Wall clock time and date at job start Tue Mar 31 2020 05:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.46715 * 2 1 4 4 C 1.50694 * 109.47452 * 120.00436 * 2 1 3 5 5 C 1.38247 * 119.98736 * 338.24999 * 4 2 1 6 6 C 1.38223 * 120.00816 * 179.76386 * 5 4 2 7 7 C 1.38323 * 119.98696 * 0.51455 * 6 5 4 8 8 Br 1.89098 * 120.00993 * 179.71892 * 7 6 5 9 9 C 1.38325 * 119.98140 * 359.74364 * 7 6 5 10 10 C 1.38215 * 119.99267 * 0.02562 * 9 7 6 11 11 N 1.46500 * 109.47039 * 240.00730 * 2 1 3 12 12 C 1.46502 * 120.00094 * 303.98187 * 11 2 1 13 13 C 1.36942 * 119.99821 * 123.98601 * 11 2 1 14 14 H 1.07999 * 120.00303 * 8.38968 * 13 11 2 15 15 C 1.38817 * 119.99427 * 188.39065 * 13 11 2 16 16 N 1.31609 * 120.00194 * 354.51156 * 15 13 11 17 17 Si 1.86797 * 119.99512 * 174.51356 * 15 13 11 18 18 H 1.48499 * 109.47612 * 59.99897 * 17 15 13 19 19 H 1.48504 * 109.47167 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47374 * 299.99776 * 17 15 13 21 21 H 1.09000 * 109.47138 * 59.99747 * 1 2 3 22 22 H 1.09000 * 109.46309 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46953 * 299.99662 * 1 2 3 24 24 H 1.07998 * 119.99513 * 0.02562 * 5 4 2 25 25 H 1.07998 * 120.00691 * 180.23580 * 6 5 4 26 26 H 1.08006 * 120.00505 * 179.97438 * 9 7 6 27 27 H 1.08000 * 119.99608 * 180.02562 * 10 9 7 28 28 H 1.08999 * 109.46727 * 236.34767 * 12 11 2 29 29 H 1.08997 * 109.46808 * 116.34510 * 12 11 2 30 30 H 1.09003 * 109.46475 * 356.34775 * 12 11 2 31 31 H 0.97006 * 120.00030 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 1.2143 -0.8374 2.3374 6 6 1.6729 -1.4932 3.4644 7 6 2.9545 -2.0132 3.4882 8 35 3.5854 -2.9036 5.0325 9 6 3.7746 -1.8813 2.3821 10 6 3.3135 -1.2295 1.2539 11 7 2.0184 -0.6905 -1.1963 12 6 1.5939 -2.0650 -1.4732 13 6 2.8716 -0.0510 -2.0555 14 1 3.2915 0.9069 -1.7864 15 6 3.1968 -0.6341 -3.2726 16 7 2.7729 -1.8477 -3.5550 17 14 4.2362 0.3036 -4.5094 18 1 5.5527 0.6288 -3.9042 19 1 4.4411 -0.5330 -5.7191 20 1 3.5415 1.5604 -4.8880 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.2151 -0.4278 2.3202 25 1 1.0324 -1.5957 4.3279 26 1 4.7755 -2.2868 2.4004 27 1 3.9536 -1.1268 0.3901 28 1 2.4719 -2.7032 -1.5729 29 1 1.0205 -2.0884 -2.3999 30 1 0.9736 -2.4259 -0.6528 31 1 2.9998 -2.2550 -4.4056 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069064883.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:56 Heat of formation + Delta-G solvation = 42.865888 kcal Electronic energy + Delta-G solvation = -14841.797463 eV Core-core repulsion = 12362.885685 eV Total energy + Delta-G solvation = -2478.911778 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.51414 -37.72888 -34.64190 -32.61256 -32.10079 -30.87480 -29.08230 -28.07496 -25.56680 -23.38037 -23.29073 -20.78653 -18.89960 -17.75407 -16.98652 -16.13361 -15.95996 -15.63478 -14.98820 -14.54376 -14.40395 -14.18836 -13.90565 -13.36525 -12.90496 -12.64012 -12.61860 -12.46445 -12.27232 -12.15840 -11.97424 -11.76883 -11.59739 -11.44625 -11.20294 -10.61337 -9.88374 -9.44294 -8.91771 -7.72067 -5.16152 0.21260 0.45580 0.67642 1.48224 1.49787 1.56129 2.51172 2.75776 3.36771 3.66989 3.97934 4.00811 4.05172 4.42479 4.49878 4.57565 4.68456 4.79995 4.84644 5.03428 5.11806 5.14115 5.32247 5.38708 5.45237 5.56196 5.66751 5.83543 5.88827 5.98239 6.33585 7.20278 7.92987 8.32365 9.25781 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.031745 B = 0.004592 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.804766 B = 6095.759270 C = 6576.934619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.197 3.803 3 H 0.074 0.926 4 C -0.080 4.080 5 C -0.113 4.113 6 C -0.093 4.093 7 C -0.106 4.106 8 Br -0.052 7.052 9 C -0.102 4.102 10 C -0.104 4.104 11 N -0.611 5.611 12 C 0.197 3.803 13 C -0.251 4.251 14 H 0.079 0.921 15 C -0.059 4.059 16 N -0.946 5.946 17 Si 0.968 3.032 18 H -0.280 1.280 19 H -0.298 1.298 20 H -0.278 1.278 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.087 0.913 24 H 0.157 0.843 25 H 0.154 0.846 26 H 0.131 0.869 27 H 0.107 0.893 28 H 0.006 0.994 29 H 0.014 0.986 30 H 0.014 0.986 31 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.107 0.124 18.048 18.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.090 3.910 3 H 0.092 0.908 4 C -0.082 4.082 5 C -0.132 4.132 6 C -0.112 4.112 7 C -0.185 4.185 8 Br 0.033 6.967 9 C -0.122 4.122 10 C -0.123 4.123 11 N -0.334 5.334 12 C 0.053 3.947 13 C -0.381 4.381 14 H 0.097 0.903 15 C -0.252 4.252 16 N -0.595 5.595 17 Si 0.797 3.203 18 H -0.206 1.206 19 H -0.225 1.225 20 H -0.204 1.204 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.105 0.895 24 H 0.175 0.825 25 H 0.172 0.828 26 H 0.149 0.851 27 H 0.125 0.875 28 H 0.025 0.975 29 H 0.032 0.968 30 H 0.032 0.968 31 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.834 -0.299 18.461 18.555 hybrid contribution 0.749 0.283 -1.563 1.756 sum -1.085 -0.016 16.899 16.933 Atomic orbital electron populations 1.22210 0.95022 1.01635 1.01911 1.19512 0.93936 0.94567 0.82988 0.90787 1.21112 0.93802 0.96923 0.96384 1.21431 1.00796 0.99341 0.91655 1.21330 0.93731 0.96773 0.99396 1.21822 0.97702 1.05299 0.93669 1.96631 1.88677 1.77046 1.34303 1.21154 0.99960 0.98988 0.92092 1.21044 0.96570 0.97664 0.97053 1.44198 1.53624 1.12060 1.23484 1.20512 0.95659 0.84114 0.94432 1.19652 1.19593 1.02258 0.96573 0.90341 1.25603 1.02402 0.97572 0.99630 1.70416 1.51216 1.14706 1.23186 0.85316 0.78659 0.77713 0.78592 1.20571 1.22457 1.20430 0.93620 0.93264 0.89468 0.82518 0.82848 0.85078 0.87459 0.97547 0.96758 0.96800 0.94753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 8.16 71.98 0.59 -4.09 16 2 C 0.20 7.45 3.06 44.25 0.14 7.59 16 3 H 0.07 2.81 7.80 -2.38 -0.02 2.79 16 4 C -0.08 -2.72 4.99 -19.86 -0.10 -2.82 16 5 C -0.11 -3.04 9.13 22.27 0.20 -2.83 16 6 C -0.09 -2.31 9.79 22.29 0.22 -2.09 16 7 C -0.11 -2.91 6.22 22.31 0.14 -2.77 16 8 Br -0.05 -1.20 33.70 -20.37 -0.69 -1.88 16 9 C -0.10 -3.22 9.79 22.28 0.22 -3.00 16 10 C -0.10 -3.82 9.22 22.26 0.21 -3.62 16 11 N -0.61 -29.49 2.03 -706.97 -1.44 -30.93 16 12 C 0.20 9.96 8.04 127.77 1.03 10.99 16 13 C -0.25 -13.38 9.73 84.03 0.82 -12.57 16 14 H 0.08 4.01 7.69 -2.91 -0.02 3.98 16 15 C -0.06 -3.27 5.46 84.86 0.46 -2.80 16 16 N -0.95 -55.74 9.47 21.65 0.21 -55.54 16 17 Si 0.97 45.00 29.56 68.60 2.03 47.03 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 21 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.05 1.58 6.91 -2.39 -0.02 1.56 16 23 H 0.09 2.02 6.64 -2.39 -0.02 2.00 16 24 H 0.16 3.30 6.00 -2.91 -0.02 3.28 16 25 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 26 H 0.13 3.81 8.06 -2.91 -0.02 3.78 16 27 H 0.11 4.64 7.61 -2.91 -0.02 4.61 16 28 H 0.01 0.34 7.18 -2.39 -0.02 0.32 16 29 H 0.01 0.78 6.92 -2.39 -0.02 0.77 16 30 H 0.01 0.61 6.65 -2.39 -0.02 0.59 16 31 H 0.24 14.08 8.31 -92.70 -0.77 13.31 16 Total: -1.00 -60.15 275.64 5.15 -55.00 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 1.12 Total: 4.32 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 3.91 Total: -18.00 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -1.23 Total: -86.46 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 35 Polarization: -1.20 SS G_CDS: -0.69 Total: -1.88 kcal Total: -60.15 5.15 -55.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069064883.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.870 kcal (2) G-P(sol) polarization free energy of solvation -60.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds