Wall clock time and date at job start Tue Mar 31 2020 05:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99448 * 2 1 4 4 H 1.48501 * 109.47042 * 270.00077 * 3 2 1 5 5 H 1.48494 * 109.47318 * 30.00591 * 3 2 1 6 6 H 1.48505 * 109.46802 * 150.00577 * 3 2 1 7 7 C 1.37880 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99732 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99950 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47390 * 180.02562 * 9 7 2 11 11 S 1.81000 * 109.47371 * 179.97438 * 10 9 7 12 12 C 1.76203 * 99.99956 * 179.97438 * 11 10 9 13 13 N 1.30950 * 124.96964 * 359.97438 * 12 11 10 14 14 C 1.36112 * 108.69239 * 180.02562 * 13 12 11 15 15 C 1.39565 * 133.63410 * 180.02562 * 14 13 12 16 16 C 1.37881 * 119.71747 * 179.97438 * 15 14 13 17 17 Cl 1.73605 * 119.81782 * 179.97438 * 16 15 14 18 18 C 1.38734 * 120.36211 * 359.95998 * 16 15 14 19 19 C 1.38029 * 120.45236 * 0.05803 * 18 16 15 20 20 C 1.38530 * 119.91846 * 359.95990 * 19 18 16 21 21 O 1.34503 * 124.97201 * 179.97438 * 12 11 10 22 22 H 0.96993 * 120.00281 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47521 * 59.99810 * 9 7 2 24 24 H 1.09003 * 109.47055 * 300.00366 * 9 7 2 25 25 H 1.08999 * 109.47221 * 59.99287 * 10 9 7 26 26 H 1.09004 * 109.46663 * 300.00407 * 10 9 7 27 27 H 1.07994 * 120.14247 * 359.71863 * 15 14 13 28 28 H 1.08005 * 119.77314 * 180.02562 * 18 16 15 29 29 H 1.08000 * 120.04298 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 16 1.3405 -5.2296 0.0002 12 6 2.6904 -6.3621 -0.0007 13 7 3.9551 -6.0224 -0.0021 14 6 4.7108 -7.1545 -0.0030 15 6 6.0856 -7.3946 -0.0041 16 6 6.5529 -8.6919 -0.0043 17 17 8.2625 -8.9936 -0.0063 18 6 5.6643 -9.7573 -0.0025 19 6 4.3025 -9.5324 -0.0018 20 6 3.8164 -8.2352 -0.0019 21 8 2.5726 -7.7020 0.0000 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8902 24 1 0.6249 -2.5570 0.8897 25 1 2.8722 -3.6042 0.8894 26 1 2.8721 -3.6042 -0.8905 27 1 6.7805 -6.5680 -0.0090 28 1 6.0407 -10.7696 -0.0022 29 1 3.6167 -10.3667 -0.0008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071793642.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:24 Heat of formation + Delta-G solvation = 21.284730 kcal Electronic energy + Delta-G solvation = -16218.087319 eV Core-core repulsion = 13259.587175 eV Total energy + Delta-G solvation = -2958.500145 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.017 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.21157 -38.47992 -36.57403 -34.82432 -33.83842 -31.10867 -30.79563 -29.94390 -25.50293 -24.41725 -23.23679 -22.13822 -21.30564 -18.49124 -17.93876 -17.09524 -16.90715 -16.65317 -15.42660 -14.58257 -14.47268 -14.42011 -13.97171 -13.85440 -13.56461 -13.07236 -12.29347 -12.02346 -11.91276 -11.82645 -11.56411 -11.35100 -11.09401 -10.74322 -10.58448 -10.41294 -10.35244 -9.81884 -9.29323 -9.26291 -8.90512 -8.51782 -7.54902 -6.16040 -4.20861 0.36666 0.78240 0.86099 1.71833 2.14749 2.40528 2.89271 3.25770 3.27229 3.32376 3.36153 4.17559 4.35544 4.44811 4.64189 4.75532 5.03848 5.20435 5.22149 5.66148 5.77695 5.82474 5.83894 5.90301 6.01999 6.10538 6.51580 7.33222 7.35940 7.40954 7.78950 8.13410 8.83321 9.43955 10.94746 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.025571 B = 0.003309 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.728272 B = 8459.902855 C = 9534.185404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.062 0.938 9 C 0.035 3.965 10 C -0.086 4.086 11 S 0.035 5.965 12 C 0.240 3.760 13 N -0.486 5.486 14 C 0.054 3.946 15 C -0.058 4.058 16 C -0.034 4.034 17 Cl -0.059 7.059 18 C -0.098 4.098 19 C -0.072 4.072 20 C 0.003 3.997 21 O -0.195 6.195 22 H 0.264 0.736 23 H 0.030 0.970 24 H 0.030 0.970 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.871 -19.474 -0.006 21.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.005 4.005 10 C -0.234 4.234 11 S 0.270 5.730 12 C -0.077 4.077 13 N -0.221 5.221 14 C -0.061 4.061 15 C -0.079 4.079 16 C -0.062 4.062 17 Cl -0.031 7.031 18 C -0.117 4.117 19 C -0.091 4.091 20 C -0.051 4.051 21 O -0.088 6.088 22 H 0.074 0.926 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.164 0.836 28 H 0.167 0.833 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.846 -18.954 -0.001 20.917 hybrid contribution 1.622 0.398 -0.011 1.670 sum 10.468 -18.556 -0.012 21.306 Atomic orbital electron populations 1.69951 1.06085 1.27144 1.49695 1.25009 0.94948 0.99419 0.94813 0.86460 0.79778 0.82745 0.78276 1.20465 1.21054 1.19689 1.21001 0.93226 0.89545 1.52194 0.91991 1.19026 0.93394 0.89183 0.98871 1.24247 1.02511 0.90261 1.06397 1.86315 1.00983 0.97023 1.88726 1.29087 0.98515 0.83320 0.96735 1.71403 0.99773 1.27318 1.23605 1.19712 0.94593 0.88568 1.03240 1.20051 0.92198 0.95939 0.99739 1.20507 0.85518 0.93878 1.06265 1.98380 1.11599 1.96077 1.96996 1.20787 0.90799 0.98932 1.01214 1.19748 0.94840 0.92296 1.02236 1.20447 0.82632 0.96257 1.05717 1.84704 1.28788 1.20298 1.75047 0.92621 0.95139 0.95138 0.89117 0.89114 0.83573 0.83343 0.83774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.50 13.29 55.43 0.74 -24.77 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 15 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 15 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 7 C -0.52 -13.92 9.11 -34.44 -0.31 -14.23 15 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 15 9 C 0.04 0.85 4.98 -27.89 -0.14 0.71 15 10 C -0.09 -1.72 5.08 37.16 0.19 -1.53 15 11 S 0.03 0.60 22.31 -107.50 -2.40 -1.80 15 12 C 0.24 4.12 8.36 52.39 0.44 4.56 15 13 N -0.49 -8.66 10.63 -11.45 -0.12 -8.78 15 14 C 0.05 0.83 7.23 -84.70 -0.61 0.21 15 15 C -0.06 -0.74 9.87 -39.22 -0.39 -1.13 15 16 C -0.03 -0.35 6.31 -39.53 -0.25 -0.60 15 17 Cl -0.06 -0.55 28.94 -51.86 -1.50 -2.05 15 18 C -0.10 -0.87 9.81 -39.47 -0.39 -1.26 15 19 C -0.07 -0.73 10.06 -39.55 -0.40 -1.13 15 20 C 0.00 0.04 7.42 -38.71 -0.29 -0.24 15 21 O -0.20 -3.10 10.79 2.25 0.02 -3.08 15 22 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 25 H 0.09 1.81 8.14 -51.92 -0.42 1.39 15 26 H 0.09 1.81 8.14 -51.91 -0.42 1.39 15 27 H 0.15 1.72 8.06 -52.49 -0.42 1.29 15 28 H 0.15 0.88 8.06 -52.48 -0.42 0.45 15 29 H 0.14 1.06 8.06 -52.49 -0.42 0.63 15 LS Contribution 293.28 15.07 4.42 4.42 Total: -1.00 -28.75 293.28 -8.61 -37.35 By element: Atomic # 1 Polarization: -1.58 SS G_CDS: -2.50 Total: -4.08 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -2.24 Total: -13.07 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.61 Total: -33.54 kcal Atomic # 8 Polarization: -3.10 SS G_CDS: 0.02 Total: -3.08 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -2.40 Total: -1.80 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.75 -8.61 -37.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071793642.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.637 kcal (2) G-P(sol) polarization free energy of solvation -28.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds