Wall clock time and date at job start Tue Mar 31 2020 05:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31380 * 1 3 3 Si 1.86792 * 120.00466 * 2 1 4 4 H 1.48502 * 109.47158 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47238 * 119.99880 * 3 2 1 6 6 H 1.48498 * 109.47129 * 239.99883 * 3 2 1 7 7 C 1.39029 * 119.99425 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00011 * 176.95568 * 7 2 1 9 9 N 1.36898 * 120.00341 * 356.95800 * 7 2 1 10 10 C 1.34775 * 120.00478 * 131.39396 * 9 7 2 11 11 O 1.21610 * 120.00319 * 188.11000 * 10 9 7 12 12 C 1.47542 * 119.99718 * 8.10772 * 10 9 7 13 13 C 1.39758 * 120.13518 * 321.58463 * 12 10 9 14 14 C 1.37766 * 119.88788 * 180.02562 * 13 12 10 15 15 C 1.38730 * 120.15790 * 359.97438 * 14 13 12 16 16 F 1.35103 * 119.86029 * 180.02562 * 15 14 13 17 17 C 1.38576 * 120.27633 * 0.02562 * 15 14 13 18 18 C 1.38008 * 120.11274 * 359.67708 * 17 15 14 19 19 Cl 1.73599 * 120.08659 * 180.32149 * 18 17 15 20 20 C 1.46503 * 119.99670 * 311.39386 * 9 7 2 21 21 C 1.52997 * 117.50122 * 349.60358 * 20 9 7 22 22 C 1.53001 * 117.49861 * 280.94081 * 20 9 7 23 23 H 0.97006 * 119.99289 * 355.02418 * 1 2 3 24 24 H 1.08001 * 120.06203 * 0.02562 * 13 12 10 25 25 H 1.07999 * 119.92276 * 180.02562 * 14 13 12 26 26 H 1.08002 * 119.94300 * 179.97438 * 17 15 14 27 27 H 1.09007 * 115.54598 * 135.27348 * 20 9 7 28 28 H 1.09008 * 117.49651 * 359.97438 * 21 20 9 29 29 H 1.08994 * 117.50076 * 145.02118 * 21 20 9 30 30 H 1.08996 * 117.49903 * 214.98165 * 22 20 9 31 31 H 1.08996 * 117.49757 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6176 0.0000 4 1 1.2830 2.7464 -0.0006 5 1 3.1016 1.6962 1.2125 6 1 3.1017 1.6962 -1.2125 7 6 2.0088 -1.2041 0.0005 8 1 3.0877 -1.2049 -0.0491 9 7 1.3257 -2.3888 0.0640 10 6 1.6171 -3.3818 -0.7994 11 8 0.9166 -4.3750 -0.8426 12 6 2.7858 -3.2639 -1.6922 13 6 3.1072 -2.0317 -2.2682 14 6 4.1993 -1.9275 -3.1014 15 6 4.9805 -3.0423 -3.3694 16 9 6.0504 -2.9331 -4.1871 17 6 4.6678 -4.2672 -2.8019 18 6 3.5800 -4.3831 -1.9606 19 17 3.1938 -5.9162 -1.2435 20 6 0.2780 -2.5771 1.0705 21 6 0.1571 -1.5208 2.1707 22 6 0.7203 -2.9061 2.4977 23 1 -0.4849 0.8370 0.0729 24 1 2.5006 -1.1627 -2.0604 25 1 4.4485 -0.9756 -3.5465 26 1 5.2794 -5.1316 -3.0145 27 1 -0.6427 -3.0364 0.7104 28 1 0.8575 -0.6859 2.1459 29 1 -0.8429 -1.2854 2.5347 30 1 0.0906 -3.5815 3.0767 31 1 1.7909 -2.9828 2.6877 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067686905.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:53 Heat of formation + Delta-G solvation = -29.764374 kcal Electronic energy + Delta-G solvation = -20086.860183 eV Core-core repulsion = 16695.766302 eV Total energy + Delta-G solvation = -3391.093881 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.99487 -41.12845 -39.35143 -37.74066 -37.38381 -35.06385 -33.36606 -31.94773 -31.35826 -27.07094 -25.06502 -24.02298 -22.99476 -22.53149 -21.18757 -19.31362 -18.55770 -18.16425 -17.41996 -16.84390 -16.69594 -16.50928 -15.79581 -15.71564 -15.31865 -14.96795 -14.74585 -14.31626 -14.06839 -13.78363 -13.75174 -13.18731 -12.85155 -12.69340 -12.30557 -12.27974 -12.14048 -12.06623 -11.93741 -11.44467 -11.02470 -10.62452 -10.40690 -9.98411 -9.69744 -9.23260 -8.19125 -6.12749 -0.26984 0.08640 1.05476 1.48507 1.52425 1.59317 1.91581 2.30118 2.54021 2.83439 3.03998 3.18156 3.40033 3.73460 3.94434 4.02446 4.21430 4.25798 4.43488 4.44891 4.51271 4.84835 4.87052 4.90767 5.09978 5.18551 5.30945 5.32575 5.47381 5.55820 5.72220 6.13508 6.43726 7.11207 7.52807 7.99578 8.80132 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.008191 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.522511 B = 3417.508999 C = 4892.958325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.023 3.977 3 Si 0.964 3.036 4 H -0.286 1.286 5 H -0.269 1.269 6 H -0.252 1.252 7 C -0.360 4.360 8 H 0.092 0.908 9 N -0.416 5.416 10 C 0.509 3.491 11 O -0.606 6.606 12 C -0.123 4.123 13 C -0.033 4.033 14 C -0.156 4.156 15 C 0.125 3.875 16 F -0.129 7.129 17 C -0.156 4.156 18 C 0.013 3.987 19 Cl -0.050 7.050 20 C 0.087 3.913 21 C -0.114 4.114 22 C -0.200 4.200 23 H 0.272 0.728 24 H 0.160 0.840 25 H 0.169 0.831 26 H 0.169 0.831 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.409 -0.742 -2.710 8.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.183 4.183 3 Si 0.787 3.213 4 H -0.212 1.212 5 H -0.194 1.194 6 H -0.176 1.176 7 C -0.487 4.487 8 H 0.110 0.890 9 N -0.133 5.133 10 C 0.299 3.701 11 O -0.493 6.493 12 C -0.127 4.127 13 C -0.052 4.052 14 C -0.175 4.175 15 C 0.105 3.895 16 F -0.107 7.107 17 C -0.175 4.175 18 C -0.015 4.015 19 Cl -0.021 7.021 20 C -0.017 4.017 21 C -0.151 4.151 22 C -0.238 4.238 23 H 0.082 0.918 24 H 0.178 0.822 25 H 0.187 0.813 26 H 0.187 0.813 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.864 -1.206 -2.734 8.412 hybrid contribution 0.055 0.611 0.136 0.629 sum 7.919 -0.594 -2.598 8.356 Atomic orbital electron populations 1.70071 1.07334 1.28812 1.44576 1.26125 0.95793 1.01840 0.94553 0.85432 0.78329 0.77511 0.80047 1.21164 1.19438 1.17603 1.19471 0.91613 0.82565 1.55094 0.89045 1.42847 1.32035 1.12541 1.25890 1.18527 0.86005 0.84290 0.81273 1.90639 1.53176 1.33772 1.71676 1.19940 0.97259 0.94063 1.01415 1.21861 0.95336 0.96835 0.91121 1.21460 0.95814 0.99565 1.00621 1.17592 0.85818 0.93972 0.92107 1.91520 1.52801 1.96696 1.69700 1.20928 0.98317 0.98799 0.99438 1.20752 0.95957 0.87152 0.97647 1.98371 1.93941 1.27589 1.82156 1.21045 0.92210 1.04360 0.84130 1.22693 1.01115 0.91848 0.99474 1.23448 1.00946 1.00443 0.98992 0.91827 0.82232 0.81336 0.81331 0.90486 0.89159 0.89341 0.87876 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -42.42 10.85 21.68 0.24 -42.18 16 2 C 0.02 1.04 3.61 84.95 0.31 1.35 16 3 Si 0.96 35.24 29.56 68.60 2.03 37.26 16 4 H -0.29 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 6 H -0.25 -8.55 7.11 99.48 0.71 -7.84 16 7 C -0.36 -16.59 5.40 84.09 0.45 -16.14 16 8 H 0.09 4.07 6.69 -2.91 -0.02 4.05 16 9 N -0.42 -20.36 2.79 -616.68 -1.72 -22.08 16 10 C 0.51 24.96 7.01 86.70 0.61 25.57 16 11 O -0.61 -32.45 15.18 -4.06 -0.06 -32.52 16 12 C -0.12 -5.07 5.45 -20.07 -0.11 -5.18 16 13 C -0.03 -1.19 7.87 22.53 0.18 -1.01 16 14 C -0.16 -4.46 10.01 22.28 0.22 -4.23 16 15 C 0.13 3.44 7.31 22.47 0.16 3.61 16 16 F -0.13 -3.24 17.26 44.97 0.78 -2.46 16 17 C -0.16 -4.49 9.79 22.30 0.22 -4.27 16 18 C 0.01 0.47 6.33 22.60 0.14 0.61 16 19 Cl -0.05 -1.82 26.78 -2.72 -0.07 -1.89 16 20 C 0.09 4.14 5.05 44.99 0.23 4.37 16 21 C -0.11 -4.78 7.98 30.62 0.24 -4.54 16 22 C -0.20 -7.96 10.46 30.62 0.32 -7.64 16 23 H 0.27 12.60 8.32 -92.70 -0.77 11.83 16 24 H 0.16 6.26 5.72 -2.91 -0.02 6.25 16 25 H 0.17 3.77 8.06 -2.91 -0.02 3.74 16 26 H 0.17 3.88 8.06 -2.91 -0.02 3.86 16 27 H 0.08 3.93 8.03 -2.38 -0.02 3.91 16 28 H 0.09 4.04 5.90 -2.38 -0.01 4.02 16 29 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 30 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 31 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -55.65 285.22 5.34 -50.32 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 1.18 Total: 21.05 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 2.98 Total: -7.50 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: -1.49 Total: -64.26 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.06 Total: -32.52 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.78 Total: -2.46 kcal Atomic # 14 Polarization: 35.24 SS G_CDS: 2.03 Total: 37.26 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.07 Total: -1.89 kcal Total: -55.65 5.34 -50.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686905.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.551 kcal (2) G-P(sol) polarization free energy of solvation -55.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds