Wall clock time and date at job start Tue Mar 31 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86800 * 120.00428 * 2 1 4 4 H 1.48498 * 109.47326 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47010 * 300.00195 * 3 2 1 6 6 H 1.48501 * 109.46981 * 59.99895 * 3 2 1 7 7 C 1.38659 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00016 * 180.02562 * 7 2 1 9 9 O 1.34831 * 119.99628 * 0.02562 * 7 2 1 10 10 C 1.35749 * 116.99817 * 185.05357 * 9 7 2 11 11 C 1.38958 * 120.03381 * 174.78047 * 10 9 7 12 12 C 1.38131 * 120.08146 * 180.25537 * 11 10 9 13 13 C 1.38186 * 120.14022 * 359.44577 * 12 11 10 14 14 C 1.38969 * 120.06426 * 0.25755 * 13 12 11 15 15 N 1.39662 * 120.03867 * 180.02562 * 14 13 12 16 16 S 1.65601 * 120.00314 * 45.00212 * 15 14 13 17 17 O 1.42100 * 104.27715 * 181.07085 * 16 15 14 18 18 O 1.42106 * 104.27470 * 308.92283 * 16 15 14 19 19 C 1.81399 * 104.45328 * 64.99577 * 16 15 14 20 20 C 1.53002 * 117.49866 * 253.75161 * 19 16 15 21 21 C 1.52996 * 117.50166 * 185.08763 * 19 16 15 22 22 C 1.38725 * 120.03347 * 354.46113 * 10 9 7 23 23 H 0.96998 * 119.99806 * 359.97438 * 1 2 3 24 24 H 1.08005 * 119.96213 * 359.97438 * 11 10 9 25 25 H 1.08000 * 119.92657 * 179.72362 * 12 11 10 26 26 H 1.08008 * 119.96865 * 180.27577 * 13 12 11 27 27 H 0.97002 * 120.00112 * 224.99209 * 15 14 13 28 28 H 1.09001 * 115.54274 * 39.41932 * 19 16 15 29 29 H 1.09000 * 117.49871 * 359.97438 * 20 19 16 30 30 H 1.09002 * 117.49870 * 145.01818 * 20 19 16 31 31 H 1.08995 * 117.50400 * 214.97903 * 21 19 16 32 32 H 1.08999 * 117.49753 * 0.02562 * 21 19 16 33 33 H 1.08001 * 120.06745 * 0.04365 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8909 2.3964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0697 -3.5046 0.1076 11 6 1.4351 -4.7354 0.2233 12 6 2.1822 -5.8916 0.3377 13 6 3.5626 -5.8297 0.3259 14 6 4.2035 -4.6026 0.2042 15 7 5.5987 -4.5408 0.1918 16 16 6.4669 -5.6100 -0.7276 17 8 7.8230 -5.2689 -0.4750 18 8 5.9519 -6.8836 -0.3639 19 6 6.0167 -5.2062 -2.4378 20 6 5.0859 -6.1743 -3.1707 21 6 6.5687 -6.1063 -3.5450 22 6 3.4554 -3.4388 0.0950 23 1 -0.4850 0.8400 0.0004 24 1 0.3563 -4.7876 0.2285 25 1 1.6863 -6.8464 0.4320 26 1 4.1440 -6.7359 0.4110 27 1 6.0592 -3.8714 0.7217 28 1 5.9125 -4.1437 -2.6580 29 1 4.7443 -7.0541 -2.6254 30 1 4.3695 -5.7488 -3.8735 31 1 6.8271 -5.6363 -4.4938 32 1 7.2019 -6.9415 -3.2458 33 1 3.9509 -2.4838 0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070938396.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:49 Heat of formation + Delta-G solvation = -63.109889 kcal Electronic energy + Delta-G solvation = -19993.586270 eV Core-core repulsion = 16726.550430 eV Total energy + Delta-G solvation = -3267.035840 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.89256 -38.87342 -38.28859 -37.81086 -37.18813 -35.68398 -34.20259 -30.82807 -29.87275 -27.29104 -24.58328 -23.57483 -23.47343 -23.17295 -20.59172 -19.80838 -19.36750 -18.75996 -18.03947 -17.39564 -16.76430 -16.58117 -16.15646 -15.92442 -15.69518 -15.51095 -14.67421 -14.55077 -14.41832 -13.86537 -13.64151 -13.44038 -13.41156 -13.06776 -12.74933 -12.59885 -12.52258 -12.22278 -12.13786 -12.10951 -12.02905 -11.67272 -11.36932 -11.30036 -10.77474 -9.46140 -8.97889 -8.47076 -6.15257 -0.88818 0.50287 0.69054 1.35781 1.43178 1.46415 1.52833 2.16605 2.20171 2.66974 2.79839 3.12421 3.17140 3.50870 3.51779 3.78392 3.88091 4.04290 4.21498 4.40112 4.52598 4.56795 4.67634 4.73310 4.87535 5.02281 5.03789 5.11554 5.20868 5.54484 5.66561 5.71334 5.89578 6.02504 6.22901 6.98065 7.77615 8.75865 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.020698 B = 0.005070 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.451545 B = 5521.839941 C = 6052.002369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.020 4.020 3 Si 1.014 2.986 4 H -0.252 1.252 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.412 4.412 8 H 0.103 0.897 9 O -0.226 6.226 10 C 0.132 3.868 11 C -0.205 4.205 12 C -0.044 4.044 13 C -0.227 4.227 14 C 0.190 3.810 15 N -1.053 6.053 16 S 2.650 3.350 17 O -0.982 6.982 18 O -0.963 6.963 19 C -0.692 4.692 20 C -0.125 4.125 21 C -0.116 4.116 22 C -0.250 4.250 23 H 0.272 0.728 24 H 0.121 0.879 25 H 0.161 0.839 26 H 0.160 0.840 27 H 0.429 0.571 28 H 0.166 0.834 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.136 0.864 32 H 0.120 0.880 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.902 -10.684 -5.716 16.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.218 4.218 3 Si 0.834 3.166 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.488 4.488 8 H 0.120 0.880 9 O -0.132 6.132 10 C 0.081 3.919 11 C -0.225 4.225 12 C -0.062 4.062 13 C -0.249 4.249 14 C 0.094 3.906 15 N -0.803 5.803 16 S 2.747 3.253 17 O -0.972 6.972 18 O -0.953 6.953 19 C -0.803 4.803 20 C -0.163 4.163 21 C -0.155 4.155 22 C -0.273 4.273 23 H 0.082 0.918 24 H 0.139 0.861 25 H 0.179 0.821 26 H 0.178 0.822 27 H 0.267 0.733 28 H 0.183 0.817 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.155 0.845 32 H 0.138 0.862 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.095 -11.287 -5.478 17.427 hybrid contribution -0.133 2.034 0.032 2.038 sum 11.963 -9.254 -5.447 16.075 Atomic orbital electron populations 1.70177 1.07933 1.28711 1.48723 1.26510 0.96784 1.02575 0.95930 0.84586 0.78300 0.75196 0.78513 1.17509 1.19397 1.19552 1.21827 0.92496 0.81369 1.53115 0.87990 1.83973 1.35642 1.12471 1.81100 1.19695 0.90742 0.88120 0.93374 1.20581 1.00433 0.90264 1.11252 1.20979 0.92815 0.97589 0.94863 1.21710 0.95762 0.97295 1.10113 1.17053 0.81471 0.93450 0.98617 1.53126 1.12778 1.53672 1.60743 1.03693 0.72131 0.73245 0.76273 1.93563 1.34558 1.84310 1.84791 1.93507 1.79921 1.40671 1.81220 1.32296 1.20883 1.08890 1.18261 1.23051 0.94233 0.98034 1.00968 1.23110 0.96984 0.98340 0.97067 1.21076 0.93238 0.98941 1.14074 0.91847 0.86086 0.82127 0.82234 0.73345 0.81666 0.86112 0.86031 0.84548 0.86190 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.68 13.67 21.61 0.30 -54.38 16 2 C -0.02 -1.10 5.49 84.83 0.47 -0.63 16 3 Si 1.01 41.52 29.55 68.60 2.03 43.55 16 4 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 6 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.41 -22.96 9.49 67.92 0.64 -22.31 16 8 H 0.10 5.19 5.20 -2.91 -0.02 5.17 16 9 O -0.23 -12.93 9.76 -22.74 -0.22 -13.15 16 10 C 0.13 6.19 6.65 22.56 0.15 6.34 16 11 C -0.21 -8.12 9.99 22.42 0.22 -7.89 16 12 C -0.04 -1.39 10.03 22.23 0.22 -1.17 16 13 C -0.23 -7.28 9.18 22.43 0.21 -7.07 16 14 C 0.19 6.43 6.13 38.20 0.23 6.66 16 15 N -1.05 -29.34 5.67 -51.42 -0.29 -29.64 16 16 S 2.65 67.26 5.75 -56.49 -0.32 66.94 16 17 O -0.98 -29.40 18.08 -127.65 -2.31 -31.71 16 18 O -0.96 -27.39 14.24 -127.65 -1.82 -29.21 16 19 C -0.69 -14.12 6.44 30.59 0.20 -13.92 16 20 C -0.12 -2.23 10.17 30.62 0.31 -1.92 16 21 C -0.12 -1.70 10.30 30.62 0.32 -1.39 16 22 C -0.25 -10.24 9.09 22.52 0.20 -10.03 16 23 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 24 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 25 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 26 H 0.16 4.76 5.49 -2.91 -0.02 4.75 16 27 H 0.43 10.56 8.92 -96.74 -0.86 9.70 16 28 H 0.17 3.25 8.14 -2.39 -0.02 3.23 16 29 H 0.12 2.14 7.68 -2.39 -0.02 2.12 16 30 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.13 5.19 5.63 -2.91 -0.02 5.17 16 Total: -1.00 -73.08 300.89 0.83 -72.25 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.30 Total: 28.69 kcal Atomic # 6 Polarization: -56.51 SS G_CDS: 3.18 Total: -53.34 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: 0.00 Total: -84.02 kcal Atomic # 8 Polarization: -69.72 SS G_CDS: -4.35 Total: -74.07 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 16 Polarization: 67.26 SS G_CDS: -0.32 Total: 66.94 kcal Total: -73.08 0.83 -72.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070938396.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.140 kcal (2) G-P(sol) polarization free energy of solvation -73.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds