Wall clock time and date at job start Tue Mar 31 2020 05:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86798 * 119.99710 * 2 1 4 4 H 1.48491 * 109.47274 * 269.99805 * 3 2 1 5 5 H 1.48508 * 109.47203 * 29.99898 * 3 2 1 6 6 H 1.48504 * 109.47191 * 149.99806 * 3 2 1 7 7 C 1.38948 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99797 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00029 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00147 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00096 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00107 * 180.02562 * 10 9 7 13 13 H 1.09000 * 115.55187 * 34.28206 * 12 10 9 14 14 C 1.53007 * 117.49825 * 248.60804 * 12 10 9 15 15 C 1.52998 * 60.03069 * 252.50155 * 14 12 10 16 16 H 1.09011 * 117.49632 * 252.52104 * 15 14 12 17 17 C 1.50695 * 117.50010 * 107.50917 * 15 14 12 18 18 C 1.38459 * 120.02120 * 33.29632 * 17 15 14 19 19 F 1.35104 * 120.01897 * 0.02562 * 18 17 15 20 20 C 1.38450 * 119.96404 * 179.97438 * 18 17 15 21 21 C 1.38224 * 119.99776 * 0.02562 * 20 18 17 22 22 C 1.38201 * 120.04039 * 359.97438 * 21 20 18 23 23 C 1.38289 * 120.01699 * 213.03190 * 17 15 14 24 24 Cl 1.73595 * 120.00477 * 359.97438 * 23 17 15 25 25 H 0.97000 * 120.00229 * 359.97438 * 1 2 3 26 26 H 0.97009 * 120.00031 * 0.02562 * 9 7 2 27 27 H 1.09000 * 117.49745 * 0.02562 * 14 12 10 28 28 H 1.09001 * 117.49591 * 144.99490 * 14 12 10 29 29 H 1.08000 * 119.99928 * 180.02562 * 20 18 17 30 30 H 1.08005 * 119.98059 * 180.02562 * 21 20 18 31 31 H 1.08005 * 119.97917 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4454 2.6527 0.7000 6 1 3.5457 1.4403 0.7001 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5578 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 1 0.3050 -4.8634 -0.5557 14 6 1.3200 -5.7231 1.2609 15 6 2.0662 -6.1540 -0.0033 16 1 1.6679 -7.0038 -0.5578 17 6 3.5675 -6.0234 -0.0037 18 6 4.2795 -6.2107 1.1689 19 9 3.6287 -6.5110 2.3142 20 6 5.6588 -6.0909 1.1671 21 6 6.3242 -5.7841 -0.0050 22 6 5.6136 -5.5972 -1.1755 23 6 4.2353 -5.7219 -1.1765 24 17 3.3444 -5.4944 -2.6489 25 1 -0.4850 0.8400 0.0004 26 1 0.3535 -2.3907 -0.0005 27 1 1.9146 -5.3447 2.0924 28 1 0.4309 -6.2894 1.5384 29 1 6.2148 -6.2372 2.0813 30 1 7.4003 -5.6912 -0.0062 31 1 6.1346 -5.3571 -2.0906 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076984935.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:45 Heat of formation + Delta-G solvation = -51.202855 kcal Electronic energy + Delta-G solvation = -19994.671281 eV Core-core repulsion = 16602.647758 eV Total energy + Delta-G solvation = -3392.023524 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.89334 -40.92899 -39.53074 -37.33965 -37.25970 -35.72325 -33.20012 -31.65038 -31.20198 -27.55119 -24.99716 -24.44362 -23.54985 -22.04252 -20.59445 -19.69346 -18.65686 -18.13774 -17.33495 -16.84383 -16.60989 -16.25881 -16.01389 -15.66425 -15.54291 -15.00151 -14.82972 -14.38260 -13.99374 -13.76350 -13.48624 -13.05603 -12.93853 -12.84068 -12.39683 -12.22325 -12.15310 -12.11910 -11.82813 -11.54630 -11.34183 -11.32121 -10.34538 -9.95822 -9.52924 -9.33546 -8.43932 -5.90820 0.18237 0.25167 1.24367 1.36279 1.39800 1.52349 1.96608 2.29378 2.56985 2.80061 3.15177 3.31174 3.39442 3.61535 3.92078 3.93188 4.04970 4.16187 4.33826 4.39084 4.53462 4.65268 4.82186 4.88336 5.05447 5.09357 5.20413 5.26469 5.33365 5.43343 5.90213 6.03504 6.63564 7.16185 7.62529 8.17791 8.74078 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.018615 B = 0.005874 C = 0.005725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.832263 B = 4765.713841 C = 4889.247891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.016 4.016 3 Si 0.989 3.011 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.322 4.322 8 H 0.080 0.920 9 N -0.574 5.574 10 C 0.470 3.530 11 O -0.599 6.599 12 C -0.169 4.169 13 H 0.134 0.866 14 C -0.135 4.135 15 C -0.093 4.093 16 H 0.147 0.853 17 C -0.057 4.057 18 C 0.089 3.911 19 F -0.140 7.140 20 C -0.156 4.156 21 C -0.085 4.085 22 C -0.131 4.131 23 C 0.010 3.990 24 Cl -0.069 7.069 25 H 0.275 0.725 26 H 0.392 0.608 27 H 0.084 0.916 28 H 0.138 0.862 29 H 0.158 0.842 30 H 0.172 0.828 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.596 -13.790 -0.516 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.215 4.215 3 Si 0.813 3.187 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.452 4.452 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.258 3.742 11 O -0.485 6.485 12 C -0.190 4.190 13 H 0.152 0.848 14 C -0.173 4.173 15 C -0.112 4.112 16 H 0.165 0.835 17 C -0.059 4.059 18 C 0.070 3.930 19 F -0.118 7.118 20 C -0.175 4.175 21 C -0.103 4.103 22 C -0.149 4.149 23 C -0.017 4.017 24 Cl -0.040 7.040 25 H 0.085 0.915 26 H 0.226 0.774 27 H 0.102 0.898 28 H 0.156 0.844 29 H 0.176 0.824 30 H 0.189 0.811 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.157 -13.604 -0.603 15.384 hybrid contribution -0.675 1.137 -0.009 1.322 sum 6.482 -12.467 -0.612 14.065 Atomic orbital electron populations 1.69688 1.06848 1.29036 1.50995 1.26002 0.96485 1.02325 0.96738 0.84980 0.77931 0.77206 0.78555 1.19768 1.19718 1.19720 1.19618 0.92560 0.83878 1.49121 0.90237 1.41886 1.09128 1.04650 1.65368 1.19734 0.87780 0.84828 0.81867 1.90522 1.14596 1.87306 1.56044 1.22247 1.01646 0.89610 1.05496 0.84827 1.23244 1.02992 1.00590 0.90444 1.20989 0.88856 0.97812 1.03498 0.83549 1.18834 0.94785 1.00734 0.91565 1.17486 0.91116 1.03298 0.81146 1.91418 1.81766 1.90800 1.47842 1.21430 0.91731 1.02985 1.01321 1.21196 1.01648 0.97173 0.90236 1.21311 0.91519 1.01282 1.00828 1.20447 0.92519 1.01409 0.87312 1.98335 1.76277 1.95422 1.33981 0.91517 0.77430 0.89778 0.84368 0.82427 0.81057 0.83350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.12 13.05 21.66 0.28 -50.83 16 2 C -0.02 -0.89 5.50 84.92 0.47 -0.43 16 3 Si 0.99 43.75 29.55 68.60 2.03 45.78 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.32 -18.44 9.68 84.04 0.81 -17.62 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.57 -30.06 5.29 -306.99 -1.62 -31.68 16 10 C 0.47 22.30 7.54 87.66 0.66 22.96 16 11 O -0.60 -30.99 12.56 -3.08 -0.04 -31.03 16 12 C -0.17 -6.03 6.18 -11.51 -0.07 -6.11 16 13 H 0.13 4.19 8.14 -2.39 -0.02 4.17 16 14 C -0.14 -4.13 8.92 30.60 0.27 -3.86 16 15 C -0.09 -2.91 4.91 -11.52 -0.06 -2.97 16 16 H 0.15 3.69 8.14 -2.38 -0.02 3.68 16 17 C -0.06 -1.97 3.41 -19.80 -0.07 -2.04 16 18 C 0.09 2.92 7.07 22.37 0.16 3.08 16 19 F -0.14 -4.55 14.36 44.97 0.65 -3.90 16 20 C -0.16 -4.27 10.03 22.32 0.22 -4.04 16 21 C -0.08 -2.10 10.04 22.26 0.22 -1.87 16 22 C -0.13 -3.77 9.83 22.30 0.22 -3.55 16 23 C 0.01 0.34 4.78 22.32 0.11 0.44 16 24 Cl -0.07 -2.29 27.98 -2.72 -0.08 -2.36 16 25 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 26 H 0.39 20.00 7.90 -92.70 -0.73 19.27 16 27 H 0.08 2.97 6.38 -2.39 -0.02 2.96 16 28 H 0.14 3.14 8.14 -2.39 -0.02 3.12 16 29 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 30 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 31 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -66.49 290.34 4.62 -61.87 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.45 Total: 28.16 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 2.95 Total: -15.99 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -1.34 Total: -82.52 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.04 Total: -31.03 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.65 Total: -3.90 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 17 Polarization: -2.29 SS G_CDS: -0.08 Total: -2.36 kcal Total: -66.49 4.62 -61.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076984935.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.663 kcal (2) G-P(sol) polarization free energy of solvation -66.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds