Wall clock time and date at job start Tue Mar 31 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 120.00096 * 2 1 4 4 H 1.48500 * 109.47279 * 239.99835 * 3 2 1 5 5 H 1.48495 * 109.47372 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47219 * 120.00263 * 3 2 1 7 7 C 1.38956 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00215 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99889 * 179.97438 * 9 7 2 11 11 O 1.21283 * 119.99938 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99731 * 180.02562 * 10 9 7 13 13 H 1.08998 * 115.56342 * 34.30738 * 12 10 9 14 14 C 1.53000 * 117.49886 * 248.62248 * 12 10 9 15 15 C 1.53000 * 117.49842 * 179.97438 * 12 10 9 16 16 H 1.09002 * 117.49614 * 359.97438 * 15 12 10 17 17 C 1.50701 * 117.52066 * 214.96780 * 15 12 10 18 18 C 1.38463 * 120.01681 * 342.00466 * 17 15 12 19 19 F 1.35100 * 120.01927 * 359.97438 * 18 17 15 20 20 C 1.38450 * 119.95967 * 179.72068 * 18 17 15 21 21 C 1.38230 * 119.99931 * 0.52698 * 20 18 17 22 22 C 1.38206 * 120.03971 * 359.76478 * 21 20 18 23 23 C 1.38291 * 120.02167 * 162.27383 * 17 15 12 24 24 Cl 1.73601 * 119.99944 * 0.02562 * 23 17 15 25 25 H 0.96998 * 119.99710 * 359.97438 * 1 2 3 26 26 H 0.97006 * 119.99465 * 359.97438 * 9 7 2 27 27 H 1.08994 * 117.50199 * 145.02228 * 14 12 10 28 28 H 1.09002 * 117.49891 * 359.97438 * 14 12 10 29 29 H 1.08002 * 119.99976 * 180.27793 * 20 18 17 30 30 H 1.08000 * 119.97998 * 179.75186 * 21 20 18 31 31 H 1.07994 * 119.98295 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0016 10 6 1.9973 -3.5579 -0.0026 11 8 3.2101 -3.5578 -0.0031 12 6 1.2438 -4.8629 -0.0044 13 1 0.3054 -4.8635 -0.5590 14 6 1.3185 -5.7235 1.2584 15 6 2.0658 -6.1533 -0.0061 16 1 3.1517 -6.0582 -0.0064 17 6 1.5163 -7.3280 -0.7737 18 6 0.1772 -7.3611 -1.1242 19 9 -0.6376 -6.3406 -0.7779 20 6 -0.3252 -8.4382 -1.8344 21 6 0.5075 -9.4848 -2.1836 22 6 1.8428 -9.4546 -1.8284 23 6 2.3479 -8.3761 -1.1235 24 17 4.0253 -8.3392 -0.6778 25 1 -0.4850 0.8401 0.0004 26 1 0.3534 -2.3906 -0.0016 27 1 0.4293 -6.2902 1.5346 28 1 1.9130 -5.3459 2.0904 29 1 -1.3687 -8.4626 -2.1120 30 1 0.1144 -10.3267 -2.7341 31 1 2.4925 -10.2729 -2.1014 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076984933.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:42 Heat of formation + Delta-G solvation = -54.469393 kcal Electronic energy + Delta-G solvation = -19227.725290 eV Core-core repulsion = 15835.560119 eV Total energy + Delta-G solvation = -3392.165171 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.21575 -40.86757 -39.95971 -37.50313 -37.43261 -35.92161 -33.30622 -31.86099 -31.36902 -27.64252 -25.11038 -24.44221 -23.87384 -22.00040 -20.96200 -19.93607 -18.74557 -18.48196 -17.21909 -16.89175 -16.79635 -16.50801 -15.90961 -15.74757 -15.64364 -15.20977 -15.02236 -14.52770 -14.38683 -13.58049 -13.57023 -13.11168 -12.97393 -12.95744 -12.50302 -12.47001 -12.34973 -12.15593 -11.86263 -11.64055 -11.61677 -11.37918 -10.42438 -10.08428 -9.75411 -9.64856 -8.50899 -6.01053 -0.05368 -0.00847 1.04288 1.35848 1.39275 1.51222 1.83420 2.25919 2.35374 2.88567 2.95438 3.15914 3.25927 3.52954 3.61571 3.85783 3.93401 4.02963 4.23223 4.29351 4.44964 4.50645 4.63645 4.83638 4.90761 5.02299 5.12489 5.20441 5.23078 5.35986 5.72052 5.93900 6.52395 7.05107 7.48400 8.03352 8.66389 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.026780 B = 0.004232 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.303946 B = 6614.709022 C = 7333.806097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.997 3.003 4 H -0.271 1.271 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.342 4.342 8 H 0.080 0.920 9 N -0.562 5.562 10 C 0.462 3.538 11 O -0.636 6.636 12 C -0.188 4.188 13 H 0.149 0.851 14 C -0.122 4.122 15 C -0.095 4.095 16 H 0.112 0.888 17 C -0.092 4.092 18 C 0.089 3.911 19 F -0.134 7.134 20 C -0.138 4.138 21 C -0.070 4.070 22 C -0.111 4.111 23 C -0.020 4.020 24 Cl -0.064 7.064 25 H 0.280 0.720 26 H 0.397 0.603 27 H 0.125 0.875 28 H 0.095 0.905 29 H 0.169 0.831 30 H 0.186 0.814 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.416 -21.339 -3.771 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.210 4.210 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.191 1.191 6 H -0.195 1.195 7 C -0.471 4.471 8 H 0.098 0.902 9 N -0.197 5.197 10 C 0.250 3.750 11 O -0.525 6.525 12 C -0.208 4.208 13 H 0.166 0.834 14 C -0.160 4.160 15 C -0.114 4.114 16 H 0.130 0.870 17 C -0.093 4.093 18 C 0.070 3.930 19 F -0.112 7.112 20 C -0.157 4.157 21 C -0.088 4.088 22 C -0.129 4.129 23 C -0.047 4.047 24 Cl -0.035 7.035 25 H 0.090 0.910 26 H 0.231 0.769 27 H 0.143 0.857 28 H 0.114 0.886 29 H 0.186 0.814 30 H 0.204 0.796 31 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.659 -21.103 -3.713 21.591 hybrid contribution 0.129 1.518 0.277 1.548 sum -2.530 -19.585 -3.436 20.044 Atomic orbital electron populations 1.69680 1.06965 1.29625 1.49495 1.26124 0.96585 1.02555 0.95781 0.84937 0.77778 0.76233 0.79056 1.19597 1.19100 1.19543 1.19703 0.92789 0.83934 1.50659 0.90216 1.41862 1.09348 1.04564 1.63912 1.19878 0.87362 0.85356 0.82371 1.90456 1.15841 1.88074 1.58137 1.22763 1.02745 0.89037 1.06280 0.83388 1.23046 1.02498 1.00175 0.90273 1.20929 0.99092 0.90921 1.00463 0.86966 1.19047 0.92678 0.95635 1.01962 1.17672 0.86869 0.87501 1.00998 1.91330 1.71978 1.57426 1.90503 1.21634 1.03293 0.92392 0.98348 1.21454 0.91419 0.98517 0.97385 1.21500 0.97269 0.97044 0.97122 1.20701 0.85722 0.96445 1.01859 1.98386 1.15156 1.98253 1.91659 0.91046 0.76937 0.85673 0.88611 0.81365 0.79631 0.81491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.02 13.05 21.67 0.28 -50.74 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 3 Si 1.00 43.90 29.55 68.60 2.03 45.93 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.34 -20.34 9.68 84.04 0.81 -19.52 16 8 H 0.08 5.01 7.16 -2.91 -0.02 4.99 16 9 N -0.56 -31.19 5.29 -306.99 -1.62 -32.82 16 10 C 0.46 24.32 7.57 87.66 0.66 24.98 16 11 O -0.64 -38.06 15.83 -3.04 -0.05 -38.11 16 12 C -0.19 -7.56 5.32 -11.54 -0.06 -7.63 16 13 H 0.15 5.60 5.16 -2.39 -0.01 5.59 16 14 C -0.12 -4.12 9.50 30.61 0.29 -3.82 16 15 C -0.10 -3.38 5.20 -11.52 -0.06 -3.44 16 16 H 0.11 4.51 6.43 -2.39 -0.02 4.49 16 17 C -0.09 -2.59 5.65 -19.80 -0.11 -2.70 16 18 C 0.09 2.20 7.04 22.37 0.16 2.36 16 19 F -0.13 -3.77 12.90 44.97 0.58 -3.19 16 20 C -0.14 -2.22 10.03 22.32 0.22 -2.00 16 21 C -0.07 -0.81 10.04 22.26 0.22 -0.59 16 22 C -0.11 -1.72 9.83 22.30 0.22 -1.50 16 23 C -0.02 -0.49 6.31 22.32 0.14 -0.35 16 24 Cl -0.06 -1.63 27.30 -2.72 -0.07 -1.70 16 25 H 0.28 14.48 8.31 -92.71 -0.77 13.70 16 26 H 0.40 21.08 7.90 -92.70 -0.73 20.35 16 27 H 0.13 3.45 7.85 -2.39 -0.02 3.43 16 28 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 29 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 30 H 0.19 0.57 8.06 -2.91 -0.02 0.54 16 31 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -71.97 292.02 4.57 -67.40 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.46 Total: 27.51 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 2.97 Total: -14.30 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -1.34 Total: -83.55 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -0.05 Total: -38.11 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.58 Total: -3.19 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.07 Total: -1.70 kcal Total: -71.97 4.57 -67.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076984933.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.930 kcal (2) G-P(sol) polarization free energy of solvation -71.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds