Wall clock time and date at job start Tue Mar 31 2020 06:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86800 * 120.00291 * 2 1 4 4 H 1.48504 * 109.46854 * 240.00286 * 3 2 1 5 5 H 1.48507 * 109.47058 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47322 * 120.00099 * 3 2 1 7 7 C 1.38618 * 119.99685 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00241 * 180.02562 * 7 2 1 9 9 O 1.34812 * 119.99930 * 359.97438 * 7 2 1 10 10 C 1.35798 * 116.99900 * 184.76723 * 9 7 2 11 11 C 1.38894 * 119.99602 * 354.28084 * 10 9 7 12 12 C 1.38007 * 120.01109 * 180.02562 * 11 10 9 13 13 C 1.38959 * 119.99039 * 0.02562 * 12 11 10 14 14 N 1.39778 * 120.00425 * 179.97438 * 13 12 11 15 15 S 1.65606 * 120.00049 * 104.56854 * 14 13 12 16 16 O 1.42097 * 104.27627 * 179.97438 * 15 14 13 17 17 O 1.42098 * 104.27621 * 52.10516 * 15 14 13 18 18 C 1.81397 * 104.44771 * 296.03612 * 15 14 13 19 19 C 1.52994 * 117.50183 * 106.52477 * 18 15 14 20 20 C 1.53002 * 117.49854 * 175.18964 * 18 15 14 21 21 C 1.38951 * 119.98552 * 0.25274 * 13 12 11 22 22 C 1.38009 * 119.99526 * 359.49247 * 21 13 12 23 23 H 0.97003 * 119.99513 * 359.97438 * 1 2 3 24 24 H 1.08002 * 119.99290 * 359.97438 * 11 10 9 25 25 H 1.07996 * 120.01045 * 179.97438 * 12 11 10 26 26 H 0.96994 * 119.99800 * 284.56693 * 14 13 12 27 27 H 1.09003 * 115.55287 * 320.85019 * 18 15 14 28 28 H 1.09003 * 117.49899 * 215.00256 * 19 18 15 29 29 H 1.09001 * 117.49715 * 0.02562 * 19 18 15 30 30 H 1.08999 * 117.49555 * 359.96455 * 20 18 15 31 31 H 1.08997 * 117.50355 * 144.99391 * 20 18 15 32 32 H 1.07999 * 119.99755 * 179.74875 * 21 13 12 33 33 H 1.07995 * 119.99438 * 180.23070 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.1036 1.6963 -1.2126 5 1 1.2849 2.7465 -0.0006 6 1 3.1037 1.6963 1.2124 7 6 2.0089 -1.2005 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3347 -2.3680 -0.0005 10 6 2.0707 -3.5048 0.0995 11 6 3.4578 -3.4383 0.0761 12 6 4.2061 -4.5936 0.1772 13 6 3.5715 -5.8235 0.3019 14 7 4.3290 -6.9937 0.4037 15 16 4.4917 -7.7500 1.8680 16 8 5.3093 -8.8786 1.5906 17 8 3.1575 -7.9077 2.3311 18 6 5.3858 -6.5543 2.8981 19 6 4.5928 -5.8255 3.9847 20 6 5.6005 -6.9114 4.3703 21 6 2.1837 -5.8902 0.3194 22 6 1.4361 -4.7342 0.2236 23 1 -0.4849 0.8401 0.0004 24 1 3.9510 -2.4825 -0.0221 25 1 5.2846 -4.5419 0.1586 26 1 4.7594 -7.3629 -0.3832 27 1 6.1771 -5.9988 2.3945 28 1 4.8621 -4.7906 4.1959 29 1 3.5337 -6.0649 4.0809 30 1 5.2039 -7.8645 4.7200 31 1 6.5328 -6.5909 4.8353 32 1 1.6902 -6.8464 0.4122 33 1 0.3575 -4.7857 0.2410 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070938349.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:19 Heat of formation + Delta-G solvation = -65.020909 kcal Electronic energy + Delta-G solvation = -19800.041414 eV Core-core repulsion = 16532.922706 eV Total energy + Delta-G solvation = -3267.118708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.85644 -38.82120 -38.25432 -37.75620 -37.07155 -35.28409 -34.07915 -31.86391 -29.10641 -27.20828 -24.54558 -23.63896 -23.50340 -22.96286 -20.40669 -19.86300 -19.06605 -18.83711 -18.36222 -17.65114 -16.66348 -16.34693 -16.22273 -15.77927 -15.52090 -15.26749 -14.73703 -14.50172 -14.30612 -13.86608 -13.58582 -13.30611 -13.18471 -13.04445 -12.79730 -12.60984 -12.57989 -12.36933 -12.14281 -12.08327 -12.04181 -11.66316 -11.33751 -10.81798 -10.62240 -9.85476 -8.95604 -8.45359 -6.13278 -0.75918 0.55454 0.55917 1.39226 1.49028 1.55067 1.65176 2.19597 2.25785 2.76320 2.81381 3.14136 3.26413 3.48801 3.61572 3.83132 3.93555 4.10916 4.16946 4.30484 4.51892 4.59389 4.69703 4.73867 4.90577 5.03620 5.07119 5.13038 5.24333 5.47561 5.62080 5.67015 5.94936 6.02791 6.31874 6.99085 7.77235 8.77023 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.028595 B = 0.004260 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.948429 B = 6570.939263 C = 6961.810790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.413 4.413 8 H 0.110 0.890 9 O -0.225 6.225 10 C 0.127 3.873 11 C -0.231 4.231 12 C -0.050 4.050 13 C 0.042 3.958 14 N -1.042 6.042 15 S 2.644 3.356 16 O -0.986 6.986 17 O -0.982 6.982 18 C -0.678 4.678 19 C -0.133 4.133 20 C -0.120 4.120 21 C -0.057 4.057 22 C -0.196 4.196 23 H 0.273 0.727 24 H 0.133 0.867 25 H 0.156 0.844 26 H 0.427 0.573 27 H 0.181 0.819 28 H 0.124 0.876 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.039 -9.842 5.547 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.179 1.179 7 C -0.489 4.489 8 H 0.127 0.873 9 O -0.131 6.131 10 C 0.076 3.924 11 C -0.251 4.251 12 C -0.070 4.070 13 C -0.053 4.053 14 N -0.798 5.798 15 S 2.740 3.260 16 O -0.977 6.977 17 O -0.972 6.972 18 C -0.789 4.789 19 C -0.171 4.171 20 C -0.158 4.158 21 C -0.077 4.077 22 C -0.216 4.216 23 H 0.082 0.918 24 H 0.150 0.850 25 H 0.173 0.827 26 H 0.266 0.734 27 H 0.198 0.802 28 H 0.142 0.858 29 H 0.122 0.878 30 H 0.130 0.870 31 H 0.158 0.842 32 H 0.153 0.847 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 13.244 -10.531 5.869 17.909 hybrid contribution 0.273 1.228 -0.615 1.400 sum 13.517 -9.302 5.254 17.229 Atomic orbital electron populations 1.70197 1.08118 1.28925 1.48403 1.26595 0.96778 1.02824 0.95762 0.84651 0.77368 0.74220 0.80033 1.18059 1.20115 1.17941 1.21849 0.92778 0.81144 1.53118 0.87328 1.83969 1.36059 1.12631 1.80434 1.19949 0.91781 0.87660 0.93041 1.21185 0.92580 1.00081 1.11227 1.21253 1.00601 0.89903 0.95275 1.16791 0.89151 0.85517 1.13797 1.52590 1.64051 1.36850 1.26282 1.03823 0.74115 0.74148 0.73898 1.93549 1.71627 1.48833 1.83672 1.93560 1.36313 1.85671 1.81683 1.32300 1.18651 1.21976 1.05979 1.22947 0.98055 1.00021 0.96111 1.23065 1.03280 1.00790 0.88708 1.21182 0.93427 0.97366 0.95774 1.20283 1.00117 0.90087 1.11149 0.91847 0.84952 0.82671 0.73407 0.80177 0.85795 0.87779 0.87011 0.84198 0.84654 0.86489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.54 13.67 21.61 0.30 -54.25 16 2 C -0.02 -1.17 5.49 84.82 0.47 -0.70 16 3 Si 1.02 40.45 29.55 68.60 2.03 42.48 16 4 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 5 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 7 C -0.41 -22.54 9.48 67.91 0.64 -21.90 16 8 H 0.11 5.26 5.20 -2.91 -0.02 5.25 16 9 O -0.23 -12.82 9.76 -23.09 -0.23 -13.05 16 10 C 0.13 5.91 6.65 22.59 0.15 6.06 16 11 C -0.23 -8.85 9.16 22.37 0.20 -8.65 16 12 C -0.05 -1.46 9.96 22.39 0.22 -1.24 16 13 C 0.04 1.26 5.70 38.22 0.22 1.48 16 14 N -1.04 -24.39 5.60 -51.25 -0.29 -24.67 16 15 S 2.64 64.11 5.80 -56.49 -0.33 63.78 16 16 O -0.99 -27.90 18.08 -127.65 -2.31 -30.21 16 17 O -0.98 -30.65 16.28 -127.65 -2.08 -32.73 16 18 C -0.68 -12.26 6.42 30.59 0.20 -12.06 16 19 C -0.13 -2.51 10.17 30.62 0.31 -2.20 16 20 C -0.12 -1.73 10.30 30.62 0.32 -1.42 16 21 C -0.06 -1.97 9.23 22.39 0.21 -1.76 16 22 C -0.20 -8.13 9.98 22.37 0.22 -7.90 16 23 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 24 H 0.13 5.02 5.63 -2.91 -0.02 5.00 16 25 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 26 H 0.43 7.97 8.92 -96.75 -0.86 7.11 16 27 H 0.18 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.10 2.29 7.68 -2.39 -0.02 2.27 16 30 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.14 1.29 8.14 -2.39 -0.02 1.28 16 32 H 0.14 4.37 7.84 -2.91 -0.02 4.35 16 33 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -73.68 304.86 0.55 -73.13 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.29 Total: 25.81 kcal Atomic # 6 Polarization: -53.46 SS G_CDS: 3.16 Total: -50.30 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: 0.01 Total: -78.92 kcal Atomic # 8 Polarization: -71.38 SS G_CDS: -4.61 Total: -75.99 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Atomic # 16 Polarization: 64.11 SS G_CDS: -0.33 Total: 63.78 kcal Total: -73.68 0.55 -73.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070938349.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.111 kcal (2) G-P(sol) polarization free energy of solvation -73.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds