Wall clock time and date at job start Tue Mar 31 2020 05:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38334 * 119.92039 * 2 1 4 4 C 1.38047 * 120.09514 * 180.25522 * 3 2 1 5 5 C 1.39062 * 119.93123 * 359.43970 * 4 3 2 6 6 N 1.39529 * 120.07812 * 180.25963 * 5 4 3 7 7 C 1.34773 * 119.99848 * 33.39651 * 6 5 4 8 8 O 1.21742 * 120.00209 * 5.27760 * 7 6 5 9 9 C 1.46169 * 119.99687 * 185.28076 * 7 6 5 10 10 H 1.07996 * 120.00162 * 359.97438 * 9 7 6 11 11 C 1.40134 * 119.99842 * 180.02562 * 9 7 6 12 12 N 1.30632 * 119.99753 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 120.00026 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47023 * 59.99716 * 13 11 9 15 15 H 1.48500 * 109.47418 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47187 * 300.00459 * 13 11 9 17 17 C 1.38995 * 119.84543 * 0.27606 * 5 4 3 18 18 C 1.38176 * 119.90437 * 0.02562 * 17 5 4 19 19 Br 1.89098 * 119.96573 * 180.02562 * 18 17 5 20 20 H 1.08994 * 109.47593 * 270.30728 * 1 2 3 21 21 H 1.09002 * 109.46898 * 30.30866 * 1 2 3 22 22 H 1.08997 * 109.46793 * 150.30083 * 1 2 3 23 23 H 1.08003 * 119.95858 * 359.97435 * 3 2 1 24 24 H 1.07992 * 120.03648 * 179.72122 * 4 3 2 25 25 H 0.96998 * 119.99977 * 213.40197 * 6 5 4 26 26 H 0.97001 * 119.99654 * 179.97438 * 12 11 9 27 27 H 1.07996 * 120.04617 * 179.97438 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1990 0.0000 4 6 3.5775 1.2032 -0.0053 5 6 4.2751 0.0002 0.0011 6 7 5.6704 0.0009 0.0012 7 6 6.3436 0.9791 0.6386 8 8 5.7383 1.8073 1.2942 9 6 7.8006 1.0457 0.5425 10 1 8.3377 0.3108 -0.0388 11 6 8.5008 2.0625 1.2057 12 7 7.8512 2.9510 1.9092 13 14 10.3628 2.1472 1.0836 14 1 10.7588 2.3075 -0.3387 15 1 10.8583 3.3056 1.8696 16 1 10.9518 0.8952 1.6231 17 6 3.5791 -1.2029 0.0070 18 6 2.1974 -1.1995 0.0060 19 35 1.2488 -2.8353 0.0148 20 1 -0.3634 0.0055 1.0276 21 1 -0.3633 0.8872 -0.5186 22 1 -0.3633 -0.8927 -0.5091 23 1 1.6551 2.1332 -0.0004 24 1 4.1152 2.1397 -0.0099 25 1 6.1558 -0.7025 -0.4575 26 1 8.3359 3.6546 2.3685 27 1 4.1176 -2.1391 0.0116 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082254991.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:04 Heat of formation + Delta-G solvation = -20.146579 kcal Electronic energy + Delta-G solvation = -14117.348866 eV Core-core repulsion = 11499.871569 eV Total energy + Delta-G solvation = -2617.477298 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.40779 -37.25612 -33.98445 -32.58539 -31.80554 -30.91788 -28.98438 -27.01080 -25.22670 -22.27573 -21.44739 -19.62579 -17.67515 -16.35684 -15.64850 -15.03485 -14.90733 -14.14097 -13.72337 -13.51280 -13.12817 -12.73718 -12.60957 -12.01791 -11.84759 -11.45550 -11.24017 -11.13315 -10.83019 -10.69366 -10.50144 -10.41056 -9.94201 -9.26167 -8.92204 -8.39840 -7.83805 -7.14703 -6.40770 -4.88526 1.62553 1.77329 1.89389 3.05547 3.11017 3.12754 3.93777 4.03289 4.44491 4.53584 5.13675 5.23298 5.49063 5.58796 5.75595 5.78464 5.92554 6.04034 6.18653 6.22911 6.57280 6.89141 6.92878 7.17408 7.24013 7.64812 7.94688 8.08521 8.78871 9.12745 10.30739 10.49963 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.043604 B = 0.004253 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.992562 B = 6582.685758 C = 7096.314121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.108 4.108 3 C -0.095 4.095 4 C -0.110 4.110 5 C 0.196 3.804 6 N -0.698 5.698 7 C 0.542 3.458 8 O -0.559 6.559 9 C -0.538 4.538 10 H 0.072 0.928 11 C 0.086 3.914 12 N -0.758 5.758 13 Si 0.914 3.086 14 H -0.266 1.266 15 H -0.279 1.279 16 H -0.266 1.266 17 C -0.148 4.148 18 C -0.066 4.066 19 Br -0.070 7.070 20 H 0.067 0.933 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.125 0.875 24 H 0.144 0.856 25 H 0.395 0.605 26 H 0.273 0.727 27 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.112 -8.512 -4.920 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.111 4.111 3 C -0.115 4.115 4 C -0.131 4.131 5 C 0.096 3.904 6 N -0.341 5.341 7 C 0.349 3.651 8 O -0.441 6.441 9 C -0.573 4.573 10 H 0.091 0.909 11 C -0.135 4.135 12 N -0.386 5.386 13 Si 0.738 3.262 14 H -0.191 1.191 15 H -0.204 1.204 16 H -0.191 1.191 17 C -0.172 4.172 18 C -0.146 4.146 19 Br 0.015 6.985 20 H 0.086 0.914 21 H 0.083 0.917 22 H 0.087 0.913 23 H 0.143 0.857 24 H 0.162 0.838 25 H 0.228 0.772 26 H 0.084 0.916 27 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.768 -8.308 -4.304 15.034 hybrid contribution 1.464 -0.015 -0.192 1.476 sum -10.304 -8.323 -4.496 13.988 Atomic orbital electron populations 1.20831 0.91131 1.02729 1.02277 1.19534 0.95912 0.91595 1.04064 1.20847 0.93851 0.96604 1.00159 1.21503 0.93555 0.98910 0.99160 1.17857 0.85379 0.92497 0.94702 1.44196 1.02135 1.31270 1.56510 1.18399 0.88537 0.79512 0.78638 1.90642 1.69637 1.40563 1.43271 1.20825 0.89557 1.13944 1.33023 0.90937 1.25751 1.00377 0.94221 0.93176 1.69967 1.37075 1.10235 1.21329 0.86320 0.82191 0.78519 0.79161 1.19069 1.20357 1.19090 1.20758 0.92048 0.97665 1.06684 1.21215 0.93785 0.90061 1.09544 1.96547 1.75728 1.28352 1.97860 0.91397 0.91702 0.91251 0.85716 0.83809 0.77188 0.91585 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.55 36.01 0.34 -1.05 15 2 C -0.11 -1.70 5.89 -104.53 -0.62 -2.32 15 3 C -0.10 -1.62 9.69 -39.62 -0.38 -2.01 15 4 C -0.11 -2.27 8.65 -39.35 -0.34 -2.61 15 5 C 0.20 4.02 6.27 -83.77 -0.53 3.50 15 6 N -0.70 -15.33 5.32 -11.20 -0.06 -15.39 15 7 C 0.54 14.67 7.47 -13.08 -0.10 14.58 15 8 O -0.56 -17.02 12.70 5.15 0.07 -16.95 15 9 C -0.54 -14.37 9.54 -35.69 -0.34 -14.71 15 10 H 0.07 1.75 7.85 -52.49 -0.41 1.34 15 11 C 0.09 2.28 5.50 -17.35 -0.10 2.19 15 12 N -0.76 -21.60 11.82 55.55 0.66 -20.95 15 13 Si 0.91 19.15 29.56 -169.99 -5.02 14.13 15 14 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 15 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15 16 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 17 C -0.15 -2.62 9.71 -39.32 -0.38 -3.00 15 18 C -0.07 -1.08 6.22 -39.55 -0.25 -1.33 15 19 Br -0.07 -0.95 31.77 -68.01 -2.16 -3.11 15 20 H 0.07 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.06 0.69 8.09 -51.93 -0.42 0.27 15 22 H 0.07 0.81 6.63 -51.93 -0.34 0.46 15 23 H 0.12 1.81 8.06 -52.48 -0.42 1.39 15 24 H 0.14 3.35 6.41 -52.49 -0.34 3.02 15 25 H 0.39 7.39 8.79 -40.82 -0.36 7.03 15 26 H 0.27 7.07 8.29 -40.82 -0.34 6.73 15 27 H 0.13 2.01 8.06 -52.49 -0.42 1.59 15 LS Contribution 261.31 15.07 3.94 3.94 Total: -1.00 -30.73 261.31 -7.54 -38.27 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -2.27 Total: 6.81 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -2.68 Total: -6.75 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.60 Total: -36.34 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.07 Total: -16.95 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Atomic # 35 Polarization: -0.95 SS G_CDS: -2.16 Total: -3.11 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.73 -7.54 -38.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254991.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.126 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds