Wall clock time and date at job start Tue Mar 31 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86801 * 120.00027 * 2 1 4 4 H 1.48492 * 109.47192 * 270.00073 * 3 2 1 5 5 H 1.48507 * 109.46934 * 30.00341 * 3 2 1 6 6 H 1.48505 * 109.46944 * 149.99593 * 3 2 1 7 7 C 1.38945 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00212 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00071 * 179.97438 * 7 2 1 10 10 C 1.34782 * 119.99889 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99760 * 0.02562 * 10 9 7 12 12 C 1.50692 * 119.99893 * 179.97438 * 10 9 7 13 13 H 1.08999 * 115.56445 * 325.69510 * 12 10 9 14 14 C 1.53006 * 117.49847 * 111.37695 * 12 10 9 15 15 C 1.53006 * 117.50086 * 180.02562 * 12 10 9 16 16 H 1.08998 * 117.49233 * 0.02562 * 15 12 10 17 17 C 1.50696 * 117.50108 * 145.02309 * 15 12 10 18 18 C 1.38460 * 120.01916 * 17.60118 * 17 15 12 19 19 F 1.35102 * 120.01753 * 359.97438 * 18 17 15 20 20 C 1.38444 * 119.96115 * 179.70475 * 18 17 15 21 21 C 1.38223 * 120.00237 * 0.56708 * 20 18 17 22 22 C 1.38208 * 120.03488 * 359.72753 * 21 20 18 23 23 C 1.38286 * 120.02001 * 197.87688 * 17 15 12 24 24 Cl 1.73602 * 120.00077 * 359.97438 * 23 17 15 25 25 H 0.97003 * 120.00455 * 359.97438 * 1 2 3 26 26 H 0.96994 * 119.99995 * 0.02562 * 9 7 2 27 27 H 1.08999 * 117.49741 * 0.02562 * 14 12 10 28 28 H 1.08992 * 117.50263 * 214.97674 * 14 12 10 29 29 H 1.07999 * 120.00097 * 180.29640 * 20 18 17 30 30 H 1.07993 * 119.98212 * 179.70489 * 21 20 18 31 31 H 1.07998 * 119.97464 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6527 0.7002 6 1 3.5456 1.4401 0.7002 7 6 2.0088 -1.2033 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3706 0.0000 11 8 3.4471 -3.4210 0.0000 12 6 5.5606 -2.3706 -0.0012 13 1 6.0305 -1.5586 -0.5561 14 6 6.2680 -2.8647 1.2623 15 6 6.2671 -3.7277 -0.0017 16 1 5.6418 -4.6205 -0.0017 17 6 7.5593 -3.8392 -0.7690 18 6 8.2531 -2.6958 -1.1272 19 9 7.7717 -1.4795 -0.7894 20 6 9.4433 -2.7998 -1.8267 21 6 9.9324 -4.0442 -2.1774 22 6 9.2367 -5.1853 -1.8251 23 6 8.0500 -5.0833 -1.1206 24 17 7.1776 -6.5174 -0.6777 25 1 -0.4851 0.8400 0.0004 26 1 3.8648 -0.3633 -0.0004 27 1 5.6434 -3.1902 2.0942 28 1 7.2033 -2.3779 1.5385 29 1 9.9874 -1.9085 -2.1022 30 1 10.8584 -4.1247 -2.7272 31 1 9.6195 -6.1570 -2.1000 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076984931.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:38 Heat of formation + Delta-G solvation = -49.412285 kcal Electronic energy + Delta-G solvation = -19296.754328 eV Core-core repulsion = 15904.808450 eV Total energy + Delta-G solvation = -3391.945879 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.22329 -40.94949 -40.02883 -37.54424 -37.44755 -35.98445 -33.79947 -31.88172 -31.37401 -27.75771 -25.04984 -24.31801 -23.87381 -21.99772 -21.29232 -20.25461 -18.74136 -18.45591 -17.29099 -16.87645 -16.83248 -16.66008 -15.82394 -15.71863 -15.65033 -15.11322 -15.02585 -14.64391 -14.42163 -14.19390 -13.60288 -13.17832 -13.03925 -12.96983 -12.49001 -12.46774 -12.35959 -12.00873 -11.88668 -11.64795 -11.63804 -11.42370 -10.52232 -10.31853 -9.75352 -9.65356 -8.47034 -6.08447 -0.05324 -0.00731 1.04703 1.27620 1.30640 1.41442 1.71653 2.18756 2.33663 2.70308 2.87366 3.12873 3.21270 3.44380 3.56392 3.85000 3.90472 3.96346 4.21980 4.26032 4.34165 4.50426 4.62271 4.82930 4.88324 5.01406 5.12854 5.19931 5.23162 5.49307 5.72144 5.87984 6.51424 6.79163 7.31416 7.86484 8.70367 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.024896 B = 0.004660 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.390183 B = 6007.198101 C = 6836.731840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.961 3.039 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.235 1.235 7 C -0.335 4.335 8 H 0.057 0.943 9 N -0.581 5.581 10 C 0.475 3.525 11 O -0.627 6.627 12 C -0.190 4.190 13 H 0.160 0.840 14 C -0.120 4.120 15 C -0.099 4.099 16 H 0.110 0.890 17 C -0.091 4.091 18 C 0.092 3.908 19 F -0.131 7.131 20 C -0.137 4.137 21 C -0.071 4.071 22 C -0.112 4.112 23 C -0.021 4.021 24 Cl -0.066 7.066 25 H 0.282 0.718 26 H 0.390 0.610 27 H 0.096 0.904 28 H 0.131 0.869 29 H 0.170 0.830 30 H 0.185 0.815 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.607 -3.691 -3.705 28.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.208 4.208 3 Si 0.781 3.219 4 H -0.179 1.179 5 H -0.193 1.193 6 H -0.159 1.159 7 C -0.463 4.463 8 H 0.075 0.925 9 N -0.220 5.220 10 C 0.263 3.737 11 O -0.513 6.513 12 C -0.211 4.211 13 H 0.177 0.823 14 C -0.157 4.157 15 C -0.118 4.118 16 H 0.128 0.872 17 C -0.092 4.092 18 C 0.072 3.928 19 F -0.110 7.110 20 C -0.155 4.155 21 C -0.088 4.088 22 C -0.130 4.130 23 C -0.048 4.048 24 Cl -0.036 7.036 25 H 0.091 0.909 26 H 0.226 0.774 27 H 0.115 0.885 28 H 0.149 0.851 29 H 0.188 0.812 30 H 0.203 0.797 31 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 26.876 -4.349 -3.647 27.468 hybrid contribution -1.064 0.792 0.259 1.351 sum 25.812 -3.557 -3.388 26.275 Atomic orbital electron populations 1.69787 1.08033 1.29465 1.49574 1.26086 0.96475 1.02591 0.95680 0.85416 0.79488 0.76838 0.80189 1.17888 1.19310 1.15858 1.19052 0.81212 0.95174 1.50906 0.92528 1.41955 1.05916 1.07381 1.66716 1.19939 0.89240 0.83306 0.81211 1.90517 1.71323 1.32941 1.56529 1.22848 0.90302 1.01190 1.06740 0.82343 1.23098 1.02140 1.00347 0.90124 1.20947 0.94816 0.95234 1.00754 0.87174 1.19014 0.95965 0.92360 1.01907 1.17601 0.95320 0.78817 1.01030 1.91307 1.87035 1.41928 1.90707 1.21628 0.93896 1.01587 0.98399 1.21450 1.00612 0.89417 0.97343 1.21494 0.92211 1.02138 0.97179 1.20710 0.95756 0.86483 1.01866 1.98392 1.76471 1.37044 1.91741 0.90880 0.77432 0.88544 0.85111 0.81204 0.79743 0.81697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.96 21.66 0.30 -56.61 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 3 Si 0.96 40.13 27.74 68.60 1.90 42.03 16 4 H -0.25 -10.04 7.11 99.48 0.71 -9.34 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 6 H -0.24 -8.53 6.52 99.48 0.65 -7.89 16 7 C -0.33 -20.48 10.16 84.04 0.85 -19.63 16 8 H 0.06 4.09 7.39 -2.91 -0.02 4.06 16 9 N -0.58 -29.71 5.09 -306.98 -1.56 -31.27 16 10 C 0.47 23.75 7.57 87.65 0.66 24.42 16 11 O -0.63 -37.42 15.83 -3.08 -0.05 -37.47 16 12 C -0.19 -6.97 5.32 -11.54 -0.06 -7.03 16 13 H 0.16 5.12 5.13 -2.39 -0.01 5.11 16 14 C -0.12 -3.64 9.51 30.62 0.29 -3.35 16 15 C -0.10 -3.27 5.20 -11.52 -0.06 -3.33 16 16 H 0.11 4.26 6.43 -2.39 -0.02 4.25 16 17 C -0.09 -2.37 5.65 -19.80 -0.11 -2.48 16 18 C 0.09 2.01 7.05 22.37 0.16 2.16 16 19 F -0.13 -3.14 12.92 44.97 0.58 -2.56 16 20 C -0.14 -1.88 10.03 22.32 0.22 -1.65 16 21 C -0.07 -0.71 10.04 22.26 0.22 -0.49 16 22 C -0.11 -1.60 9.83 22.30 0.22 -1.38 16 23 C -0.02 -0.48 6.31 22.32 0.14 -0.34 16 24 Cl -0.07 -1.63 27.29 -2.72 -0.07 -1.71 16 25 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 26 H 0.39 16.89 5.76 -92.71 -0.53 16.36 16 27 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 28 H 0.13 3.10 7.88 -2.39 -0.02 3.08 16 29 H 0.17 1.37 8.06 -2.91 -0.02 1.34 16 30 H 0.19 0.33 8.06 -2.91 -0.02 0.30 16 31 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -78.86 288.93 4.71 -74.16 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.60 Total: 26.56 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 3.01 Total: -13.13 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -1.26 Total: -87.88 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -0.05 Total: -37.47 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.58 Total: -2.56 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 1.90 Total: 42.03 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.07 Total: -1.71 kcal Total: -78.86 4.71 -74.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076984931.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.745 kcal (2) G-P(sol) polarization free energy of solvation -78.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds