Wall clock time and date at job start Tue Mar 31 2020 05:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31380 * 1 3 3 Si 1.86792 * 120.00466 * 2 1 4 4 H 1.48502 * 109.47158 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47238 * 119.99880 * 3 2 1 6 6 H 1.48498 * 109.47129 * 239.99883 * 3 2 1 7 7 C 1.39029 * 119.99425 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00011 * 176.95568 * 7 2 1 9 9 N 1.36898 * 120.00341 * 356.95800 * 7 2 1 10 10 C 1.34775 * 120.00478 * 131.39396 * 9 7 2 11 11 O 1.21610 * 120.00319 * 188.11000 * 10 9 7 12 12 C 1.47542 * 119.99718 * 8.10772 * 10 9 7 13 13 C 1.39758 * 120.13518 * 321.58463 * 12 10 9 14 14 C 1.37766 * 119.88788 * 180.02562 * 13 12 10 15 15 C 1.38730 * 120.15790 * 359.97438 * 14 13 12 16 16 F 1.35103 * 119.86029 * 180.02562 * 15 14 13 17 17 C 1.38576 * 120.27633 * 0.02562 * 15 14 13 18 18 C 1.38008 * 120.11274 * 359.67708 * 17 15 14 19 19 Cl 1.73599 * 120.08659 * 180.32149 * 18 17 15 20 20 C 1.46503 * 119.99670 * 311.39386 * 9 7 2 21 21 C 1.52997 * 117.50122 * 349.60358 * 20 9 7 22 22 C 1.53001 * 117.49861 * 280.94081 * 20 9 7 23 23 H 0.97006 * 119.99289 * 355.02418 * 1 2 3 24 24 H 1.08001 * 120.06203 * 0.02562 * 13 12 10 25 25 H 1.07999 * 119.92276 * 180.02562 * 14 13 12 26 26 H 1.08002 * 119.94300 * 179.97438 * 17 15 14 27 27 H 1.09007 * 115.54598 * 135.27348 * 20 9 7 28 28 H 1.09008 * 117.49651 * 359.97438 * 21 20 9 29 29 H 1.08994 * 117.50076 * 145.02118 * 21 20 9 30 30 H 1.08996 * 117.49903 * 214.98165 * 22 20 9 31 31 H 1.08996 * 117.49757 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6176 0.0000 4 1 1.2830 2.7464 -0.0006 5 1 3.1016 1.6962 1.2125 6 1 3.1017 1.6962 -1.2125 7 6 2.0088 -1.2041 0.0005 8 1 3.0877 -1.2049 -0.0491 9 7 1.3257 -2.3888 0.0640 10 6 1.6171 -3.3818 -0.7994 11 8 0.9166 -4.3750 -0.8426 12 6 2.7858 -3.2639 -1.6922 13 6 3.1072 -2.0317 -2.2682 14 6 4.1993 -1.9275 -3.1014 15 6 4.9805 -3.0423 -3.3694 16 9 6.0504 -2.9331 -4.1871 17 6 4.6678 -4.2672 -2.8019 18 6 3.5800 -4.3831 -1.9606 19 17 3.1938 -5.9162 -1.2435 20 6 0.2780 -2.5771 1.0705 21 6 0.1571 -1.5208 2.1707 22 6 0.7203 -2.9061 2.4977 23 1 -0.4849 0.8370 0.0729 24 1 2.5006 -1.1627 -2.0604 25 1 4.4485 -0.9756 -3.5465 26 1 5.2794 -5.1316 -3.0145 27 1 -0.6427 -3.0364 0.7104 28 1 0.8575 -0.6859 2.1459 29 1 -0.8429 -1.2854 2.5347 30 1 0.0906 -3.5815 3.0767 31 1 1.7909 -2.9828 2.6877 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067686905.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:53 Heat of formation + Delta-G solvation = -17.788924 kcal Electronic energy + Delta-G solvation = -20086.340889 eV Core-core repulsion = 16695.766302 eV Total energy + Delta-G solvation = -3390.574587 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.76927 -39.51253 -37.80658 -36.03462 -35.90206 -33.33730 -31.61269 -30.57000 -29.90638 -25.29276 -23.53729 -22.65226 -21.34471 -20.90713 -19.44729 -17.78356 -17.12597 -16.56950 -15.91756 -15.45782 -15.14312 -14.88610 -14.39547 -14.04036 -13.75317 -13.46066 -13.32807 -12.85807 -12.53515 -12.24682 -12.07461 -11.49890 -11.30474 -11.00029 -10.91794 -10.86099 -10.55796 -10.48111 -10.45401 -9.73792 -9.29312 -8.88572 -8.69300 -8.57310 -8.27677 -7.43961 -6.45304 -4.33122 1.13721 1.42848 2.45910 3.01254 3.10391 3.10856 3.46764 3.92650 4.11186 4.43071 4.52491 4.78174 5.00825 5.11901 5.21479 5.51674 5.60615 5.87017 6.00202 6.12541 6.15017 6.17427 6.37271 6.49082 6.57917 6.69426 6.85344 7.03509 7.06494 7.25988 7.28882 7.90892 8.21413 8.87798 9.31471 9.76713 10.53043 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.008191 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.522511 B = 3417.508999 C = 4892.958325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.053 3.947 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.355 4.355 8 H 0.088 0.912 9 N -0.408 5.408 10 C 0.523 3.477 11 O -0.572 6.572 12 C -0.094 4.094 13 C -0.027 4.027 14 C -0.170 4.170 15 C 0.111 3.889 16 F -0.140 7.140 17 C -0.168 4.168 18 C 0.023 3.977 19 Cl -0.044 7.044 20 C 0.121 3.879 21 C -0.127 4.127 22 C -0.223 4.223 23 H 0.272 0.728 24 H 0.175 0.825 25 H 0.138 0.862 26 H 0.141 0.859 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.328 -1.537 -2.132 6.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.156 4.156 3 Si 0.731 3.269 4 H -0.206 1.206 5 H -0.196 1.196 6 H -0.192 1.192 7 C -0.483 4.483 8 H 0.106 0.894 9 N -0.126 5.126 10 C 0.311 3.689 11 O -0.456 6.456 12 C -0.098 4.098 13 C -0.045 4.045 14 C -0.189 4.189 15 C 0.091 3.909 16 F -0.119 7.119 17 C -0.188 4.188 18 C -0.006 4.006 19 Cl -0.015 7.015 20 C 0.016 3.984 21 C -0.165 4.165 22 C -0.262 4.262 23 H 0.083 0.917 24 H 0.193 0.807 25 H 0.156 0.844 26 H 0.159 0.841 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.762 -2.005 -2.156 6.470 hybrid contribution 0.675 0.897 0.013 1.123 sum 6.437 -1.107 -2.143 6.874 Atomic orbital electron populations 1.69953 1.05925 1.28195 1.43481 1.25502 0.95342 0.99404 0.95370 0.86338 0.79510 0.81481 0.79600 1.20593 1.19557 1.19210 1.19299 0.91445 0.82619 1.54974 0.89428 1.42632 1.32109 1.12086 1.25735 1.17946 0.85208 0.84732 0.81011 1.90690 1.51771 1.32641 1.70498 1.20057 0.97213 0.92264 1.00293 1.22077 0.94344 0.98092 0.89994 1.21266 0.97455 0.98104 1.02121 1.17645 0.86048 0.94327 0.92834 1.91478 1.53457 1.96782 1.70195 1.20699 0.99416 0.97566 1.01091 1.20661 0.95215 0.87849 0.96832 1.98378 1.93757 1.27459 1.81895 1.21001 0.92374 1.02158 0.82892 1.22802 1.00782 0.92140 1.00751 1.23443 1.00696 1.00724 1.01357 0.91727 0.80745 0.84370 0.84123 0.88186 0.87902 0.90500 0.90294 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.21 10.85 55.50 0.60 -19.61 16 2 C 0.05 1.20 3.61 -17.45 -0.06 1.13 16 3 Si 0.91 17.58 29.56 -169.99 -5.02 12.56 16 4 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 6 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.36 -8.16 5.40 -15.00 -0.08 -8.24 16 8 H 0.09 1.96 6.69 -52.49 -0.35 1.61 16 9 N -0.41 -9.76 2.79 -108.89 -0.30 -10.06 16 10 C 0.52 12.48 7.01 -12.47 -0.09 12.39 16 11 O -0.57 -14.78 15.18 5.27 0.08 -14.70 16 12 C -0.09 -1.95 5.45 -104.94 -0.57 -2.52 16 13 C -0.03 -0.50 7.87 -39.19 -0.31 -0.80 16 14 C -0.17 -2.69 10.01 -39.57 -0.40 -3.09 16 15 C 0.11 1.73 7.31 -39.28 -0.29 1.44 16 16 F -0.14 -2.07 17.26 2.25 0.04 -2.03 16 17 C -0.17 -2.66 9.79 -39.54 -0.39 -3.04 16 18 C 0.02 0.42 6.33 -39.07 -0.25 0.17 16 19 Cl -0.04 -0.81 26.78 -51.86 -1.39 -2.20 16 20 C 0.12 2.79 5.05 -67.93 -0.34 2.44 16 21 C -0.13 -2.67 7.98 -26.69 -0.21 -2.88 16 22 C -0.22 -4.50 10.46 -26.69 -0.28 -4.77 16 23 H 0.27 6.25 8.32 -40.82 -0.34 5.91 16 24 H 0.18 3.45 5.72 -52.49 -0.30 3.15 16 25 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 26 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 27 H 0.10 2.42 8.03 -51.93 -0.42 2.01 16 28 H 0.10 2.30 5.90 -51.92 -0.31 1.99 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 285.22 15.07 4.30 4.30 Total: -1.00 -25.68 285.22 -7.59 -33.27 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -2.62 Total: 6.25 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -3.27 Total: -7.77 kcal Atomic # 7 Polarization: -29.97 SS G_CDS: 0.30 Total: -29.67 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.08 Total: -14.70 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.02 Total: 12.56 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.39 Total: -2.20 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -25.68 -7.59 -33.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686905.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.481 kcal (2) G-P(sol) polarization free energy of solvation -25.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds