Wall clock time and date at job start Tue Mar 31 2020 05:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86802 * 119.99888 * 2 1 4 4 H 1.48503 * 109.47176 * 270.00494 * 3 2 1 5 5 H 1.48502 * 109.47385 * 30.00114 * 3 2 1 6 6 H 1.48495 * 109.47228 * 150.00147 * 3 2 1 7 7 C 1.39034 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99919 * 160.12474 * 7 2 1 9 9 N 1.36879 * 120.00451 * 340.12871 * 7 2 1 10 10 C 1.34780 * 119.99510 * 317.99554 * 9 7 2 11 11 O 1.21594 * 120.00046 * 3.59416 * 10 9 7 12 12 C 1.47665 * 119.99855 * 183.58712 * 10 9 7 13 13 C 1.39703 * 120.14981 * 314.40750 * 12 10 9 14 14 C 1.37876 * 119.90689 * 180.02562 * 13 12 10 15 15 C 1.38412 * 120.21431 * 0.02562 * 14 13 12 16 16 C 1.38483 * 120.30334 * 359.97438 * 15 14 13 17 17 F 1.35098 * 119.95705 * 179.97438 * 16 15 14 18 18 C 1.38359 * 120.08875 * 0.26654 * 16 15 14 19 19 Cl 1.73602 * 120.10687 * 179.70307 * 18 16 15 20 20 C 1.46501 * 120.00606 * 137.99201 * 9 7 2 21 21 C 1.53004 * 117.49331 * 3.68363 * 20 9 7 22 22 C 1.52994 * 117.49882 * 295.02802 * 20 9 7 23 23 H 0.97001 * 120.00193 * 5.05227 * 1 2 3 24 24 H 1.07998 * 120.04771 * 0.02562 * 13 12 10 25 25 H 1.07998 * 119.89421 * 179.97438 * 14 13 12 26 26 H 1.08002 * 119.84735 * 179.97438 * 15 14 13 27 27 H 1.08996 * 115.54933 * 149.34636 * 20 9 7 28 28 H 1.08992 * 117.50224 * 359.97438 * 21 20 9 29 29 H 1.08998 * 117.49418 * 145.02160 * 21 20 9 30 30 H 1.09010 * 117.49443 * 214.97853 * 22 20 9 31 31 H 1.09000 * 117.50306 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.4950 2.0465 -1.4001 5 1 1.4451 2.6527 0.7001 6 1 3.5452 1.4403 0.7000 7 6 2.0089 -1.2040 0.0005 8 1 3.0406 -1.2320 -0.3174 9 7 1.3857 -2.3541 0.4040 10 6 0.5800 -2.3405 1.4844 11 8 0.3548 -1.2943 2.0617 12 6 -0.0293 -3.5961 1.9668 13 6 -0.6192 -4.4825 1.0624 14 6 -1.1872 -5.6532 1.5183 15 6 -1.1753 -5.9530 2.8695 16 6 -0.5930 -5.0806 3.7738 17 9 -0.5858 -5.3800 5.0911 18 6 -0.0238 -3.9000 3.3305 19 17 0.6996 -2.8025 4.4645 20 6 1.5944 -3.5996 -0.3385 21 6 2.5866 -3.5701 -1.5029 22 6 1.0836 -3.6571 -1.7795 23 1 -0.4850 0.8368 -0.0740 24 1 -0.6304 -4.2511 0.0075 25 1 -1.6435 -6.3381 0.8190 26 1 -1.6223 -6.8715 3.2203 27 1 1.5386 -4.5140 0.2521 28 1 3.0836 -2.6240 -1.7167 29 1 3.1831 -4.4653 -1.6785 30 1 0.6919 -4.6095 -2.1371 31 1 0.5919 -2.7683 -2.1751 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079732599.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:57 Heat of formation + Delta-G solvation = -26.509103 kcal Electronic energy + Delta-G solvation = -20216.521214 eV Core-core repulsion = 16825.568492 eV Total energy + Delta-G solvation = -3390.952722 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.01200 -41.04555 -39.17476 -37.73903 -37.39946 -34.76517 -33.10020 -31.87296 -31.44304 -27.28307 -24.88379 -23.77416 -23.16304 -22.61946 -21.41694 -19.33771 -17.97524 -17.65314 -17.52728 -17.13172 -16.96431 -16.69119 -15.96783 -15.41577 -15.22059 -14.99599 -14.59408 -14.29616 -14.01024 -13.66890 -13.23676 -13.04066 -12.77437 -12.73392 -12.60382 -12.44528 -12.22033 -11.98519 -11.91250 -11.55799 -11.21031 -10.74164 -10.15861 -9.85566 -9.71213 -8.96227 -8.22786 -5.96649 -0.15976 -0.02657 1.07046 1.34725 1.43201 1.49443 2.13809 2.31357 2.61362 2.85005 3.09739 3.21219 3.40632 3.68932 3.91812 4.02574 4.15081 4.19197 4.33446 4.43494 4.49788 4.77350 4.93692 4.95380 5.06520 5.16986 5.28892 5.33367 5.45618 5.55825 5.72339 6.17915 6.97464 7.17125 7.63726 8.30798 8.84786 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.019125 B = 0.007421 C = 0.005896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.683369 B = 3772.222068 C = 4747.880264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.026 3.974 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.358 4.358 8 H 0.085 0.915 9 N -0.426 5.426 10 C 0.492 3.508 11 O -0.559 6.559 12 C -0.088 4.088 13 C -0.099 4.099 14 C -0.070 4.070 15 C -0.120 4.120 16 C 0.089 3.911 17 F -0.133 7.133 18 C -0.069 4.069 19 Cl -0.062 7.062 20 C 0.041 3.959 21 C -0.169 4.169 22 C -0.179 4.179 23 H 0.259 0.741 24 H 0.147 0.853 25 H 0.192 0.808 26 H 0.187 0.813 27 H 0.130 0.870 28 H 0.081 0.919 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.464 -15.694 -0.577 15.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.182 4.182 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.485 4.485 8 H 0.103 0.897 9 N -0.145 5.145 10 C 0.281 3.719 11 O -0.439 6.439 12 C -0.093 4.093 13 C -0.118 4.118 14 C -0.087 4.087 15 C -0.139 4.139 16 C 0.069 3.931 17 F -0.112 7.112 18 C -0.098 4.098 19 Cl -0.033 7.033 20 C -0.064 4.064 21 C -0.206 4.206 22 C -0.218 4.218 23 H 0.069 0.931 24 H 0.165 0.835 25 H 0.209 0.791 26 H 0.204 0.796 27 H 0.148 0.852 28 H 0.100 0.900 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.649 -14.924 -0.070 15.015 hybrid contribution 0.432 1.724 0.557 1.863 sum -1.217 -13.200 0.487 13.264 Atomic orbital electron populations 1.69933 1.07976 1.27654 1.43273 1.25978 0.95390 1.02332 0.94508 0.85389 0.78427 0.78745 0.78432 1.18649 1.22208 1.19431 1.19187 0.95781 0.85348 1.48168 0.89693 1.42828 1.42300 1.07334 1.22025 1.18161 0.84194 0.87692 0.81859 1.90634 1.61804 1.33252 1.58174 1.20144 1.00607 0.96651 0.91879 1.21783 0.96310 0.93524 1.00168 1.21539 0.96110 0.95797 0.95276 1.21652 0.99460 1.00218 0.92574 1.17519 1.02540 0.93939 0.79098 1.91502 1.94781 1.92896 1.32020 1.21208 1.04238 0.93291 0.91030 1.98370 1.81684 1.63447 1.59837 1.22159 1.06717 0.89166 0.88353 1.23204 0.92775 1.03576 1.01078 1.23265 0.96941 1.02949 0.98621 0.93136 0.83542 0.79071 0.79594 0.85223 0.90046 0.85721 0.85285 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -51.53 11.52 21.68 0.25 -51.28 16 2 C 0.03 1.47 4.33 84.95 0.37 1.83 16 3 Si 0.96 45.85 29.60 68.60 2.03 47.88 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.36 -19.50 8.20 84.10 0.69 -18.81 16 8 H 0.09 4.45 6.86 -2.91 -0.02 4.43 16 9 N -0.43 -21.14 2.85 -616.58 -1.76 -22.90 16 10 C 0.49 25.68 6.24 86.73 0.54 26.22 16 11 O -0.56 -34.32 13.01 -4.01 -0.05 -34.37 16 12 C -0.09 -3.61 5.11 -20.07 -0.10 -3.71 16 13 C -0.10 -2.98 7.63 22.54 0.17 -2.81 16 14 C -0.07 -1.37 10.03 22.23 0.22 -1.15 16 15 C -0.12 -2.48 10.02 22.37 0.22 -2.25 16 16 C 0.09 2.69 7.27 22.36 0.16 2.85 16 17 F -0.13 -4.02 16.83 44.97 0.76 -3.26 16 18 C -0.07 -2.67 6.34 22.66 0.14 -2.53 16 19 Cl -0.06 -2.67 26.69 -2.72 -0.07 -2.74 16 20 C 0.04 1.50 4.44 44.99 0.20 1.70 16 21 C -0.17 -5.36 9.81 30.62 0.30 -5.06 16 22 C -0.18 -5.69 9.50 30.62 0.29 -5.40 16 23 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 24 H 0.15 4.37 5.95 -2.91 -0.02 4.36 16 25 H 0.19 1.83 8.06 -2.91 -0.02 1.80 16 26 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 27 H 0.13 4.10 6.28 -2.39 -0.01 4.09 16 28 H 0.08 3.01 6.51 -2.39 -0.02 2.99 16 29 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 30 H 0.13 2.90 8.14 -2.38 -0.02 2.88 16 31 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -75.16 285.20 5.55 -69.61 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 1.18 Total: 6.19 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 3.21 Total: -9.13 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -1.51 Total: -74.17 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.05 Total: -34.37 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.76 Total: -3.26 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Atomic # 17 Polarization: -2.67 SS G_CDS: -0.07 Total: -2.74 kcal Total: -75.16 5.55 -69.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079732599.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.102 kcal (2) G-P(sol) polarization free energy of solvation -75.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds