Wall clock time and date at job start Tue Mar 31 2020 05:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37097 * 119.99939 * 2 1 4 4 H 1.08009 * 119.99627 * 152.35908 * 3 2 1 5 5 C 1.38948 * 120.00471 * 332.35890 * 3 2 1 6 6 N 1.31414 * 119.99407 * 330.92697 * 5 3 2 7 7 Si 1.86795 * 120.00254 * 151.20526 * 5 3 2 8 8 H 1.48503 * 109.46954 * 179.72601 * 7 5 3 9 9 H 1.48502 * 109.46806 * 299.72493 * 7 5 3 10 10 H 1.48499 * 109.46998 * 59.72352 * 7 5 3 11 11 C 1.34784 * 119.99777 * 180.02562 * 2 1 3 12 12 O 1.21290 * 119.99655 * 180.02562 * 11 2 1 13 13 C 1.50695 * 119.99957 * 359.97438 * 11 2 1 14 14 H 1.09001 * 109.55820 * 29.99955 * 13 11 2 15 15 S 1.81484 * 109.55867 * 269.79445 * 13 11 2 16 16 C 1.82001 * 101.32701 * 194.55880 * 15 13 11 17 17 C 1.52435 * 108.35968 * 64.78300 * 16 15 13 18 18 C 1.51387 * 111.72662 * 307.92188 * 17 16 15 19 19 S 1.76882 * 121.92859 * 199.52138 * 18 17 16 20 20 C 1.75445 * 91.29047 * 180.59532 * 19 18 17 21 21 C 1.32419 * 109.45238 * 359.80543 * 20 19 18 22 22 C 1.33949 * 128.51313 * 19.62955 * 18 17 16 23 23 H 1.09003 * 109.47348 * 94.86359 * 1 2 3 24 24 H 1.09002 * 109.47294 * 214.86416 * 1 2 3 25 25 H 1.09002 * 109.47198 * 334.86110 * 1 2 3 26 26 H 0.96994 * 120.00135 * 353.95744 * 6 5 3 27 27 H 1.09001 * 109.62569 * 305.07691 * 16 15 13 28 28 H 1.09006 * 109.72334 * 184.54442 * 16 15 13 29 29 H 1.08996 * 109.03571 * 187.33963 * 17 16 15 30 30 H 1.09008 * 108.96920 * 68.45505 * 17 16 15 31 31 H 1.07997 * 125.27274 * 179.80535 * 20 19 18 32 32 H 1.07995 * 122.03594 * 179.86573 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1381 1.2406 0.4340 5 6 1.5747 2.3220 -0.5582 6 7 0.7124 2.2045 -1.5429 7 14 2.0323 4.0147 0.0856 8 1 1.2906 5.0513 -0.6764 9 1 1.6776 4.1095 1.5246 10 1 3.4925 4.2289 -0.0793 11 6 2.1388 -1.1673 -0.0005 12 8 3.3517 -1.1673 -0.0001 13 6 1.3853 -2.4723 -0.0005 14 1 0.4323 -2.3434 -0.5137 15 16 1.0875 -3.0019 1.7096 16 6 0.6014 -4.7389 1.4664 17 6 1.7959 -5.4967 0.8984 18 6 2.3650 -4.8101 -0.3249 19 16 3.3900 -5.6650 -1.4856 20 6 3.5712 -4.2138 -2.4547 21 6 2.8925 -3.2232 -1.8966 22 6 2.2100 -3.5381 -0.7153 23 1 -0.3634 -0.0871 -1.0240 24 1 -0.3634 -0.8432 0.5875 25 1 -0.3634 0.9303 0.4366 26 1 0.5435 1.3352 -1.9385 27 1 -0.2332 -4.7910 0.7672 28 1 0.3089 -5.1761 2.4211 29 1 1.4810 -6.5041 0.6263 30 1 2.5706 -5.5610 1.6625 31 1 4.1470 -4.1399 -3.3654 32 1 2.8666 -2.2329 -2.3266 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079840251.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:15 Heat of formation + Delta-G solvation = -11.220889 kcal Electronic energy + Delta-G solvation = -18080.947284 eV Core-core repulsion = 15258.914391 eV Total energy + Delta-G solvation = -2822.032893 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.93271 -39.11087 -36.94034 -34.94381 -33.82794 -31.70680 -28.98499 -28.25822 -26.32222 -24.81209 -23.37275 -21.53375 -19.52125 -19.29596 -18.61705 -17.93519 -17.35972 -16.83771 -16.66792 -15.83194 -15.55169 -15.43700 -14.74282 -14.61623 -14.44351 -14.11606 -13.86881 -13.74408 -13.66564 -13.10694 -12.87414 -12.67585 -12.56315 -12.38753 -12.04291 -11.92984 -11.86973 -11.07420 -10.97159 -10.48269 -9.94646 -9.63460 -9.29439 -8.87428 -8.83584 -6.12350 -0.09555 0.29390 0.57454 0.85969 1.35334 1.48671 1.53737 1.58072 1.82023 2.09184 2.35160 2.78762 2.97296 3.41655 3.63134 3.77857 3.87674 4.01282 4.13563 4.30433 4.30999 4.37305 4.53181 4.64705 4.70956 4.77407 4.88145 4.94241 5.21041 5.38689 5.71053 5.82750 6.50637 6.80373 7.27828 7.79371 8.39228 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.025721 B = 0.005643 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.346899 B = 4960.795791 C = 5610.758364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.457 5.457 3 C -0.432 4.432 4 H 0.057 0.943 5 C -0.017 4.017 6 N -0.877 5.877 7 Si 1.121 2.879 8 H -0.270 1.270 9 H -0.267 1.267 10 H -0.278 1.278 11 C 0.462 3.538 12 O -0.606 6.606 13 C 0.002 3.998 14 H 0.113 0.887 15 S -0.261 6.261 16 C -0.068 4.068 17 C -0.048 4.048 18 C -0.170 4.170 19 S 0.143 5.857 20 C -0.216 4.216 21 C -0.130 4.130 22 C -0.107 4.107 23 H 0.047 0.953 24 H 0.083 0.917 25 H 0.063 0.937 26 H 0.265 0.735 27 H 0.104 0.896 28 H 0.150 0.850 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.185 0.815 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.460 -17.031 2.245 17.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.177 5.177 3 C -0.559 4.559 4 H 0.075 0.925 5 C -0.221 4.221 6 N -0.511 5.511 7 Si 0.940 3.060 8 H -0.195 1.195 9 H -0.192 1.192 10 H -0.203 1.203 11 C 0.250 3.750 12 O -0.492 6.492 13 C -0.132 4.132 14 H 0.131 0.869 15 S -0.033 6.033 16 C -0.217 4.217 17 C -0.089 4.089 18 C -0.288 4.288 19 S 0.407 5.593 20 C -0.351 4.351 21 C -0.161 4.161 22 C -0.121 4.121 23 H 0.065 0.935 24 H 0.101 0.899 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.122 0.878 28 H 0.168 0.832 29 H 0.143 0.857 30 H 0.114 0.886 31 H 0.203 0.797 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.607 -16.318 2.897 16.776 hybrid contribution -0.005 -0.199 -1.332 1.347 sum -2.613 -16.516 1.565 16.794 Atomic orbital electron populations 1.21789 0.80279 1.02810 1.00874 1.43784 1.06075 1.04714 1.63136 1.20297 1.04744 0.87783 1.43099 0.92503 1.27768 0.94946 1.06705 0.92722 1.70879 1.34811 1.27558 1.17815 0.82867 0.76567 0.70007 0.76552 1.19488 1.19162 1.20325 1.19860 0.87622 0.84554 0.82940 1.90498 1.15489 1.87153 1.56054 1.22013 1.00736 0.93766 0.96696 0.86878 1.87319 1.89362 1.17135 1.09445 1.23570 1.00259 0.90287 1.07553 1.20431 0.97286 0.99244 0.91912 1.24855 1.05135 0.96069 1.02704 1.83671 1.48221 1.11234 1.16146 1.25382 1.06974 0.96638 1.06135 1.20070 0.99907 0.99716 0.96396 1.19014 1.02750 0.93234 0.97071 0.93500 0.89905 0.91801 0.92443 0.87778 0.83181 0.85677 0.88562 0.79741 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.80 8.01 127.77 1.02 4.82 16 2 N -0.46 -24.45 2.84 -658.88 -1.87 -26.33 16 3 C -0.43 -25.52 8.98 84.04 0.75 -24.76 16 4 H 0.06 3.67 7.63 -2.91 -0.02 3.65 16 5 C -0.02 -0.93 4.62 84.93 0.39 -0.54 16 6 N -0.88 -49.14 12.81 21.66 0.28 -48.86 16 7 Si 1.12 48.37 30.01 68.60 2.06 50.43 16 8 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 9 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 10 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 11 C 0.46 24.01 6.00 87.65 0.53 24.54 16 12 O -0.61 -36.63 15.30 -3.06 -0.05 -36.67 16 13 C 0.00 0.06 2.32 29.70 0.07 0.13 16 14 H 0.11 4.16 6.73 -2.39 -0.02 4.15 16 15 S -0.26 -8.73 21.16 -56.49 -1.20 -9.92 16 16 C -0.07 -1.32 6.52 71.79 0.47 -0.85 16 17 C -0.05 -0.95 5.91 29.88 0.18 -0.77 16 18 C -0.17 -4.82 6.28 24.93 0.16 -4.66 16 19 S 0.14 3.43 23.25 -56.49 -1.31 2.12 16 20 C -0.22 -6.52 11.18 66.71 0.75 -5.77 16 21 C -0.13 -4.99 8.59 21.59 0.19 -4.80 16 22 C -0.11 -3.93 5.12 -19.81 -0.10 -4.03 16 23 H 0.05 2.02 7.02 -2.39 -0.02 2.00 16 24 H 0.08 3.11 6.39 -2.39 -0.02 3.09 16 25 H 0.06 2.93 7.38 -2.39 -0.02 2.92 16 26 H 0.27 15.05 6.60 -92.71 -0.61 14.44 16 27 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.15 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.19 4.52 8.06 -2.91 -0.02 4.50 16 32 H 0.10 4.59 7.56 -2.91 -0.02 4.57 16 Total: -1.00 -74.78 290.13 3.60 -71.17 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 1.30 Total: 14.77 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 4.40 Total: -16.71 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -1.59 Total: -75.19 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.05 Total: -36.67 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 2.06 Total: 50.43 kcal Atomic # 16 Polarization: -5.29 SS G_CDS: -2.51 Total: -7.80 kcal Total: -74.78 3.60 -71.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079840251.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.952 kcal (2) G-P(sol) polarization free energy of solvation -74.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds