Wall clock time and date at job start Tue Mar 31 2020 05:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37105 * 119.99859 * 2 1 4 4 H 1.07993 * 120.00074 * 202.93768 * 3 2 1 5 5 C 1.38954 * 119.99483 * 22.93421 * 3 2 1 6 6 N 1.31406 * 120.00047 * 18.16859 * 5 3 2 7 7 Si 1.86801 * 119.99424 * 198.16516 * 5 3 2 8 8 H 1.48497 * 109.47108 * 94.98310 * 7 5 3 9 9 H 1.48504 * 109.46951 * 214.98205 * 7 5 3 10 10 H 1.48500 * 109.47276 * 334.98050 * 7 5 3 11 11 C 1.34770 * 120.00384 * 179.72236 * 2 1 3 12 12 O 1.21295 * 120.00643 * 184.31478 * 11 2 1 13 13 C 1.50704 * 120.00114 * 4.31822 * 11 2 1 14 14 H 1.09001 * 109.55403 * 328.69130 * 13 11 2 15 15 S 1.81482 * 109.55658 * 88.89629 * 13 11 2 16 16 C 1.81914 * 101.36140 * 165.50826 * 15 13 11 17 17 C 1.52440 * 108.26563 * 295.08375 * 16 15 13 18 18 C 1.51385 * 111.72116 * 52.13485 * 17 16 15 19 19 S 1.76885 * 121.92728 * 160.33802 * 18 17 16 20 20 C 1.75445 * 91.28734 * 179.42986 * 19 18 17 21 21 C 1.32420 * 109.45725 * 0.21720 * 20 19 18 22 22 C 1.33953 * 128.51126 * 340.35466 * 18 17 16 23 23 H 1.08994 * 109.47546 * 28.00146 * 1 2 3 24 24 H 1.09001 * 109.46868 * 148.00129 * 1 2 3 25 25 H 1.09002 * 109.47245 * 267.99707 * 1 2 3 26 26 H 0.97006 * 119.99680 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.70573 * 54.77673 * 16 15 13 28 28 H 1.09001 * 109.70314 * 175.34625 * 16 15 13 29 29 H 1.09004 * 109.02974 * 172.70939 * 17 16 15 30 30 H 1.08998 * 109.03136 * 291.62892 * 17 16 15 31 31 H 1.08000 * 125.27060 * 180.19980 * 20 19 18 32 32 H 1.07990 * 122.04116 * 180.17394 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1664 1.2244 -0.3645 5 6 1.5379 2.3431 0.4689 6 7 0.4687 2.2584 1.2281 7 14 2.2347 4.0172 0.0201 8 1 1.5223 4.5469 -1.1703 9 1 2.0540 4.9506 1.1610 10 1 3.6815 3.8851 -0.2869 11 6 2.1389 -1.1671 0.0057 12 8 3.3493 -1.1682 0.0847 13 6 1.3887 -2.4709 -0.0863 14 1 0.4133 -2.3649 0.3886 15 16 1.1693 -2.9239 -1.8299 16 6 0.6744 -4.6686 -1.6874 17 6 1.8450 -5.4510 -1.1032 18 6 2.3585 -4.8208 0.1739 19 16 3.3311 -5.7284 1.3396 20 6 3.4674 -4.3225 2.3803 21 6 2.8132 -3.3071 1.8378 22 6 2.1837 -3.5680 0.6146 23 1 -0.3634 0.9073 -0.4824 24 1 -0.3633 -0.8715 -0.5446 25 1 -0.3634 -0.0359 1.0270 26 1 0.0409 3.0652 1.5552 27 1 -0.1896 -4.7529 -1.0282 28 1 0.4243 -5.0613 -2.6730 29 1 1.5209 -6.4700 -0.8913 30 1 2.6532 -5.4801 -1.8339 31 1 4.0019 -4.2904 3.3183 32 1 2.7677 -2.3370 2.3101 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079840247.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:12 Heat of formation + Delta-G solvation = 11.916589 kcal Electronic energy + Delta-G solvation = -18033.155819 eV Core-core repulsion = 15212.126242 eV Total energy + Delta-G solvation = -2821.029577 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.07975 -37.49424 -34.67711 -33.80638 -31.84583 -30.16989 -27.65793 -26.23510 -24.73562 -23.43660 -22.09165 -19.56638 -17.88244 -17.28416 -16.89753 -16.16772 -15.94086 -15.26404 -14.75694 -14.55710 -13.90467 -13.75816 -13.47827 -13.00828 -12.94662 -12.62963 -12.29564 -11.81982 -11.67815 -11.49453 -11.40091 -11.31673 -11.01814 -10.85946 -10.61790 -10.36894 -10.29506 -9.71200 -9.07090 -8.58192 -8.28436 -8.04974 -7.73136 -7.40837 -6.41648 -3.91793 1.21961 1.70593 1.84012 2.16759 2.62367 3.00118 3.15580 3.23466 3.29387 4.00514 4.10071 4.64240 4.74131 4.86959 5.01264 5.11604 5.17998 5.31876 5.51785 5.56775 5.60307 5.74039 5.81847 6.06927 6.29577 6.31567 6.54939 6.76565 6.78013 7.09892 7.50725 8.05251 8.41143 9.11426 9.32625 9.90419 10.63034 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.025816 B = 0.005576 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.326390 B = 5019.947299 C = 5645.328712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.430 5.430 3 C -0.303 4.303 4 H 0.101 0.899 5 C 0.033 3.967 6 N -0.871 5.871 7 Si 0.925 3.075 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.267 1.267 11 C 0.461 3.539 12 O -0.567 6.567 13 C -0.008 4.008 14 H 0.110 0.890 15 S -0.218 6.218 16 C -0.089 4.089 17 C -0.044 4.044 18 C -0.171 4.171 19 S 0.059 5.941 20 C -0.214 4.214 21 C -0.091 4.091 22 C -0.065 4.065 23 H 0.072 0.928 24 H 0.036 0.964 25 H 0.055 0.945 26 H 0.269 0.731 27 H 0.086 0.914 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.164 0.836 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.457 -13.630 -1.347 13.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.148 5.148 3 C -0.432 4.432 4 H 0.119 0.881 5 C -0.171 4.171 6 N -0.509 5.509 7 Si 0.752 3.248 8 H -0.202 1.202 9 H -0.209 1.209 10 H -0.192 1.192 11 C 0.247 3.753 12 O -0.451 6.451 13 C -0.142 4.142 14 H 0.127 0.873 15 S 0.010 5.990 16 C -0.239 4.239 17 C -0.085 4.085 18 C -0.289 4.289 19 S 0.323 5.677 20 C -0.349 4.349 21 C -0.122 4.122 22 C -0.079 4.079 23 H 0.091 0.909 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.105 0.895 28 H 0.130 0.870 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.181 0.819 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.320 -14.345 -2.041 14.550 hybrid contribution -0.528 1.677 1.063 2.055 sum -1.848 -12.668 -0.979 12.839 Atomic orbital electron populations 1.21589 0.81177 1.00243 1.01121 1.43557 1.05535 1.04395 1.61322 1.19710 1.00263 0.83253 1.39939 0.88140 1.25357 0.96722 1.00232 0.94826 1.70028 1.21130 1.29791 1.29977 0.85917 0.79688 0.81098 0.78112 1.20240 1.20893 1.19174 1.18931 0.87845 0.82948 0.85596 1.90554 1.13385 1.85884 1.55267 1.22358 1.01541 0.95943 0.94312 0.87262 1.87267 1.89894 1.11487 1.10302 1.23325 1.00025 0.95483 1.05040 1.20202 0.97729 0.98077 0.92457 1.24271 1.06695 0.96855 1.01037 1.83966 1.53603 1.15285 1.14891 1.25015 1.08833 0.96197 1.04848 1.20222 0.97187 1.00051 0.94735 1.19084 1.00746 0.92288 0.95827 0.90910 0.94527 0.92653 0.92058 0.89509 0.86982 0.90050 0.89260 0.81892 0.83977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.29 8.17 59.85 0.49 2.78 16 2 N -0.43 -11.03 3.01 -122.19 -0.37 -11.39 16 3 C -0.30 -8.41 9.21 -14.93 -0.14 -8.55 16 4 H 0.10 2.94 7.50 -52.49 -0.39 2.55 16 5 C 0.03 0.87 4.93 -17.47 -0.09 0.79 16 6 N -0.87 -22.88 11.07 55.50 0.61 -22.27 16 7 Si 0.93 20.51 29.59 -169.99 -5.03 15.48 16 8 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 C 0.46 11.40 6.03 -10.99 -0.07 11.33 16 12 O -0.57 -15.95 15.17 5.54 0.08 -15.86 16 13 C -0.01 -0.15 2.33 -28.12 -0.07 -0.21 16 14 H 0.11 2.02 6.56 -51.93 -0.34 1.68 16 15 S -0.22 -3.84 21.29 -107.50 -2.29 -6.12 16 16 C -0.09 -1.08 6.52 36.87 0.24 -0.84 16 17 C -0.04 -0.54 5.90 -27.83 -0.16 -0.71 16 18 C -0.17 -2.69 6.28 -35.48 -0.22 -2.91 16 19 S 0.06 0.81 23.25 -107.50 -2.50 -1.69 16 20 C -0.21 -3.32 11.18 28.81 0.32 -3.00 16 21 C -0.09 -1.69 8.56 -40.84 -0.35 -2.04 16 22 C -0.07 -1.21 5.12 -104.54 -0.53 -1.75 16 23 H 0.07 1.70 7.00 -51.93 -0.36 1.33 16 24 H 0.04 0.70 6.19 -51.93 -0.32 0.38 16 25 H 0.05 1.25 7.74 -51.93 -0.40 0.85 16 26 H 0.27 6.66 8.31 -40.82 -0.34 6.33 16 27 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.16 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.14 2.89 7.53 -52.49 -0.40 2.49 16 LS Contribution 290.41 15.07 4.38 4.38 Total: -1.00 -30.90 290.41 -9.15 -40.06 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -3.47 Total: 2.54 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -0.58 Total: -5.12 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.25 Total: -33.66 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.08 Total: -15.86 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -4.79 Total: -7.81 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.90 -9.15 -40.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079840247.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.972 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds