Wall clock time and date at job start Tue Mar 31 2020 05:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37097 * 119.99939 * 2 1 4 4 H 1.08009 * 119.99627 * 152.35908 * 3 2 1 5 5 C 1.38948 * 120.00471 * 332.35890 * 3 2 1 6 6 N 1.31414 * 119.99407 * 330.92697 * 5 3 2 7 7 Si 1.86795 * 120.00254 * 151.20526 * 5 3 2 8 8 H 1.48503 * 109.46954 * 179.72601 * 7 5 3 9 9 H 1.48502 * 109.46806 * 299.72493 * 7 5 3 10 10 H 1.48499 * 109.46998 * 59.72352 * 7 5 3 11 11 C 1.34784 * 119.99777 * 180.02562 * 2 1 3 12 12 O 1.21290 * 119.99655 * 180.02562 * 11 2 1 13 13 C 1.50695 * 119.99957 * 359.97438 * 11 2 1 14 14 H 1.09001 * 109.55820 * 29.99955 * 13 11 2 15 15 S 1.81484 * 109.55867 * 269.79445 * 13 11 2 16 16 C 1.82001 * 101.32701 * 194.55880 * 15 13 11 17 17 C 1.52435 * 108.35968 * 64.78300 * 16 15 13 18 18 C 1.51387 * 111.72662 * 307.92188 * 17 16 15 19 19 S 1.76882 * 121.92859 * 199.52138 * 18 17 16 20 20 C 1.75445 * 91.29047 * 180.59532 * 19 18 17 21 21 C 1.32419 * 109.45238 * 359.80543 * 20 19 18 22 22 C 1.33949 * 128.51313 * 19.62955 * 18 17 16 23 23 H 1.09003 * 109.47348 * 94.86359 * 1 2 3 24 24 H 1.09002 * 109.47294 * 214.86416 * 1 2 3 25 25 H 1.09002 * 109.47198 * 334.86110 * 1 2 3 26 26 H 0.96994 * 120.00135 * 353.95744 * 6 5 3 27 27 H 1.09001 * 109.62569 * 305.07691 * 16 15 13 28 28 H 1.09006 * 109.72334 * 184.54442 * 16 15 13 29 29 H 1.08996 * 109.03571 * 187.33963 * 17 16 15 30 30 H 1.09008 * 108.96920 * 68.45505 * 17 16 15 31 31 H 1.07997 * 125.27274 * 179.80535 * 20 19 18 32 32 H 1.07995 * 122.03594 * 179.86573 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1381 1.2406 0.4340 5 6 1.5747 2.3220 -0.5582 6 7 0.7124 2.2045 -1.5429 7 14 2.0323 4.0147 0.0856 8 1 1.2906 5.0513 -0.6764 9 1 1.6776 4.1095 1.5246 10 1 3.4925 4.2289 -0.0793 11 6 2.1388 -1.1673 -0.0005 12 8 3.3517 -1.1673 -0.0001 13 6 1.3853 -2.4723 -0.0005 14 1 0.4323 -2.3434 -0.5137 15 16 1.0875 -3.0019 1.7096 16 6 0.6014 -4.7389 1.4664 17 6 1.7959 -5.4967 0.8984 18 6 2.3650 -4.8101 -0.3249 19 16 3.3900 -5.6650 -1.4856 20 6 3.5712 -4.2138 -2.4547 21 6 2.8925 -3.2232 -1.8966 22 6 2.2100 -3.5381 -0.7153 23 1 -0.3634 -0.0871 -1.0240 24 1 -0.3634 -0.8432 0.5875 25 1 -0.3634 0.9303 0.4366 26 1 0.5435 1.3352 -1.9385 27 1 -0.2332 -4.7910 0.7672 28 1 0.3089 -5.1761 2.4211 29 1 1.4810 -6.5041 0.6263 30 1 2.5706 -5.5610 1.6625 31 1 4.1470 -4.1399 -3.3654 32 1 2.8666 -2.2329 -2.3266 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079840251.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:15 Heat of formation + Delta-G solvation = 8.223377 kcal Electronic energy + Delta-G solvation = -18080.104118 eV Core-core repulsion = 15258.914391 eV Total energy + Delta-G solvation = -2821.189726 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.19810 -37.62564 -34.93719 -33.87416 -31.83606 -30.17308 -27.69360 -26.43024 -24.61380 -23.34035 -22.16457 -19.75926 -17.97717 -17.62883 -17.15800 -16.17992 -16.01706 -15.35355 -14.97548 -14.26780 -14.11019 -13.76473 -13.62502 -13.11503 -13.05261 -12.69909 -12.41875 -11.97233 -11.78036 -11.74587 -11.50091 -11.23285 -11.06540 -10.84571 -10.64065 -10.22836 -10.06351 -9.79702 -9.00606 -8.60533 -8.33921 -8.11992 -7.90078 -7.49593 -6.72340 -3.95923 1.15186 1.62645 1.76955 2.10321 2.53729 2.92483 3.30153 3.34119 3.53813 3.93773 4.15895 4.57495 4.62246 4.78580 4.94781 5.01899 5.11424 5.25093 5.44652 5.46194 5.50321 5.61653 5.74830 5.98964 6.03130 6.22435 6.28668 6.47775 6.57038 6.69126 7.79893 8.03606 8.53178 8.83575 9.30652 9.78109 10.52856 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.025721 B = 0.005643 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.346899 B = 4960.795791 C = 5610.758364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.438 5.438 3 C -0.398 4.398 4 H 0.092 0.908 5 C 0.012 3.988 6 N -0.866 5.866 7 Si 1.073 2.927 8 H -0.279 1.279 9 H -0.282 1.282 10 H -0.282 1.282 11 C 0.463 3.537 12 O -0.559 6.559 13 C -0.009 4.009 14 H 0.107 0.893 15 S -0.219 6.219 16 C -0.088 4.088 17 C -0.044 4.044 18 C -0.171 4.171 19 S 0.063 5.937 20 C -0.213 4.213 21 C -0.094 4.094 22 C -0.067 4.067 23 H 0.044 0.956 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.275 0.725 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.164 0.836 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.600 -14.076 1.428 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.158 5.158 3 C -0.526 4.526 4 H 0.109 0.891 5 C -0.197 4.197 6 N -0.500 5.500 7 Si 0.899 3.101 8 H -0.204 1.204 9 H -0.209 1.209 10 H -0.208 1.208 11 C 0.249 3.751 12 O -0.442 6.442 13 C -0.143 4.143 14 H 0.125 0.875 15 S 0.010 5.990 16 C -0.238 4.238 17 C -0.085 4.085 18 C -0.288 4.288 19 S 0.327 5.673 20 C -0.348 4.348 21 C -0.124 4.124 22 C -0.081 4.081 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.131 0.869 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.182 0.818 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.717 -13.352 2.089 13.623 hybrid contribution -0.336 -0.858 -1.070 1.412 sum -2.053 -14.210 1.019 14.394 Atomic orbital electron populations 1.21797 0.82441 1.02250 1.00359 1.43591 1.04652 1.04948 1.62611 1.20403 1.05092 0.85638 1.41443 0.89062 1.26445 0.95836 1.03866 0.93543 1.70777 1.33879 1.28174 1.17170 0.83447 0.76554 0.73929 0.76201 1.20436 1.20862 1.20787 1.19035 0.87807 0.82909 0.85375 1.90557 1.13108 1.85892 1.54596 1.22403 1.01032 0.96087 0.94749 0.87549 1.87296 1.89031 1.11323 1.11395 1.23339 0.99854 0.95526 1.05075 1.20203 0.97161 0.97778 0.93355 1.24280 1.06165 0.96716 1.01641 1.83980 1.50416 1.14232 1.18645 1.25027 1.08367 0.95957 1.05407 1.20202 0.97027 1.00351 0.94861 1.19050 1.00603 0.92105 0.96341 0.93704 0.92794 0.90616 0.91390 0.89512 0.86903 0.89943 0.89198 0.81817 0.84126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.63 8.01 59.85 0.48 2.11 16 2 N -0.44 -11.13 2.84 -122.19 -0.35 -11.48 16 3 C -0.40 -11.12 8.98 -14.93 -0.13 -11.25 16 4 H 0.09 2.74 7.63 -52.48 -0.40 2.34 16 5 C 0.01 0.31 4.62 -17.47 -0.08 0.23 16 6 N -0.87 -23.58 12.81 55.50 0.71 -22.87 16 7 Si 1.07 23.51 30.01 -169.99 -5.10 18.41 16 8 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 9 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 11 C 0.46 11.41 6.00 -10.98 -0.07 11.34 16 12 O -0.56 -15.84 15.30 5.55 0.08 -15.76 16 13 C -0.01 -0.17 2.32 -28.12 -0.07 -0.23 16 14 H 0.11 1.93 6.73 -51.93 -0.35 1.58 16 15 S -0.22 -3.81 21.16 -107.50 -2.27 -6.09 16 16 C -0.09 -1.06 6.52 36.87 0.24 -0.82 16 17 C -0.04 -0.54 5.91 -27.84 -0.16 -0.70 16 18 C -0.17 -2.66 6.28 -35.48 -0.22 -2.88 16 19 S 0.06 0.87 23.25 -107.50 -2.50 -1.63 16 20 C -0.21 -3.29 11.18 28.81 0.32 -2.97 16 21 C -0.09 -1.74 8.59 -40.84 -0.35 -2.09 16 22 C -0.07 -1.24 5.12 -104.54 -0.53 -1.77 16 23 H 0.04 0.93 7.02 -51.93 -0.36 0.57 16 24 H 0.05 1.00 6.39 -51.93 -0.33 0.67 16 25 H 0.08 1.69 7.38 -51.93 -0.38 1.31 16 26 H 0.28 7.48 6.60 -40.82 -0.27 7.21 16 27 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.09 8.14 -51.92 -0.42 0.66 16 31 H 0.16 2.09 8.06 -52.49 -0.42 1.67 16 32 H 0.14 2.86 7.56 -52.49 -0.40 2.46 16 LS Contribution 290.13 15.07 4.37 4.37 Total: -1.00 -31.89 290.13 -9.04 -40.93 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -3.40 Total: 3.16 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -0.58 Total: -9.04 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.36 Total: -34.35 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.08 Total: -15.76 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -5.10 Total: 18.41 kcal Atomic # 16 Polarization: -2.94 SS G_CDS: -4.77 Total: -7.72 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.89 -9.04 -40.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079840251.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.151 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds