Wall clock time and date at job start Tue Mar 31 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 120.00096 * 2 1 4 4 H 1.48500 * 109.47279 * 239.99835 * 3 2 1 5 5 H 1.48495 * 109.47372 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47219 * 120.00263 * 3 2 1 7 7 C 1.38956 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00215 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99889 * 179.97438 * 9 7 2 11 11 O 1.21283 * 119.99938 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99731 * 180.02562 * 10 9 7 13 13 H 1.08998 * 115.56342 * 34.30738 * 12 10 9 14 14 C 1.53000 * 117.49886 * 248.62248 * 12 10 9 15 15 C 1.53000 * 117.49842 * 179.97438 * 12 10 9 16 16 H 1.09002 * 117.49614 * 359.97438 * 15 12 10 17 17 C 1.50701 * 117.52066 * 214.96780 * 15 12 10 18 18 C 1.38463 * 120.01681 * 342.00466 * 17 15 12 19 19 F 1.35100 * 120.01927 * 359.97438 * 18 17 15 20 20 C 1.38450 * 119.95967 * 179.72068 * 18 17 15 21 21 C 1.38230 * 119.99931 * 0.52698 * 20 18 17 22 22 C 1.38206 * 120.03971 * 359.76478 * 21 20 18 23 23 C 1.38291 * 120.02167 * 162.27383 * 17 15 12 24 24 Cl 1.73601 * 119.99944 * 0.02562 * 23 17 15 25 25 H 0.96998 * 119.99710 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99465 * 359.97438 * 9 7 2 27 27 H 1.08994 * 117.50199 * 145.02228 * 14 12 10 28 28 H 1.09002 * 117.49891 * 359.97438 * 14 12 10 29 29 H 1.08002 * 119.99976 * 180.27793 * 20 18 17 30 30 H 1.08000 * 119.97998 * 179.75186 * 21 20 18 31 31 H 1.07994 * 119.98295 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0016 10 6 1.9973 -3.5579 -0.0026 11 8 3.2101 -3.5578 -0.0031 12 6 1.2438 -4.8629 -0.0044 13 1 0.3054 -4.8635 -0.5590 14 6 1.3185 -5.7235 1.2584 15 6 2.0658 -6.1533 -0.0061 16 1 3.1517 -6.0582 -0.0064 17 6 1.5163 -7.3280 -0.7737 18 6 0.1772 -7.3611 -1.1242 19 9 -0.6376 -6.3406 -0.7779 20 6 -0.3252 -8.4382 -1.8344 21 6 0.5075 -9.4848 -2.1836 22 6 1.8428 -9.4546 -1.8284 23 6 2.3479 -8.3761 -1.1235 24 17 4.0253 -8.3392 -0.6778 25 1 -0.4850 0.8401 0.0004 26 1 0.3534 -2.3906 -0.0016 27 1 0.4293 -6.2902 1.5346 28 1 1.9130 -5.3459 2.0904 29 1 -1.3687 -8.4626 -2.1120 30 1 0.1144 -10.3267 -2.7341 31 1 2.4925 -10.2729 -2.1014 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076984933.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:42 Heat of formation + Delta-G solvation = -35.225235 kcal Electronic energy + Delta-G solvation = -19226.890801 eV Core-core repulsion = 15835.560119 eV Total energy + Delta-G solvation = -3391.330682 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.20058 -39.62704 -38.41686 -36.52646 -35.93463 -33.81989 -31.22181 -30.87033 -30.50550 -25.65046 -23.95912 -23.01022 -22.75853 -20.85626 -19.12598 -17.91700 -17.76808 -17.07630 -16.03330 -15.78804 -15.52516 -14.86961 -14.62153 -14.46694 -13.88220 -13.80104 -13.46227 -13.34409 -12.97294 -12.47810 -12.15224 -11.62587 -11.53464 -11.49970 -11.31492 -11.07018 -10.77003 -10.50294 -10.41807 -10.20101 -9.97593 -9.46580 -8.89965 -8.66195 -8.35006 -7.95360 -6.40201 -3.80652 0.79812 0.85916 1.96335 3.14444 3.22005 3.26917 3.31578 3.69138 4.05435 4.14572 4.36444 4.45807 4.56846 4.64886 4.93525 5.04489 5.21202 5.23411 5.36997 5.50319 5.67869 5.69476 5.76858 5.94972 5.96334 6.00709 6.32033 6.49172 6.52450 6.58235 7.56237 8.07515 8.62921 9.18558 9.57153 10.08959 10.77312 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.026780 B = 0.004232 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.303946 B = 6614.709022 C = 7333.806097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.302 4.302 8 H 0.103 0.897 9 N -0.554 5.554 10 C 0.466 3.534 11 O -0.596 6.596 12 C -0.170 4.170 13 H 0.137 0.863 14 C -0.139 4.139 15 C -0.109 4.109 16 H 0.136 0.864 17 C -0.063 4.063 18 C 0.110 3.890 19 F -0.120 7.120 20 C -0.146 4.146 21 C -0.091 4.091 22 C -0.119 4.119 23 C -0.007 4.007 24 Cl -0.050 7.050 25 H 0.272 0.728 26 H 0.394 0.606 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.108 -19.456 -2.826 19.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.188 5.188 10 C 0.252 3.748 11 O -0.482 6.482 12 C -0.191 4.191 13 H 0.154 0.846 14 C -0.177 4.177 15 C -0.127 4.127 16 H 0.154 0.846 17 C -0.065 4.065 18 C 0.090 3.910 19 F -0.099 7.099 20 C -0.165 4.165 21 C -0.109 4.109 22 C -0.138 4.138 23 C -0.034 4.034 24 Cl -0.021 7.021 25 H 0.082 0.918 26 H 0.228 0.772 27 H 0.114 0.886 28 H 0.123 0.877 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.324 -19.205 -2.771 19.449 hybrid contribution -0.253 1.063 0.032 1.093 sum -1.577 -18.142 -2.739 18.415 Atomic orbital electron populations 1.69615 1.05952 1.28310 1.50119 1.25277 0.95632 0.99733 0.97179 0.85909 0.78772 0.80391 0.79097 1.19864 1.20926 1.19868 1.19694 0.93381 0.82241 1.47805 0.87933 1.41787 1.09318 1.04361 1.63342 1.18959 0.87504 0.83946 0.84353 1.90501 1.13844 1.87155 1.56723 1.22917 1.02198 0.90921 1.03051 0.84583 1.22963 1.01702 1.01740 0.91304 1.21049 1.00492 0.91105 1.00075 0.84585 1.19187 0.91496 0.95834 0.99984 1.17374 0.87403 0.86609 0.99591 1.91388 1.71812 1.56533 1.90135 1.21246 1.01682 0.93529 1.00055 1.20897 0.92501 0.98249 0.99278 1.21088 0.96149 0.97668 0.98851 1.20486 0.86442 0.95658 1.00839 1.98391 1.14084 1.98197 1.91408 0.91763 0.77225 0.88550 0.87720 0.84069 0.84160 0.84291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.90 13.05 55.50 0.72 -24.18 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.64 9.68 -14.93 -0.14 -8.79 16 8 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 9 N -0.55 -14.71 5.29 -10.96 -0.06 -14.76 16 10 C 0.47 11.68 7.57 -10.99 -0.08 11.60 16 11 O -0.60 -16.87 15.83 5.55 0.09 -16.78 16 12 C -0.17 -3.32 5.32 -91.77 -0.49 -3.80 16 13 H 0.14 2.51 5.16 -51.93 -0.27 2.24 16 14 C -0.14 -2.31 9.50 -26.70 -0.25 -2.57 16 15 C -0.11 -1.88 5.20 -91.74 -0.48 -2.36 16 16 H 0.14 2.59 6.43 -51.93 -0.33 2.26 16 17 C -0.06 -0.92 5.65 -104.52 -0.59 -1.51 16 18 C 0.11 1.45 7.04 -39.42 -0.28 1.17 16 19 F -0.12 -1.75 12.90 2.25 0.03 -1.72 16 20 C -0.15 -1.46 10.03 -39.51 -0.40 -1.85 16 21 C -0.09 -0.76 10.04 -39.60 -0.40 -1.16 16 22 C -0.12 -1.14 9.83 -39.54 -0.39 -1.53 16 23 C -0.01 -0.09 6.31 -39.51 -0.25 -0.34 16 24 Cl -0.05 -0.64 27.30 -51.86 -1.42 -2.06 16 25 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.39 10.07 7.90 -40.82 -0.32 9.75 16 27 H 0.10 1.37 7.85 -51.93 -0.41 0.97 16 28 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 29 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 292.02 15.07 4.40 4.40 Total: -1.00 -31.71 292.02 -7.63 -39.34 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -2.53 Total: 10.00 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -3.84 Total: -10.57 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.67 Total: -38.94 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.09 Total: -16.78 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.03 Total: -1.72 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.42 Total: -2.06 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.71 -7.63 -39.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076984933.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.116 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds