Wall clock time and date at job start Tue Mar 31 2020 05:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99448 * 2 1 4 4 H 1.48501 * 109.47042 * 270.00077 * 3 2 1 5 5 H 1.48494 * 109.47318 * 30.00591 * 3 2 1 6 6 H 1.48505 * 109.46802 * 150.00577 * 3 2 1 7 7 C 1.37880 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99732 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99950 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47390 * 180.02562 * 9 7 2 11 11 S 1.81000 * 109.47371 * 179.97438 * 10 9 7 12 12 C 1.76203 * 99.99956 * 179.97438 * 11 10 9 13 13 N 1.30950 * 124.96964 * 359.97438 * 12 11 10 14 14 C 1.36112 * 108.69239 * 180.02562 * 13 12 11 15 15 C 1.39565 * 133.63410 * 180.02562 * 14 13 12 16 16 C 1.37881 * 119.71747 * 179.97438 * 15 14 13 17 17 Cl 1.73605 * 119.81782 * 179.97438 * 16 15 14 18 18 C 1.38734 * 120.36211 * 359.95998 * 16 15 14 19 19 C 1.38029 * 120.45236 * 0.05803 * 18 16 15 20 20 C 1.38530 * 119.91846 * 359.95990 * 19 18 16 21 21 O 1.34503 * 124.97201 * 179.97438 * 12 11 10 22 22 H 0.96993 * 120.00281 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47521 * 59.99810 * 9 7 2 24 24 H 1.09003 * 109.47055 * 300.00366 * 9 7 2 25 25 H 1.08999 * 109.47221 * 59.99287 * 10 9 7 26 26 H 1.09004 * 109.46663 * 300.00407 * 10 9 7 27 27 H 1.07994 * 120.14247 * 359.71863 * 15 14 13 28 28 H 1.08005 * 119.77314 * 180.02562 * 18 16 15 29 29 H 1.08000 * 120.04298 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 16 1.3405 -5.2296 0.0002 12 6 2.6904 -6.3621 -0.0007 13 7 3.9551 -6.0224 -0.0021 14 6 4.7108 -7.1545 -0.0030 15 6 6.0856 -7.3946 -0.0041 16 6 6.5529 -8.6919 -0.0043 17 17 8.2625 -8.9936 -0.0063 18 6 5.6643 -9.7573 -0.0025 19 6 4.3025 -9.5324 -0.0018 20 6 3.8164 -8.2352 -0.0019 21 8 2.5726 -7.7020 0.0000 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8902 24 1 0.6249 -2.5570 0.8897 25 1 2.8722 -3.6042 0.8894 26 1 2.8721 -3.6042 -0.8905 27 1 6.7805 -6.5680 -0.0090 28 1 6.0407 -10.7696 -0.0022 29 1 3.6167 -10.3667 -0.0008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071793642.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:23 Heat of formation + Delta-G solvation = 4.049000 kcal Electronic energy + Delta-G solvation = -16218.834716 eV Core-core repulsion = 13259.587175 eV Total energy + Delta-G solvation = -2959.247542 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.017 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.34108 -39.39564 -37.40677 -36.05934 -35.74872 -33.01066 -31.76120 -30.97500 -27.43389 -25.56610 -24.33058 -23.19571 -23.08209 -19.62355 -19.04401 -18.71097 -18.09426 -18.06460 -16.53693 -16.50178 -15.69679 -15.50204 -15.38922 -15.28619 -14.45369 -14.18348 -13.85192 -13.69866 -13.15910 -13.00035 -12.92633 -12.55008 -12.48986 -12.19846 -12.19144 -11.93849 -11.80225 -11.66718 -11.23244 -10.61006 -10.33776 -9.82704 -8.84541 -8.24594 -6.36522 -0.64922 -0.46793 -0.16277 0.82172 0.99227 1.02878 1.43209 1.43337 1.54855 1.74981 2.31184 2.40790 3.09842 3.18560 3.42215 3.77332 3.96778 4.04188 4.13988 4.25687 4.32803 4.70753 4.76176 4.88565 4.92422 4.96170 5.24597 5.34080 5.41835 5.71304 6.08716 6.16192 6.75492 7.32549 8.86824 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.025571 B = 0.003309 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.728272 B = 8459.902855 C = 9534.185404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.041 3.959 10 C -0.077 4.077 11 S 0.058 5.942 12 C 0.222 3.778 13 N -0.508 5.508 14 C 0.017 3.983 15 C -0.069 4.069 16 C -0.029 4.029 17 Cl -0.043 7.043 18 C -0.075 4.075 19 C -0.065 4.065 20 C -0.012 4.012 21 O -0.199 6.199 22 H 0.267 0.733 23 H 0.012 0.988 24 H 0.012 0.988 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.147 0.853 28 H 0.191 0.809 29 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.694 -21.579 -0.013 24.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.082 0.918 9 C 0.001 3.999 10 C -0.225 4.225 11 S 0.292 5.708 12 C -0.096 4.096 13 N -0.243 5.243 14 C -0.097 4.097 15 C -0.090 4.090 16 C -0.057 4.057 17 Cl -0.014 7.014 18 C -0.094 4.094 19 C -0.084 4.084 20 C -0.065 4.065 21 O -0.092 6.092 22 H 0.076 0.924 23 H 0.031 0.969 24 H 0.031 0.969 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.165 0.835 28 H 0.208 0.792 29 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 10.694 -21.081 -0.009 23.639 hybrid contribution 1.230 0.810 -0.010 1.473 sum 11.924 -20.271 -0.018 23.518 Atomic orbital electron populations 1.70065 1.07622 1.28157 1.50696 1.25906 0.95800 1.03136 0.94352 0.85404 0.78595 0.78265 0.78540 1.19739 1.20580 1.18913 1.21421 0.93647 0.91015 1.51864 0.91759 1.18789 0.93579 0.90492 0.97016 1.23775 1.01455 0.91216 1.06075 1.86011 0.99950 0.95188 1.89619 1.28759 0.98182 0.83974 0.98636 1.71288 1.00403 1.29192 1.23411 1.20007 0.95782 0.88337 1.05598 1.20182 0.91252 0.97251 1.00336 1.20685 0.86683 0.93479 1.04896 1.98395 1.10323 1.95877 1.96811 1.21319 0.89908 1.00304 0.97864 1.20271 0.95923 0.91516 1.00687 1.21006 0.81600 0.97464 1.06381 1.84652 1.29871 1.19509 1.75185 0.92429 0.96924 0.96925 0.89441 0.89417 0.83535 0.79200 0.80289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.15 13.29 21.45 0.28 -53.87 15 2 C 0.01 0.40 5.46 84.66 0.46 0.86 15 3 Si 0.97 43.09 29.54 68.60 2.03 45.11 15 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 15 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 6 H -0.26 -11.37 7.11 99.48 0.71 -10.67 15 7 C -0.54 -29.59 9.11 25.60 0.23 -29.36 15 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 15 9 C 0.04 2.05 4.98 29.85 0.15 2.20 15 10 C -0.08 -3.17 5.08 71.98 0.37 -2.81 15 11 S 0.06 2.06 22.31 -56.49 -1.26 0.80 15 12 C 0.22 7.74 8.36 130.37 1.09 8.83 15 13 N -0.51 -18.43 10.63 -304.31 -3.23 -21.66 15 14 C 0.02 0.51 7.23 39.30 0.28 0.79 15 15 C -0.07 -1.69 9.87 22.51 0.22 -1.47 15 16 C -0.03 -0.53 6.31 22.30 0.14 -0.39 15 17 Cl -0.04 -0.67 28.94 -2.72 -0.08 -0.75 15 18 C -0.07 -1.02 9.81 22.34 0.22 -0.80 15 19 C -0.07 -1.10 10.06 22.29 0.22 -0.88 15 20 C -0.01 -0.32 7.42 22.84 0.17 -0.15 15 21 O -0.20 -6.27 10.79 -14.86 -0.16 -6.43 15 22 H 0.27 14.65 8.31 -92.71 -0.77 13.88 15 23 H 0.01 0.66 8.14 -2.39 -0.02 0.64 15 24 H 0.01 0.66 8.14 -2.39 -0.02 0.64 15 25 H 0.09 3.62 8.14 -2.40 -0.02 3.60 15 26 H 0.09 3.63 8.14 -2.39 -0.02 3.61 15 27 H 0.15 3.41 8.06 -2.91 -0.02 3.39 15 28 H 0.19 1.08 8.06 -2.91 -0.02 1.06 15 29 H 0.18 1.77 8.06 -2.91 -0.02 1.74 15 Total: -1.00 -63.51 293.28 2.32 -61.20 By element: Atomic # 1 Polarization: -2.42 SS G_CDS: 1.18 Total: -1.24 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 3.56 Total: -23.16 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -2.95 Total: -75.53 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.16 Total: -6.43 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.26 Total: 0.80 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -0.08 Total: -0.75 kcal Total: -63.51 2.32 -61.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071793642.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.244 kcal (2) G-P(sol) polarization free energy of solvation -63.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds