Wall clock time and date at job start Tue Mar 31 2020 05:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86802 * 119.99888 * 2 1 4 4 H 1.48503 * 109.47176 * 270.00494 * 3 2 1 5 5 H 1.48502 * 109.47385 * 30.00114 * 3 2 1 6 6 H 1.48495 * 109.47228 * 150.00147 * 3 2 1 7 7 C 1.39034 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99919 * 160.12474 * 7 2 1 9 9 N 1.36879 * 120.00451 * 340.12871 * 7 2 1 10 10 C 1.34780 * 119.99510 * 317.99554 * 9 7 2 11 11 O 1.21594 * 120.00046 * 3.59416 * 10 9 7 12 12 C 1.47665 * 119.99855 * 183.58712 * 10 9 7 13 13 C 1.39703 * 120.14981 * 314.40750 * 12 10 9 14 14 C 1.37876 * 119.90689 * 180.02562 * 13 12 10 15 15 C 1.38412 * 120.21431 * 0.02562 * 14 13 12 16 16 C 1.38483 * 120.30334 * 359.97438 * 15 14 13 17 17 F 1.35098 * 119.95705 * 179.97438 * 16 15 14 18 18 C 1.38359 * 120.08875 * 0.26654 * 16 15 14 19 19 Cl 1.73602 * 120.10687 * 179.70307 * 18 16 15 20 20 C 1.46501 * 120.00606 * 137.99201 * 9 7 2 21 21 C 1.53004 * 117.49331 * 3.68363 * 20 9 7 22 22 C 1.52994 * 117.49882 * 295.02802 * 20 9 7 23 23 H 0.97001 * 120.00193 * 5.05227 * 1 2 3 24 24 H 1.07998 * 120.04771 * 0.02562 * 13 12 10 25 25 H 1.07998 * 119.89421 * 179.97438 * 14 13 12 26 26 H 1.08002 * 119.84735 * 179.97438 * 15 14 13 27 27 H 1.08996 * 115.54933 * 149.34636 * 20 9 7 28 28 H 1.08992 * 117.50224 * 359.97438 * 21 20 9 29 29 H 1.08998 * 117.49418 * 145.02160 * 21 20 9 30 30 H 1.09010 * 117.49443 * 214.97853 * 22 20 9 31 31 H 1.09000 * 117.50306 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.4950 2.0465 -1.4001 5 1 1.4451 2.6527 0.7001 6 1 3.5452 1.4403 0.7000 7 6 2.0089 -1.2040 0.0005 8 1 3.0406 -1.2320 -0.3174 9 7 1.3857 -2.3541 0.4040 10 6 0.5800 -2.3405 1.4844 11 8 0.3548 -1.2943 2.0617 12 6 -0.0293 -3.5961 1.9668 13 6 -0.6192 -4.4825 1.0624 14 6 -1.1872 -5.6532 1.5183 15 6 -1.1753 -5.9530 2.8695 16 6 -0.5930 -5.0806 3.7738 17 9 -0.5858 -5.3800 5.0911 18 6 -0.0238 -3.9000 3.3305 19 17 0.6996 -2.8025 4.4645 20 6 1.5944 -3.5996 -0.3385 21 6 2.5866 -3.5701 -1.5029 22 6 1.0836 -3.6571 -1.7795 23 1 -0.4850 0.8368 -0.0740 24 1 -0.6304 -4.2511 0.0075 25 1 -1.6435 -6.3381 0.8190 26 1 -1.6223 -6.8715 3.2203 27 1 1.5386 -4.5140 0.2521 28 1 3.0836 -2.6240 -1.7167 29 1 3.1831 -4.4653 -1.6785 30 1 0.6919 -4.6095 -2.1371 31 1 0.5919 -2.7683 -2.1751 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079732599.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:57 Heat of formation + Delta-G solvation = -7.867489 kcal Electronic energy + Delta-G solvation = -20215.712853 eV Core-core repulsion = 16825.568492 eV Total energy + Delta-G solvation = -3390.144361 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.75738 -39.50372 -37.70701 -36.13735 -35.86388 -32.87858 -31.39500 -30.40722 -30.11456 -25.44440 -23.38975 -22.47709 -21.76803 -21.12566 -19.75565 -17.80210 -16.35766 -16.27586 -16.15048 -15.65099 -15.53654 -15.03089 -14.30809 -14.01751 -13.72411 -13.48817 -12.98856 -12.81887 -12.39937 -12.12577 -11.85993 -11.45379 -11.17705 -11.06711 -11.03607 -10.85975 -10.44959 -10.36792 -10.32829 -9.97016 -9.79406 -8.83356 -8.63463 -8.42698 -8.14080 -7.08739 -6.20851 -3.92434 1.13489 1.23471 2.49901 3.25175 3.36627 3.38405 3.51287 4.08060 4.18440 4.37132 4.67100 4.73346 4.90706 5.14755 5.19560 5.33724 5.41674 5.55028 5.71304 5.76163 5.87106 6.03430 6.11743 6.22060 6.32785 6.45336 6.51667 6.77380 6.90318 6.91427 7.53070 8.15802 8.91306 9.04804 9.53060 10.16737 10.86408 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.007421 C = 0.005896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.683369 B = 3772.222068 C = 4747.880264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.072 3.928 3 Si 0.913 3.087 4 H -0.282 1.282 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.345 4.345 8 H 0.085 0.915 9 N -0.409 5.409 10 C 0.501 3.499 11 O -0.502 6.502 12 C -0.055 4.055 13 C -0.101 4.101 14 C -0.097 4.097 15 C -0.150 4.150 16 C 0.096 3.904 17 F -0.133 7.133 18 C -0.046 4.046 19 Cl -0.034 7.034 20 C 0.064 3.936 21 C -0.179 4.179 22 C -0.198 4.198 23 H 0.266 0.734 24 H 0.146 0.854 25 H 0.136 0.864 26 H 0.139 0.861 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.884 -11.753 0.488 11.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.140 4.140 3 Si 0.739 3.261 4 H -0.208 1.208 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.472 4.472 8 H 0.102 0.898 9 N -0.129 5.129 10 C 0.288 3.712 11 O -0.378 6.378 12 C -0.060 4.060 13 C -0.120 4.120 14 C -0.115 4.115 15 C -0.169 4.169 16 C 0.076 3.924 17 F -0.112 7.112 18 C -0.075 4.075 19 Cl -0.004 7.004 20 C -0.042 4.042 21 C -0.217 4.217 22 C -0.236 4.236 23 H 0.077 0.923 24 H 0.164 0.836 25 H 0.154 0.846 26 H 0.157 0.843 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.098 -10.944 1.033 11.047 hybrid contribution 0.286 0.715 0.201 0.796 sum -0.811 -10.229 1.234 10.335 Atomic orbital electron populations 1.69826 1.06670 1.27792 1.40455 1.25251 0.94803 0.99458 0.94500 0.86198 0.79946 0.82221 0.77702 1.20801 1.20843 1.19452 1.18980 0.95547 0.84026 1.48634 0.89770 1.42639 1.42729 1.06183 1.21358 1.17430 0.84845 0.86603 0.82307 1.90694 1.59905 1.30676 1.56537 1.20469 0.97643 0.97191 0.90711 1.21668 0.96640 0.92943 1.00750 1.20997 0.98798 0.97182 0.94528 1.21055 1.02561 1.00078 0.93205 1.17275 1.02295 0.94371 0.78450 1.91499 1.94770 1.93069 1.31832 1.20985 1.02637 0.92252 0.91653 1.98391 1.80977 1.62069 1.58994 1.21900 1.04159 0.90574 0.87570 1.23127 0.92494 1.02962 1.03100 1.23305 0.97031 1.02321 1.00987 0.92336 0.83640 0.84571 0.84348 0.87523 0.87581 0.89773 0.89876 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.36 11.52 55.50 0.64 -22.72 16 2 C 0.07 1.97 4.33 -17.46 -0.08 1.89 16 3 Si 0.91 21.43 29.60 -169.99 -5.03 16.40 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.35 -9.08 8.20 -15.00 -0.12 -9.20 16 8 H 0.08 2.13 6.86 -52.49 -0.36 1.77 16 9 N -0.41 -9.93 2.85 -108.86 -0.31 -10.24 16 10 C 0.50 12.63 6.24 -12.41 -0.08 12.55 16 11 O -0.50 -14.59 13.01 5.28 0.07 -14.52 16 12 C -0.06 -1.14 5.11 -104.95 -0.54 -1.68 16 13 C -0.10 -1.68 7.63 -39.17 -0.30 -1.97 16 14 C -0.10 -1.25 10.03 -39.65 -0.40 -1.65 16 15 C -0.15 -1.98 10.02 -39.43 -0.39 -2.37 16 16 C 0.10 1.58 7.27 -39.45 -0.29 1.30 16 17 F -0.13 -2.15 16.83 2.25 0.04 -2.11 16 18 C -0.05 -0.91 6.34 -38.98 -0.25 -1.15 16 19 Cl -0.03 -0.69 26.69 -51.86 -1.38 -2.08 16 20 C 0.06 1.22 4.44 -67.93 -0.30 0.92 16 21 C -0.18 -3.03 9.81 -26.69 -0.26 -3.29 16 22 C -0.20 -3.35 9.50 -26.70 -0.25 -3.60 16 23 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.15 2.38 5.95 -52.49 -0.31 2.07 16 25 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 26 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 27 H 0.11 1.83 6.28 -51.93 -0.33 1.50 16 28 H 0.11 1.97 6.51 -51.93 -0.34 1.64 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 31 H 0.10 2.00 8.14 -51.93 -0.42 1.58 16 LS Contribution 285.20 15.07 4.30 4.30 Total: -1.00 -31.13 285.20 -7.52 -38.65 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -2.59 Total: 0.58 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -3.26 Total: -8.26 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.33 Total: -32.96 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.07 Total: -14.52 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.38 Total: -2.08 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.13 -7.52 -38.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079732599.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.782 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds