Wall clock time and date at job start Tue Mar 31 2020 05:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86807 * 119.99820 * 2 1 4 4 H 1.48500 * 109.47107 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47061 * 299.99647 * 3 2 1 6 6 H 1.48500 * 109.47247 * 59.99982 * 3 2 1 7 7 C 1.38953 * 120.00472 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00128 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99648 * 0.02562 * 7 2 1 10 10 C 1.34773 * 119.99907 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00309 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99788 * 180.02562 * 10 9 7 13 13 H 1.09000 * 115.56138 * 325.67871 * 12 10 9 14 14 C 1.53003 * 117.49974 * 111.37668 * 12 10 9 15 15 C 1.53006 * 117.49713 * 179.97438 * 12 10 9 16 16 H 1.08992 * 117.49769 * 145.01631 * 15 12 10 17 17 C 1.50697 * 117.49697 * 359.97438 * 15 12 10 18 18 C 1.38459 * 120.01765 * 258.11604 * 17 15 12 19 19 F 1.35097 * 120.02283 * 359.97438 * 18 17 15 20 20 C 1.38456 * 119.95665 * 179.70151 * 18 17 15 21 21 C 1.38214 * 120.00239 * 0.57638 * 20 18 17 22 22 C 1.38203 * 120.04057 * 359.72003 * 21 20 18 23 23 C 1.38291 * 120.02219 * 78.39244 * 17 15 12 24 24 Cl 1.73599 * 119.99900 * 359.97438 * 23 17 15 25 25 H 0.97002 * 120.00047 * 359.97438 * 1 2 3 26 26 H 0.97007 * 119.99868 * 359.97438 * 9 7 2 27 27 H 1.08996 * 117.49612 * 359.97438 * 14 12 10 28 28 H 1.09004 * 117.49599 * 214.97573 * 14 12 10 29 29 H 1.08002 * 119.99521 * 180.29642 * 20 18 17 30 30 H 1.08000 * 119.98176 * 179.70190 * 21 20 18 31 31 H 1.08005 * 119.98402 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0010 13 1 0.3047 -4.8640 0.5543 14 6 1.3205 -5.7224 -1.2625 15 6 2.0660 -6.1533 0.0016 16 1 1.6679 -7.0034 0.5556 17 6 3.5672 -6.0218 0.0022 18 6 4.2793 -6.2076 -1.1707 19 9 3.6287 -6.5074 -2.3161 20 6 5.6580 -6.0804 -1.1700 21 6 6.3237 -5.7799 0.0034 22 6 5.6136 -5.6005 1.1753 23 6 4.2350 -5.7212 1.1753 24 17 3.3438 -5.4944 2.6477 25 1 -0.4850 0.8401 0.0004 26 1 0.3534 -2.3906 0.0005 27 1 1.9155 -5.3436 -2.0934 28 1 0.4317 -6.2889 -1.5405 29 1 6.2135 -6.2205 -2.0855 30 1 7.3996 -5.6855 0.0045 31 1 6.1347 -5.3653 2.0916 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076984930.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:35 Heat of formation + Delta-G solvation = -51.218765 kcal Electronic energy + Delta-G solvation = -19996.955337 eV Core-core repulsion = 16604.931124 eV Total energy + Delta-G solvation = -3392.024214 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.89525 -40.93463 -39.53139 -37.34505 -37.26017 -35.72627 -33.20243 -31.65040 -31.20183 -27.55305 -24.99674 -24.44540 -23.55000 -22.04388 -20.59599 -19.69477 -18.65776 -18.14068 -17.33537 -16.84849 -16.60745 -16.25942 -16.01670 -15.66195 -15.54258 -15.00269 -14.83218 -14.38341 -13.99477 -13.76521 -13.49307 -13.05753 -12.94509 -12.84032 -12.38561 -12.22236 -12.14552 -12.11768 -11.82924 -11.55176 -11.34465 -11.32349 -10.34693 -9.95887 -9.52939 -9.33461 -8.44193 -5.90981 0.18256 0.25183 1.24282 1.34849 1.39857 1.53787 1.96518 2.29227 2.57006 2.80235 3.14956 3.31149 3.39472 3.61601 3.92044 3.93168 4.04946 4.16179 4.33831 4.39058 4.53403 4.65273 4.82185 4.88363 5.05457 5.09368 5.20401 5.26486 5.33359 5.43494 5.90236 6.03553 6.63454 7.16198 7.62476 8.17706 8.74061 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.018609 B = 0.005877 C = 0.005729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.283047 B = 4763.485668 C = 4886.305937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.017 4.017 3 Si 0.989 3.011 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.321 4.321 8 H 0.080 0.920 9 N -0.574 5.574 10 C 0.471 3.529 11 O -0.599 6.599 12 C -0.169 4.169 13 H 0.134 0.866 14 C -0.135 4.135 15 C -0.093 4.093 16 H 0.147 0.853 17 C -0.057 4.057 18 C 0.089 3.911 19 F -0.140 7.140 20 C -0.156 4.156 21 C -0.085 4.085 22 C -0.131 4.131 23 C 0.010 3.990 24 Cl -0.069 7.069 25 H 0.275 0.725 26 H 0.392 0.608 27 H 0.084 0.916 28 H 0.138 0.862 29 H 0.158 0.842 30 H 0.172 0.828 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.596 -13.795 0.508 15.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.216 4.216 3 Si 0.813 3.187 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.451 4.451 8 H 0.098 0.902 9 N -0.211 5.211 10 C 0.258 3.742 11 O -0.484 6.484 12 C -0.190 4.190 13 H 0.152 0.848 14 C -0.173 4.173 15 C -0.112 4.112 16 H 0.164 0.836 17 C -0.059 4.059 18 C 0.070 3.930 19 F -0.118 7.118 20 C -0.175 4.175 21 C -0.103 4.103 22 C -0.150 4.150 23 C -0.017 4.017 24 Cl -0.040 7.040 25 H 0.085 0.915 26 H 0.226 0.774 27 H 0.102 0.898 28 H 0.156 0.844 29 H 0.176 0.824 30 H 0.189 0.811 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.161 -13.611 0.599 15.391 hybrid contribution -0.683 1.140 0.002 1.329 sum 6.479 -12.471 0.601 14.066 Atomic orbital electron populations 1.69690 1.06857 1.28972 1.51071 1.26001 0.96480 1.02326 0.96755 0.84924 0.78120 0.77438 0.78198 1.19691 1.19785 1.19770 1.19655 0.92551 0.83868 1.49018 0.90242 1.41892 1.09131 1.04658 1.65379 1.19735 0.87777 0.84830 0.81849 1.90521 1.14603 1.87299 1.56027 1.22239 1.01649 0.89618 1.05496 0.84822 1.23240 1.03002 1.00597 0.90440 1.20972 0.88857 0.97825 1.03500 0.83551 1.18836 0.94786 1.00709 0.91582 1.17483 0.91122 1.03303 0.81137 1.91416 1.81770 1.90812 1.47821 1.21429 0.91754 1.02963 1.01314 1.21193 1.01646 0.97209 0.90210 1.21309 0.91512 1.01310 1.00821 1.20446 0.92515 1.01424 0.87305 1.98335 1.76262 1.95431 1.33987 0.91521 0.77430 0.89767 0.84365 0.82434 0.81064 0.83347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.12 13.05 21.66 0.28 -50.84 16 2 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 3 Si 0.99 43.76 29.55 68.60 2.03 45.79 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.32 -18.39 9.68 84.04 0.81 -17.58 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 N -0.57 -30.07 5.29 -306.99 -1.62 -31.69 16 10 C 0.47 22.31 7.54 87.66 0.66 22.97 16 11 O -0.60 -30.99 12.55 -3.05 -0.04 -31.03 16 12 C -0.17 -6.03 6.17 -11.53 -0.07 -6.10 16 13 H 0.13 4.19 8.14 -2.39 -0.02 4.17 16 14 C -0.14 -4.13 8.92 30.58 0.27 -3.86 16 15 C -0.09 -2.91 4.91 -11.55 -0.06 -2.97 16 16 H 0.15 3.69 8.14 -2.39 -0.02 3.67 16 17 C -0.06 -1.97 3.40 -19.80 -0.07 -2.03 16 18 C 0.09 2.92 7.06 22.37 0.16 3.08 16 19 F -0.14 -4.54 14.35 44.97 0.65 -3.90 16 20 C -0.16 -4.27 10.03 22.32 0.22 -4.05 16 21 C -0.08 -2.10 10.04 22.26 0.22 -1.88 16 22 C -0.13 -3.77 9.83 22.30 0.22 -3.56 16 23 C 0.01 0.33 4.78 22.32 0.11 0.44 16 24 Cl -0.07 -2.29 27.97 -2.72 -0.08 -2.36 16 25 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 26 H 0.39 20.00 7.90 -92.70 -0.73 19.26 16 27 H 0.08 2.97 6.38 -2.39 -0.02 2.96 16 28 H 0.14 3.14 8.14 -2.38 -0.02 3.12 16 29 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 30 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 31 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -66.55 290.30 4.62 -61.92 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.45 Total: 28.07 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 2.95 Total: -15.96 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -1.34 Total: -82.53 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.04 Total: -31.03 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.65 Total: -3.90 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -0.08 Total: -2.36 kcal Total: -66.55 4.62 -61.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076984930.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.704 kcal (2) G-P(sol) polarization free energy of solvation -66.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds