Wall clock time and date at job start Tue Mar 31 2020 05:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29225 * 124.78266 * 2 1 4 4 C 1.31261 * 117.33648 * 179.97438 * 3 2 1 5 5 C 1.50706 * 122.92434 * 179.97438 * 4 3 2 6 6 C 1.35552 * 114.14788 * 0.24579 * 4 3 2 7 7 C 1.46925 * 126.12572 * 179.72223 * 6 4 3 8 8 N 1.31588 * 126.32301 * 359.68805 * 7 6 4 9 9 N 1.28661 * 109.36931 * 179.86138 * 8 7 6 10 10 C 1.31395 * 109.45707 * 0.40865 * 9 8 7 11 11 S 1.76197 * 126.25482 * 179.72887 * 10 9 8 12 12 C 1.76198 * 100.00146 * 0.02801 * 11 10 9 13 13 H 1.08007 * 119.99983 * 359.97438 * 12 11 10 14 14 C 1.38555 * 120.00343 * 179.97438 * 12 11 10 15 15 N 1.31693 * 119.99958 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 119.99700 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47451 * 89.99816 * 16 14 12 18 18 H 1.48504 * 109.47219 * 209.99677 * 16 14 12 19 19 H 1.48502 * 109.47216 * 329.99535 * 16 14 12 20 20 O 1.34850 * 107.49207 * 359.75331 * 10 9 8 21 21 S 1.70943 * 124.78549 * 179.97438 * 2 1 3 22 22 H 1.08997 * 109.46823 * 89.99850 * 1 2 3 23 23 H 1.08997 * 109.47074 * 210.00488 * 1 2 3 24 24 H 1.09004 * 109.46728 * 330.00237 * 1 2 3 25 25 H 1.09001 * 109.46953 * 90.02532 * 5 4 3 26 26 H 1.09000 * 109.47318 * 210.02130 * 5 4 3 27 27 H 1.09000 * 109.47161 * 330.02760 * 5 4 3 28 28 H 0.97003 * 119.99672 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2442 1.0614 0.0000 4 6 3.5457 0.8912 0.0005 5 6 4.5219 2.0394 0.0000 6 6 3.9353 -0.4071 -0.0043 7 6 5.3209 -0.8957 -0.0107 8 7 6.4085 -0.1550 -0.0186 9 7 7.4444 -0.9181 -0.0195 10 6 7.0620 -2.1752 -0.0210 11 16 8.1181 -3.5855 -0.0294 12 6 9.6905 -2.7904 -0.0335 13 1 9.7503 -1.7120 -0.0311 14 6 10.8502 -3.5485 -0.0399 15 7 12.0254 -2.9541 -0.0435 16 14 10.7468 -5.4136 -0.0449 17 1 10.7142 -5.9039 -1.4462 18 1 11.9326 -5.9770 0.6492 19 1 9.5113 -5.8427 0.6585 20 8 5.7136 -2.1887 -0.0156 21 16 2.4822 -1.4039 0.0006 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5138 25 1 4.7572 2.3166 1.0276 26 1 5.4353 1.7396 -0.5136 27 1 4.0792 2.8925 -0.5141 28 1 12.8373 -3.4849 -0.0483 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071835526.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:06 Heat of formation + Delta-G solvation = 54.057544 kcal Electronic energy + Delta-G solvation = -16592.183744 eV Core-core repulsion = 13669.441193 eV Total energy + Delta-G solvation = -2922.742551 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.019 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.97530 -41.13165 -37.23543 -34.90180 -34.85552 -32.27943 -30.15992 -29.13087 -28.05694 -25.13402 -24.56794 -23.86882 -21.00385 -20.46020 -18.86548 -18.53301 -18.50938 -17.40008 -17.09934 -16.87089 -16.33377 -15.11199 -14.99176 -14.47786 -14.24956 -14.02688 -13.69833 -13.57153 -13.39650 -13.21318 -13.20168 -13.06966 -12.81101 -12.57540 -12.19509 -12.18598 -11.96480 -11.32412 -11.23388 -10.92162 -10.50612 -9.89854 -9.11303 -8.63910 -6.53076 -1.09161 -0.21118 -0.07588 0.20285 0.42802 1.18378 1.27062 1.30972 1.38275 1.58250 1.63962 2.06498 2.20818 2.74036 2.92010 3.18395 3.73820 3.88535 3.96023 4.15312 4.30853 4.52193 4.63573 4.66340 4.70261 4.86947 5.13247 5.29297 5.61381 6.20670 6.45479 6.68773 7.12574 8.49129 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.041302 B = 0.003968 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.773687 B = 7053.878369 C = 7711.197207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.074 3.926 3 N -0.491 5.491 4 C 0.141 3.859 5 C -0.089 4.089 6 C -0.223 4.223 7 C 0.215 3.785 8 N -0.275 5.275 9 N -0.327 5.327 10 C 0.140 3.860 11 S 0.185 5.815 12 C -0.576 4.576 13 H 0.077 0.923 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.906 3.094 17 H -0.246 1.246 18 H -0.246 1.246 19 H -0.214 1.214 20 O -0.215 6.215 21 S 0.214 5.786 22 H 0.112 0.888 23 H 0.110 0.890 24 H 0.103 0.897 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.686 -0.223 0.173 23.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.202 4.202 3 N -0.207 5.207 4 C 0.002 3.998 5 C -0.148 4.148 6 C -0.345 4.345 7 C 0.000 4.000 8 N -0.124 5.124 9 N -0.179 5.179 10 C -0.174 4.174 11 S 0.418 5.582 12 C -0.724 4.724 13 H 0.096 0.904 14 C -0.153 4.153 15 N -0.531 5.531 16 Si 0.724 3.276 17 H -0.170 1.170 18 H -0.169 1.169 19 H -0.138 1.138 20 O -0.099 6.099 21 S 0.471 5.529 22 H 0.131 0.869 23 H 0.129 0.871 24 H 0.122 0.878 25 H 0.106 0.894 26 H 0.097 0.903 27 H 0.115 0.885 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.357 -1.018 0.168 23.380 hybrid contribution 1.171 0.782 -0.015 1.408 sum -22.186 -0.236 0.153 22.188 Atomic orbital electron populations 1.20845 0.80852 1.06364 1.06119 1.28232 1.03921 0.90305 0.97779 1.66280 1.03113 1.32074 1.19247 1.20830 0.90944 0.92879 0.95187 1.20638 0.95987 0.94064 1.04136 1.22384 0.90859 0.97750 1.23509 1.24008 0.95056 0.77517 1.03419 1.74550 0.93977 1.26929 1.16918 1.75012 1.21587 0.98972 1.22354 1.30717 0.81966 1.02590 1.02114 1.82551 0.94727 0.95473 1.85418 1.22671 0.90294 0.98027 1.61392 0.90443 1.25644 0.93208 1.04814 0.91656 1.70037 0.98538 1.39231 1.45281 0.86062 0.82397 0.77503 0.81605 1.16979 1.16912 1.13784 1.84977 1.22005 1.30130 1.72813 1.83882 0.92688 1.09582 1.66737 0.86934 0.87134 0.87826 0.89442 0.90320 0.88530 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.46 71.24 0.75 0.11 15 2 C 0.07 1.35 7.38 88.49 0.65 2.00 15 3 N -0.49 -12.04 10.50 -178.29 -1.87 -13.91 15 4 C 0.14 4.07 6.80 42.02 0.29 4.35 15 5 C -0.09 -2.43 9.82 71.24 0.70 -1.74 15 6 C -0.22 -7.01 6.50 23.93 0.16 -6.85 15 7 C 0.21 8.58 8.16 87.01 0.71 9.29 15 8 N -0.28 -12.51 9.88 -166.27 -1.64 -14.15 15 9 N -0.33 -16.85 11.05 -171.57 -1.90 -18.75 15 10 C 0.14 6.67 8.51 130.31 1.11 7.78 15 11 S 0.19 8.55 19.85 -56.49 -1.12 7.43 15 12 C -0.58 -32.68 9.90 67.90 0.67 -32.01 15 13 H 0.08 5.04 7.15 -2.91 -0.02 5.02 15 14 C 0.06 3.02 5.49 84.79 0.47 3.49 15 15 N -0.90 -52.01 13.97 21.60 0.30 -51.71 15 16 Si 0.91 37.37 27.73 68.60 1.90 39.27 15 17 H -0.25 -9.68 7.11 99.48 0.71 -8.97 15 18 H -0.25 -9.56 7.11 99.48 0.71 -8.86 15 19 H -0.21 -8.01 6.73 99.48 0.67 -7.34 15 20 O -0.22 -9.05 10.93 -16.27 -0.18 -9.23 15 21 S 0.21 4.62 23.16 -56.49 -1.31 3.31 15 22 H 0.11 0.52 8.14 -2.39 -0.02 0.50 15 23 H 0.11 0.35 8.14 -2.39 -0.02 0.34 15 24 H 0.10 0.71 8.14 -2.39 -0.02 0.69 15 25 H 0.09 2.27 8.14 -2.39 -0.02 2.25 15 26 H 0.08 2.53 6.08 -2.39 -0.01 2.52 15 27 H 0.10 2.17 8.14 -2.39 -0.02 2.15 15 28 H 0.29 15.00 8.32 -92.71 -0.77 14.23 15 Total: -1.00 -69.63 283.31 0.86 -68.77 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: 1.18 Total: 2.53 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 5.50 Total: -13.56 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -5.11 Total: -98.52 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.18 Total: -9.23 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 1.90 Total: 39.27 kcal Atomic # 16 Polarization: 13.17 SS G_CDS: -2.43 Total: 10.74 kcal Total: -69.63 0.86 -68.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071835526.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.827 kcal (2) G-P(sol) polarization free energy of solvation -69.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds