Wall clock time and date at job start Tue Mar 31 2020 05:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86798 * 119.99710 * 2 1 4 4 H 1.48491 * 109.47274 * 269.99805 * 3 2 1 5 5 H 1.48508 * 109.47203 * 29.99898 * 3 2 1 6 6 H 1.48504 * 109.47191 * 149.99806 * 3 2 1 7 7 C 1.38948 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99797 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00029 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00147 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00096 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00107 * 180.02562 * 10 9 7 13 13 H 1.09000 * 115.55187 * 34.28206 * 12 10 9 14 14 C 1.53007 * 117.49825 * 248.60804 * 12 10 9 15 15 C 1.52998 * 60.03069 * 252.50155 * 14 12 10 16 16 H 1.09011 * 117.49632 * 252.52104 * 15 14 12 17 17 C 1.50695 * 117.50010 * 107.50917 * 15 14 12 18 18 C 1.38459 * 120.02120 * 33.29632 * 17 15 14 19 19 F 1.35104 * 120.01897 * 0.02562 * 18 17 15 20 20 C 1.38450 * 119.96404 * 179.97438 * 18 17 15 21 21 C 1.38224 * 119.99776 * 0.02562 * 20 18 17 22 22 C 1.38201 * 120.04039 * 359.97438 * 21 20 18 23 23 C 1.38289 * 120.01699 * 213.03190 * 17 15 14 24 24 Cl 1.73595 * 120.00477 * 359.97438 * 23 17 15 25 25 H 0.97000 * 120.00229 * 359.97438 * 1 2 3 26 26 H 0.97009 * 120.00031 * 0.02562 * 9 7 2 27 27 H 1.09000 * 117.49745 * 0.02562 * 14 12 10 28 28 H 1.09001 * 117.49591 * 144.99490 * 14 12 10 29 29 H 1.08000 * 119.99928 * 180.02562 * 20 18 17 30 30 H 1.08005 * 119.98059 * 180.02562 * 21 20 18 31 31 H 1.08005 * 119.97917 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5578 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 1 0.3050 -4.8634 -0.5557 14 6 1.3200 -5.7231 1.2609 15 6 2.0662 -6.1540 -0.0033 16 1 1.6679 -7.0038 -0.5578 17 6 3.5675 -6.0234 -0.0037 18 6 4.2795 -6.2107 1.1689 19 9 3.6287 -6.5110 2.3142 20 6 5.6588 -6.0909 1.1671 21 6 6.3242 -5.7841 -0.0050 22 6 5.6136 -5.5972 -1.1755 23 6 4.2353 -5.7219 -1.1765 24 17 3.3444 -5.4944 -2.6489 25 1 -0.4850 0.8400 0.0004 26 1 0.3535 -2.3907 -0.0005 27 1 1.9146 -5.3447 2.0924 28 1 0.4309 -6.2894 1.5384 29 1 6.2148 -6.2372 2.0813 30 1 7.4003 -5.6912 -0.0062 31 1 6.1346 -5.3571 -2.0906 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076984935.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:46 Heat of formation + Delta-G solvation = -33.691955 kcal Electronic energy + Delta-G solvation = -19993.911952 eV Core-core repulsion = 16602.647758 eV Total energy + Delta-G solvation = -3391.264194 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.63922 -39.48844 -38.03740 -36.00892 -35.81029 -33.75391 -31.22345 -30.39574 -30.01719 -25.63439 -23.65379 -22.98846 -22.22792 -20.75661 -18.83744 -17.78026 -17.35211 -16.68495 -16.06681 -15.35474 -15.25567 -14.64973 -14.46825 -14.31218 -13.83988 -13.47524 -13.24067 -13.02142 -12.61663 -12.38645 -11.75475 -11.63094 -11.47044 -11.10109 -10.99171 -10.90273 -10.56343 -10.39395 -10.23286 -10.09407 -9.99284 -9.45955 -8.71998 -8.32833 -7.93071 -7.86981 -6.39367 -3.78891 1.38663 1.44468 2.49603 3.17082 3.26985 3.32747 3.59923 3.79437 4.16192 4.30752 4.58018 4.72135 4.92445 5.05012 5.12837 5.34719 5.38427 5.44838 5.51794 5.68624 5.81911 5.97779 6.05755 6.21260 6.28683 6.41111 6.45585 6.49123 6.51656 7.05768 7.57297 8.08838 8.64448 9.20374 9.59045 10.10632 10.78493 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.018615 B = 0.005874 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.832263 B = 4765.713841 C = 4889.247891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.928 3.072 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.295 4.295 8 H 0.102 0.898 9 N -0.557 5.557 10 C 0.468 3.532 11 O -0.578 6.578 12 C -0.151 4.151 13 H 0.114 0.886 14 C -0.151 4.151 15 C -0.103 4.103 16 H 0.120 0.880 17 C -0.032 4.032 18 C 0.112 3.888 19 F -0.136 7.136 20 C -0.153 4.153 21 C -0.092 4.092 22 C -0.120 4.120 23 C 0.032 3.968 24 Cl -0.063 7.063 25 H 0.271 0.729 26 H 0.392 0.608 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.866 -13.204 -0.691 14.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.755 3.245 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.424 4.424 8 H 0.120 0.880 9 N -0.192 5.192 10 C 0.254 3.746 11 O -0.463 6.463 12 C -0.172 4.172 13 H 0.132 0.868 14 C -0.188 4.188 15 C -0.122 4.122 16 H 0.138 0.862 17 C -0.034 4.034 18 C 0.093 3.907 19 F -0.114 7.114 20 C -0.172 4.172 21 C -0.110 4.110 22 C -0.139 4.139 23 C 0.005 3.995 24 Cl -0.033 7.033 25 H 0.081 0.919 26 H 0.225 0.775 27 H 0.124 0.876 28 H 0.118 0.882 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.430 -12.995 -0.778 14.520 hybrid contribution -0.545 1.050 0.033 1.184 sum 5.885 -11.945 -0.746 13.337 Atomic orbital electron populations 1.69619 1.05914 1.28079 1.50636 1.25249 0.95606 0.99661 0.97453 0.85888 0.79244 0.80983 0.78360 1.20441 1.20941 1.19467 1.19682 0.93287 0.82192 1.47266 0.87970 1.41796 1.09186 1.04417 1.63786 1.18883 0.87696 0.83747 0.84271 1.90549 1.13282 1.86509 1.55927 1.22361 1.00732 0.91496 1.02639 0.86836 1.23166 1.02028 1.01821 0.91810 1.20782 0.89224 0.98627 1.03546 0.86224 1.18598 0.94042 0.99661 0.91083 1.17152 0.90012 1.02271 0.81287 1.91436 1.81542 1.90656 1.47790 1.21007 0.92343 1.04070 0.99766 1.20713 0.99766 0.99161 0.91357 1.20914 0.91938 1.01778 0.99307 1.20178 0.91574 1.00298 0.87422 1.98348 1.75995 1.95295 1.33711 0.91918 0.77472 0.87633 0.88153 0.85012 0.84945 0.85120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.32 29.55 -169.99 -5.02 16.29 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.29 -8.25 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.29 5.29 -10.97 -0.06 -14.35 16 10 C 0.47 11.00 7.54 -10.99 -0.08 10.91 16 11 O -0.58 -14.75 12.56 5.54 0.07 -14.68 16 12 C -0.15 -2.76 6.18 -91.73 -0.57 -3.33 16 13 H 0.11 1.86 8.14 -51.93 -0.42 1.43 16 14 C -0.15 -2.42 8.92 -26.73 -0.24 -2.66 16 15 C -0.10 -1.68 4.91 -91.74 -0.45 -2.14 16 16 H 0.12 1.65 8.14 -51.92 -0.42 1.23 16 17 C -0.03 -0.56 3.41 -104.52 -0.36 -0.92 16 18 C 0.11 1.90 7.07 -39.42 -0.28 1.62 16 19 F -0.14 -2.26 14.36 2.25 0.03 -2.23 16 20 C -0.15 -2.24 10.03 -39.51 -0.40 -2.63 16 21 C -0.09 -1.25 10.04 -39.60 -0.40 -1.65 16 22 C -0.12 -1.83 9.83 -39.54 -0.39 -2.21 16 23 C 0.03 0.55 4.78 -39.51 -0.19 0.36 16 24 Cl -0.06 -1.05 27.98 -51.86 -1.45 -2.50 16 25 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.39 9.78 7.90 -40.82 -0.32 9.46 16 27 H 0.11 1.90 6.38 -51.93 -0.33 1.57 16 28 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 30 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 31 H 0.13 1.70 8.06 -52.48 -0.42 1.27 16 LS Contribution 290.34 15.07 4.38 4.38 Total: -1.00 -30.54 290.34 -7.62 -38.16 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -2.70 Total: 9.57 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -3.59 Total: -10.53 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.67 Total: -38.46 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.07 Total: -14.68 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.03 Total: -2.23 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.45 Total: -2.50 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.54 -7.62 -38.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076984935.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.466 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds