Wall clock time and date at job start Tue Mar 31 2020 05:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38334 * 119.92039 * 2 1 4 4 C 1.38047 * 120.09514 * 180.25522 * 3 2 1 5 5 C 1.39062 * 119.93123 * 359.43970 * 4 3 2 6 6 N 1.39529 * 120.07812 * 180.25963 * 5 4 3 7 7 C 1.34773 * 119.99848 * 33.39651 * 6 5 4 8 8 O 1.21742 * 120.00209 * 5.27760 * 7 6 5 9 9 C 1.46169 * 119.99687 * 185.28076 * 7 6 5 10 10 H 1.07996 * 120.00162 * 359.97438 * 9 7 6 11 11 C 1.40134 * 119.99842 * 180.02562 * 9 7 6 12 12 N 1.30632 * 119.99753 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 120.00026 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47023 * 59.99716 * 13 11 9 15 15 H 1.48500 * 109.47418 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47187 * 300.00459 * 13 11 9 17 17 C 1.38995 * 119.84543 * 0.27606 * 5 4 3 18 18 C 1.38176 * 119.90437 * 0.02562 * 17 5 4 19 19 Br 1.89098 * 119.96573 * 180.02562 * 18 17 5 20 20 H 1.08994 * 109.47593 * 270.30728 * 1 2 3 21 21 H 1.09002 * 109.46898 * 30.30866 * 1 2 3 22 22 H 1.08997 * 109.46793 * 150.30083 * 1 2 3 23 23 H 1.08003 * 119.95858 * 359.97435 * 3 2 1 24 24 H 1.07992 * 120.03648 * 179.72122 * 4 3 2 25 25 H 0.96998 * 119.99977 * 213.40197 * 6 5 4 26 26 H 0.97001 * 119.99654 * 179.97438 * 12 11 9 27 27 H 1.07996 * 120.04617 * 179.97438 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1990 0.0000 4 6 3.5775 1.2032 -0.0053 5 6 4.2751 0.0002 0.0011 6 7 5.6704 0.0009 0.0012 7 6 6.3436 0.9791 0.6386 8 8 5.7383 1.8073 1.2942 9 6 7.8006 1.0457 0.5425 10 1 8.3377 0.3108 -0.0388 11 6 8.5008 2.0625 1.2057 12 7 7.8512 2.9510 1.9092 13 14 10.3628 2.1472 1.0836 14 1 10.7588 2.3075 -0.3387 15 1 10.8583 3.3056 1.8696 16 1 10.9518 0.8952 1.6231 17 6 3.5791 -1.2029 0.0070 18 6 2.1974 -1.1995 0.0060 19 35 1.2488 -2.8353 0.0148 20 1 -0.3634 0.0055 1.0276 21 1 -0.3633 0.8872 -0.5186 22 1 -0.3633 -0.8927 -0.5091 23 1 1.6551 2.1332 -0.0004 24 1 4.1152 2.1397 -0.0099 25 1 6.1558 -0.7025 -0.4575 26 1 8.3359 3.6546 2.3685 27 1 4.1176 -2.1391 0.0116 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082254991.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:03 Heat of formation + Delta-G solvation = -39.769107 kcal Electronic energy + Delta-G solvation = -14118.199763 eV Core-core repulsion = 11499.871569 eV Total energy + Delta-G solvation = -2618.328194 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.97439 -39.02291 -35.71935 -34.60464 -33.15626 -32.38180 -30.31210 -28.85030 -26.71633 -23.74213 -23.04557 -21.33197 -19.53895 -17.98647 -17.60202 -16.50637 -16.36787 -15.85609 -15.03708 -15.01866 -14.67474 -14.41398 -14.28794 -13.26291 -13.21841 -13.05990 -12.78463 -12.76190 -12.56941 -12.21044 -12.07567 -11.85106 -11.10245 -11.01148 -10.70914 -9.99080 -9.69123 -8.76065 -8.38894 -6.96997 0.19704 0.34743 0.60482 1.39781 1.42236 1.54779 2.19984 2.31460 2.71485 2.89176 3.54618 3.85127 4.01185 4.23463 4.36479 4.54264 4.75367 4.82699 4.85451 5.09390 5.23113 5.26466 5.40611 5.52106 5.69802 5.79727 6.12445 6.29188 6.75812 7.28551 8.31327 8.54280 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.043604 B = 0.004253 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.992562 B = 6582.685758 C = 7096.314121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.096 4.096 3 C -0.094 4.094 4 C -0.135 4.135 5 C 0.162 3.838 6 N -0.692 5.692 7 C 0.530 3.470 8 O -0.605 6.605 9 C -0.566 4.566 10 H 0.093 0.907 11 C 0.030 3.970 12 N -0.812 5.812 13 Si 1.001 2.999 14 H -0.253 1.253 15 H -0.274 1.274 16 H -0.254 1.254 17 C -0.139 4.139 18 C -0.076 4.076 19 Br -0.034 7.034 20 H 0.080 0.920 21 H 0.085 0.915 22 H 0.079 0.921 23 H 0.149 0.851 24 H 0.105 0.895 25 H 0.408 0.592 26 H 0.278 0.722 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.741 -10.103 -5.543 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.113 4.113 4 C -0.157 4.157 5 C 0.063 3.937 6 N -0.337 5.337 7 C 0.337 3.663 8 O -0.491 6.491 9 C -0.601 4.601 10 H 0.112 0.888 11 C -0.186 4.186 12 N -0.440 5.440 13 Si 0.820 3.180 14 H -0.177 1.177 15 H -0.198 1.198 16 H -0.178 1.178 17 C -0.162 4.162 18 C -0.156 4.156 19 Br 0.052 6.948 20 H 0.099 0.901 21 H 0.103 0.897 22 H 0.098 0.902 23 H 0.166 0.834 24 H 0.123 0.877 25 H 0.244 0.756 26 H 0.088 0.912 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.438 -9.953 -4.962 16.685 hybrid contribution 1.438 0.374 -0.032 1.486 sum -11.000 -9.580 -4.994 15.418 Atomic orbital electron populations 1.20931 0.88064 1.04339 1.03525 1.19989 0.98011 0.90715 1.01239 1.21079 0.92424 0.98536 0.99306 1.21346 0.95199 0.97574 1.01554 1.18052 0.84657 0.93694 0.97275 1.43718 1.03080 1.30595 1.56261 1.18725 0.89255 0.79825 0.78520 1.90597 1.70626 1.42543 1.45311 1.21385 0.89975 1.14990 1.33762 0.88849 1.27002 1.06479 0.93168 0.91986 1.70130 1.39839 1.11343 1.22727 0.85013 0.74291 0.78964 0.79750 1.17726 1.19840 1.17762 1.20886 0.92861 0.97057 1.05445 1.21519 0.93653 0.92045 1.08399 1.96579 1.74639 1.25876 1.97719 0.90131 0.89658 0.90186 0.83365 0.87727 0.75633 0.91161 0.83921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.36 9.55 71.24 0.68 -1.68 15 2 C -0.10 -2.84 5.89 -19.80 -0.12 -2.96 15 3 C -0.09 -3.18 9.69 22.25 0.22 -2.97 15 4 C -0.14 -5.83 8.65 22.42 0.19 -5.63 15 5 C 0.16 6.82 6.27 38.30 0.24 7.06 15 6 N -0.69 -31.49 5.32 -307.54 -1.64 -33.13 15 7 C 0.53 29.99 7.47 86.30 0.64 30.64 15 8 O -0.61 -39.05 12.70 -4.48 -0.06 -39.11 15 9 C -0.57 -30.92 9.54 24.79 0.24 -30.68 15 10 H 0.09 4.51 7.85 -2.91 -0.02 4.49 15 11 C 0.03 1.63 5.50 85.33 0.47 2.10 15 12 N -0.81 -48.01 11.82 21.85 0.26 -47.75 15 13 Si 1.00 39.32 29.56 68.60 2.03 41.35 15 14 H -0.25 -9.36 7.11 99.48 0.71 -8.65 15 15 H -0.27 -10.41 7.11 99.48 0.71 -9.70 15 16 H -0.25 -9.38 7.11 99.48 0.71 -8.68 15 17 C -0.14 -4.82 9.71 22.44 0.22 -4.60 15 18 C -0.08 -2.34 6.22 22.29 0.14 -2.20 15 19 Br -0.03 -0.80 31.77 -20.37 -0.65 -1.45 15 20 H 0.08 1.57 8.14 -2.39 -0.02 1.55 15 21 H 0.08 1.49 8.09 -2.39 -0.02 1.47 15 22 H 0.08 1.54 6.63 -2.39 -0.02 1.53 15 23 H 0.15 4.16 8.06 -2.91 -0.02 4.14 15 24 H 0.10 5.31 6.41 -2.91 -0.02 5.29 15 25 H 0.41 15.60 8.79 -92.71 -0.82 14.78 15 26 H 0.28 14.91 8.29 -92.71 -0.77 14.14 15 27 H 0.14 4.34 8.06 -2.91 -0.02 4.32 15 Total: -1.00 -69.61 261.31 3.26 -66.35 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.39 Total: 24.68 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 2.92 Total: -10.93 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -1.38 Total: -80.88 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -0.06 Total: -39.11 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Atomic # 35 Polarization: -0.80 SS G_CDS: -0.65 Total: -1.45 kcal Total: -69.61 3.26 -66.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254991.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.576 kcal (2) G-P(sol) polarization free energy of solvation -69.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds