 1.12 8.60 15 15 N -0.47 -14.39 10.42 -193.92 -2.02 -16.41 15 16 C 0.14 2.88 10.95 84.80 0.93 3.80 15 17 C -0.08 -1.37 6.34 22.46 0.14 -1.23 15 18 Cl -0.03 -0.32 28.98 -2.72 -0.08 -0.39 15 19 C -0.03 -0.56 9.99 22.49 0.22 -0.34 15 20 C 0.01 0.16 7.31 38.79 0.28 0.44 15 21 N -0.56 -12.50 6.28 -187.23 -1.18 -13.67 15 22 H 0.45 6.18 8.96 -92.71 -0.83 5.35 15 23 H 0.27 14.66 8.31 -92.70 -0.77 13.88 15 24 H 0.01 0.62 8.14 -2.39 -0.02 0.60 15 25 H 0.01 0.62 8.14 -2.38 -0.02 0.60 15 26 H 0.08 3.52 8.14 -2.40 -0.02 3.50 15 27 H 0.08 3.52 8.14 -2.40 -0.02 3.50 15 28 H 0.20 2.75 8.06 -2.91 -0.02 2.73 15 29 H 0.18 1.61 8.06 -2.91 -0.02 1.59 15 Total: -1.00 -68.81 292.18 1.49 -67.31 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: 0.37 Total: 1.17 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 5.39 Total: -7.56 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -4.95 Total: -105.80 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -1.26 Total: -0.50 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.08 Total: -0.39 kcal Total: -68.81 1.49 -67.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066318307.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.917 kcal (2) G-P(sol) polarization free energy of solvation -68.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds