Wall clock time and date at job start Tue Mar 31 2020 05:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86801 * 120.00027 * 2 1 4 4 H 1.48492 * 109.47192 * 270.00073 * 3 2 1 5 5 H 1.48507 * 109.46934 * 30.00341 * 3 2 1 6 6 H 1.48505 * 109.46944 * 149.99593 * 3 2 1 7 7 C 1.38945 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00212 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00071 * 179.97438 * 7 2 1 10 10 C 1.34782 * 119.99889 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99760 * 0.02562 * 10 9 7 12 12 C 1.50692 * 119.99893 * 179.97438 * 10 9 7 13 13 H 1.08999 * 115.56445 * 325.69510 * 12 10 9 14 14 C 1.53006 * 117.49847 * 111.37695 * 12 10 9 15 15 C 1.53006 * 117.50086 * 180.02562 * 12 10 9 16 16 H 1.08998 * 117.49233 * 0.02562 * 15 12 10 17 17 C 1.50696 * 117.50108 * 145.02309 * 15 12 10 18 18 C 1.38460 * 120.01916 * 17.60118 * 17 15 12 19 19 F 1.35102 * 120.01753 * 359.97438 * 18 17 15 20 20 C 1.38444 * 119.96115 * 179.70475 * 18 17 15 21 21 C 1.38223 * 120.00237 * 0.56708 * 20 18 17 22 22 C 1.38208 * 120.03488 * 359.72753 * 21 20 18 23 23 C 1.38286 * 120.02001 * 197.87688 * 17 15 12 24 24 Cl 1.73602 * 120.00077 * 359.97438 * 23 17 15 25 25 H 0.97003 * 120.00455 * 359.97438 * 1 2 3 26 26 H 0.96994 * 119.99995 * 0.02562 * 9 7 2 27 27 H 1.08999 * 117.49741 * 0.02562 * 14 12 10 28 28 H 1.08992 * 117.50263 * 214.97674 * 14 12 10 29 29 H 1.07999 * 120.00097 * 180.29640 * 20 18 17 30 30 H 1.07993 * 119.98212 * 179.70489 * 21 20 18 31 31 H 1.07998 * 119.97464 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6527 0.7002 6 1 3.5456 1.4401 0.7002 7 6 2.0088 -1.2033 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3706 0.0000 11 8 3.4471 -3.4210 0.0000 12 6 5.5606 -2.3706 -0.0012 13 1 6.0305 -1.5586 -0.5561 14 6 6.2680 -2.8647 1.2623 15 6 6.2671 -3.7277 -0.0017 16 1 5.6418 -4.6205 -0.0017 17 6 7.5593 -3.8392 -0.7690 18 6 8.2531 -2.6958 -1.1272 19 9 7.7717 -1.4795 -0.7894 20 6 9.4433 -2.7998 -1.8267 21 6 9.9324 -4.0442 -2.1774 22 6 9.2367 -5.1853 -1.8251 23 6 8.0500 -5.0833 -1.1206 24 17 7.1776 -6.5174 -0.6777 25 1 -0.4851 0.8400 0.0004 26 1 3.8648 -0.3633 -0.0004 27 1 5.6434 -3.1902 2.0942 28 1 7.2033 -2.3779 1.5385 29 1 9.9874 -1.9085 -2.1022 30 1 10.8584 -4.1247 -2.7272 31 1 9.6195 -6.1570 -2.1000 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076984931.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:39 Heat of formation + Delta-G solvation = -28.025055 kcal Electronic energy + Delta-G solvation = -19295.826908 eV Core-core repulsion = 15904.808450 eV Total energy + Delta-G solvation = -3391.018459 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.30897 -39.71914 -38.58220 -36.57927 -36.07082 -33.88285 -31.64369 -30.98913 -30.58734 -25.78983 -24.00488 -23.08334 -22.63888 -20.93220 -19.32837 -18.41195 -17.86040 -17.06402 -16.12458 -15.87935 -15.56419 -14.95870 -14.90175 -14.51592 -14.01204 -13.63995 -13.51823 -13.47916 -12.88230 -12.59499 -12.27290 -12.18298 -11.69172 -11.57992 -11.41416 -11.21712 -10.83963 -10.62122 -10.52403 -10.11153 -9.96415 -9.54196 -8.96556 -8.75324 -8.49167 -8.17164 -6.30750 -3.81502 0.73150 0.78625 1.90923 3.04060 3.09217 3.10538 3.16970 3.52506 3.96988 4.11486 4.18251 4.34038 4.48948 4.56673 4.78624 4.90742 5.10732 5.16811 5.24878 5.39633 5.51718 5.61688 5.68183 5.83337 5.89903 5.91349 6.06830 6.31346 6.42372 6.48085 7.58323 8.15779 8.60591 8.95123 9.44094 9.85048 10.82183 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.024896 B = 0.004660 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.390183 B = 6007.198101 C = 6836.731840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.043 3.957 3 Si 0.878 3.122 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.582 5.582 10 C 0.477 3.523 11 O -0.577 6.577 12 C -0.177 4.177 13 H 0.138 0.862 14 C -0.139 4.139 15 C -0.106 4.106 16 H 0.138 0.862 17 C -0.064 4.064 18 C 0.109 3.891 19 F -0.122 7.122 20 C -0.146 4.146 21 C -0.090 4.090 22 C -0.118 4.118 23 C -0.007 4.007 24 Cl -0.048 7.048 25 H 0.274 0.726 26 H 0.372 0.628 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.959 -5.576 -2.828 23.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.160 4.160 3 Si 0.704 3.296 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.138 0.862 9 N -0.219 5.219 10 C 0.263 3.737 11 O -0.461 6.461 12 C -0.198 4.198 13 H 0.155 0.845 14 C -0.176 4.176 15 C -0.124 4.124 16 H 0.156 0.844 17 C -0.066 4.066 18 C 0.089 3.911 19 F -0.100 7.100 20 C -0.165 4.165 21 C -0.108 4.108 22 C -0.137 4.137 23 C -0.033 4.033 24 Cl -0.019 7.019 25 H 0.084 0.916 26 H 0.205 0.795 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 22.208 -6.227 -2.773 23.230 hybrid contribution 0.366 1.541 0.037 1.584 sum 22.573 -4.686 -2.736 23.216 Atomic orbital electron populations 1.69620 1.05656 1.27557 1.49135 1.25030 0.95490 0.97998 0.97498 0.86691 0.79946 0.83966 0.79025 1.19527 1.20096 1.19270 1.19466 0.79218 0.96692 1.48065 0.86238 1.42125 1.07418 1.06162 1.66171 1.18848 0.86667 0.84418 0.83753 1.90549 1.69389 1.31165 1.55011 1.22963 0.94807 0.98590 1.03487 0.84512 1.22992 1.01832 1.01519 0.91301 1.21055 0.93877 0.97540 0.99956 0.84411 1.19160 0.96598 0.90814 1.00019 1.17359 0.94127 0.79750 0.99831 1.91363 1.86753 1.41519 1.90414 1.21236 0.95351 0.99719 1.00182 1.20908 0.99967 0.90803 0.99153 1.21105 0.93663 1.00141 0.98748 1.20493 0.94591 0.87571 1.00694 1.98398 1.75795 1.36239 1.91453 0.91575 0.79459 0.87507 0.88438 0.84077 0.84110 0.84214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.02 13.96 55.50 0.77 -25.25 16 2 C 0.04 1.20 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 19.80 27.74 -169.99 -4.71 15.09 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.56 6.52 56.52 0.37 -5.20 16 7 C -0.31 -8.88 10.16 -14.93 -0.15 -9.03 16 8 H 0.12 3.94 7.39 -52.48 -0.39 3.55 16 9 N -0.58 -14.54 5.09 -10.96 -0.06 -14.59 16 10 C 0.48 11.48 7.57 -10.99 -0.08 11.39 16 11 O -0.58 -16.11 15.83 5.54 0.09 -16.02 16 12 C -0.18 -3.26 5.32 -91.77 -0.49 -3.75 16 13 H 0.14 2.31 5.13 -51.93 -0.27 2.04 16 14 C -0.14 -2.16 9.51 -26.70 -0.25 -2.41 16 15 C -0.11 -1.74 5.20 -91.74 -0.48 -2.22 16 16 H 0.14 2.52 6.43 -51.93 -0.33 2.19 16 17 C -0.06 -0.88 5.65 -104.52 -0.59 -1.47 16 18 C 0.11 1.35 7.05 -39.42 -0.28 1.07 16 19 F -0.12 -1.63 12.92 2.25 0.03 -1.60 16 20 C -0.15 -1.35 10.03 -39.51 -0.40 -1.74 16 21 C -0.09 -0.70 10.04 -39.60 -0.40 -1.09 16 22 C -0.12 -1.06 9.83 -39.54 -0.39 -1.45 16 23 C -0.01 -0.08 6.31 -39.51 -0.25 -0.33 16 24 Cl -0.05 -0.60 27.29 -51.86 -1.42 -2.01 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.37 8.27 5.76 -40.82 -0.24 8.04 16 27 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 28 H 0.10 1.28 7.88 -51.93 -0.41 0.87 16 29 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 31 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 288.93 15.07 4.35 4.35 Total: -1.00 -32.86 288.93 -7.28 -40.14 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -2.49 Total: 9.82 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -3.85 Total: -9.93 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.72 Total: -39.84 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.09 Total: -16.02 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.03 Total: -1.60 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.71 Total: 15.09 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.42 Total: -2.01 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.86 -7.28 -40.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076984931.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.116 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds