Wall clock time and date at job start Tue Mar 31 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47145 * 2 1 4 4 C 1.50705 * 109.46995 * 240.00553 * 2 1 3 5 5 C 1.38247 * 119.98762 * 200.65828 * 4 2 1 6 6 C 1.38217 * 120.00620 * 179.76747 * 5 4 2 7 7 C 1.38321 * 119.99203 * 0.50443 * 6 5 4 8 8 Br 1.89102 * 120.01101 * 179.72540 * 7 6 5 9 9 C 1.38321 * 119.98095 * 359.75011 * 7 6 5 10 10 C 1.38220 * 119.98785 * 359.97438 * 9 7 6 11 11 N 1.46500 * 109.47222 * 120.00598 * 2 1 3 12 12 C 1.46500 * 120.00189 * 63.79603 * 11 2 1 13 13 C 1.36936 * 119.99634 * 243.79685 * 11 2 1 14 14 H 1.08007 * 120.00301 * 351.89083 * 13 11 2 15 15 C 1.38814 * 119.99950 * 171.89303 * 13 11 2 16 16 N 1.31620 * 119.99908 * 5.44088 * 15 13 11 17 17 Si 1.86802 * 119.99969 * 185.44605 * 15 13 11 18 18 H 1.48500 * 109.47017 * 60.00246 * 17 15 13 19 19 H 1.48504 * 109.46924 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47262 * 299.99872 * 17 15 13 21 21 H 1.09005 * 109.46983 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47240 * 299.99527 * 1 2 3 23 23 H 1.09003 * 109.46942 * 59.99763 * 1 2 3 24 24 H 1.08001 * 119.99335 * 0.02562 * 5 4 2 25 25 H 1.08003 * 120.00224 * 180.27675 * 6 5 4 26 26 H 1.08001 * 120.01133 * 179.97438 * 9 7 6 27 27 H 1.08006 * 119.99398 * 180.02562 * 10 9 7 28 28 H 1.08996 * 109.47005 * 3.34438 * 12 11 2 29 29 H 1.08998 * 109.46804 * 123.34614 * 12 11 2 30 30 H 1.08996 * 109.46755 * 243.34493 * 12 11 2 31 31 H 0.97003 * 119.99984 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 3.3190 -1.2152 -1.2602 6 6 3.7785 -1.8709 -2.3868 7 6 2.9543 -2.0128 -3.4886 8 35 3.5851 -2.9031 -5.0331 9 6 1.6688 -1.5029 -3.4605 10 6 1.2082 -0.8523 -2.3313 11 7 2.0184 -0.6907 1.1961 12 6 1.7344 -2.1153 1.3866 13 6 2.7403 -0.0048 2.1360 14 1 3.0620 1.0070 1.9373 15 6 3.0587 -0.6097 3.3441 16 7 2.7609 -1.8760 3.5447 17 14 3.9097 0.3734 4.6853 18 1 3.0545 1.5235 5.0743 19 1 4.1372 -0.4959 5.8676 20 1 5.2133 0.8743 4.1804 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 3.9637 -1.1008 -0.4013 25 1 4.7821 -2.2692 -2.4082 26 1 1.0251 -1.6131 -4.3206 27 1 0.2044 -0.4545 -2.3091 28 1 1.2050 -2.4999 0.5150 29 1 2.6708 -2.6587 1.5121 30 1 1.1161 -2.2468 2.2746 31 1 2.9830 -2.2986 4.3891 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069064886.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:59 Heat of formation + Delta-G solvation = 42.738296 kcal Electronic energy + Delta-G solvation = -14840.205517 eV Core-core repulsion = 12361.288207 eV Total energy + Delta-G solvation = -2478.917310 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.53713 -37.71836 -34.64590 -32.60108 -32.12013 -30.88284 -29.09767 -28.05593 -25.55503 -23.39278 -23.32143 -20.80465 -18.89427 -17.75616 -16.96896 -16.15317 -15.95804 -15.63303 -14.98814 -14.51451 -14.41363 -14.20405 -13.92417 -13.34890 -12.90402 -12.63636 -12.62715 -12.49934 -12.24943 -12.16447 -11.99761 -11.77746 -11.59886 -11.45272 -11.20542 -10.61452 -9.89066 -9.45588 -8.91569 -7.72005 -5.16086 0.20111 0.44690 0.67293 1.48322 1.50098 1.56358 2.51236 2.74747 3.36936 3.66866 3.96317 3.99356 4.04519 4.42909 4.48896 4.57321 4.69042 4.79656 4.84287 5.02380 5.11079 5.13694 5.31438 5.38440 5.45286 5.55420 5.66074 5.82631 5.88367 5.96800 6.33349 7.20198 7.92746 8.32264 9.25918 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.033940 B = 0.004498 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.776176 B = 6223.022364 C = 6662.041204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.197 3.803 3 H 0.074 0.926 4 C -0.078 4.078 5 C -0.104 4.104 6 C -0.101 4.101 7 C -0.105 4.105 8 Br -0.051 7.051 9 C -0.092 4.092 10 C -0.113 4.113 11 N -0.611 5.611 12 C 0.199 3.801 13 C -0.251 4.251 14 H 0.079 0.921 15 C -0.059 4.059 16 N -0.947 5.947 17 Si 0.969 3.031 18 H -0.278 1.278 19 H -0.298 1.298 20 H -0.279 1.279 21 H 0.046 0.954 22 H 0.044 0.956 23 H 0.085 0.915 24 H 0.107 0.893 25 H 0.132 0.868 26 H 0.154 0.846 27 H 0.157 0.843 28 H 0.011 0.989 29 H 0.007 0.993 30 H 0.013 0.987 31 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.870 0.108 -18.166 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.090 3.910 3 H 0.092 0.908 4 C -0.080 4.080 5 C -0.123 4.123 6 C -0.121 4.121 7 C -0.184 4.184 8 Br 0.034 6.966 9 C -0.112 4.112 10 C -0.132 4.132 11 N -0.334 5.334 12 C 0.055 3.945 13 C -0.381 4.381 14 H 0.097 0.903 15 C -0.252 4.252 16 N -0.596 5.596 17 Si 0.798 3.202 18 H -0.205 1.205 19 H -0.225 1.225 20 H -0.205 1.205 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.104 0.896 24 H 0.125 0.875 25 H 0.150 0.850 26 H 0.172 0.828 27 H 0.174 0.826 28 H 0.030 0.970 29 H 0.026 0.974 30 H 0.031 0.969 31 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.593 -0.319 -18.585 18.656 hybrid contribution 0.635 0.313 1.616 1.764 sum -0.958 -0.006 -16.969 16.996 Atomic orbital electron populations 1.22239 0.95436 1.01450 1.01764 1.19510 0.93812 0.94640 0.82999 0.90782 1.20986 0.93805 0.96964 0.96254 1.21032 0.96474 0.97731 0.97079 1.21152 0.99986 0.98862 0.92079 1.21827 0.97623 1.05257 0.93734 1.96635 1.88679 1.77026 1.34259 1.21329 0.93718 0.96797 0.99323 1.21423 1.00766 0.99296 0.91695 1.44200 1.62329 1.06615 1.20299 1.20488 0.96776 0.83056 0.94198 1.19667 1.26385 0.97406 0.94652 0.90280 1.25605 1.02510 0.97143 0.99980 1.70421 1.53768 1.11142 1.24264 0.85304 0.78425 0.77616 0.78873 1.20451 1.22467 1.20523 0.93493 0.93733 0.89594 0.87485 0.84978 0.82819 0.82554 0.97017 0.97448 0.96859 0.94755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 8.25 71.98 0.59 -4.17 16 2 C 0.20 7.49 3.06 44.25 0.14 7.63 16 3 H 0.07 2.81 7.78 -2.39 -0.02 2.79 16 4 C -0.08 -2.64 4.66 -19.86 -0.09 -2.74 16 5 C -0.10 -3.77 8.95 22.27 0.20 -3.57 16 6 C -0.10 -3.14 9.79 22.28 0.22 -2.92 16 7 C -0.11 -2.86 6.22 22.31 0.14 -2.72 16 8 Br -0.05 -1.17 33.70 -20.37 -0.69 -1.86 16 9 C -0.09 -2.27 9.79 22.29 0.22 -2.06 16 10 C -0.11 -3.02 9.12 22.26 0.20 -2.82 16 11 N -0.61 -29.60 2.12 -706.99 -1.50 -31.10 16 12 C 0.20 10.10 7.77 127.77 0.99 11.09 16 13 C -0.25 -13.43 9.80 84.03 0.82 -12.61 16 14 H 0.08 4.04 7.67 -2.91 -0.02 4.02 16 15 C -0.06 -3.29 5.46 84.86 0.46 -2.83 16 16 N -0.95 -55.86 9.47 21.65 0.21 -55.66 16 17 Si 0.97 45.02 29.56 68.60 2.03 47.04 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 H 0.05 1.53 7.36 -2.38 -0.02 1.51 16 22 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.09 2.02 6.66 -2.39 -0.02 2.01 16 24 H 0.11 4.56 7.70 -2.91 -0.02 4.54 16 25 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 26 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 27 H 0.16 3.31 5.99 -2.91 -0.02 3.30 16 28 H 0.01 0.52 6.85 -2.39 -0.02 0.50 16 29 H 0.01 0.39 7.18 -2.39 -0.02 0.38 16 30 H 0.01 0.73 6.91 -2.39 -0.02 0.72 16 31 H 0.24 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -60.22 275.71 5.06 -55.15 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 1.12 Total: 4.14 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: 3.89 Total: -17.73 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -1.29 Total: -86.76 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 35 Polarization: -1.17 SS G_CDS: -0.69 Total: -1.86 kcal Total: -60.22 5.06 -55.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069064886.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.892 kcal (2) G-P(sol) polarization free energy of solvation -60.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds