Wall clock time and date at job start Tue Mar 31 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34763 * 117.00121 * 2 1 4 4 O 1.21515 * 119.99653 * 0.02562 * 3 2 1 5 5 C 1.47377 * 119.99980 * 180.02562 * 3 2 1 6 6 C 1.39872 * 120.08119 * 0.02562 * 5 3 2 7 7 C 1.36559 * 120.07034 * 180.23317 * 6 5 3 8 8 C 1.39322 * 120.23147 * 359.49068 * 7 6 5 9 9 N 1.39083 * 119.91892 * 180.27972 * 8 7 6 10 10 C 1.34770 * 119.99609 * 213.87267 * 9 8 7 11 11 O 1.21723 * 120.00655 * 5.28176 * 10 9 8 12 12 C 1.46203 * 119.99976 * 185.27870 * 10 9 8 13 13 H 1.08003 * 119.99630 * 359.97438 * 12 10 9 14 14 C 1.40119 * 120.00352 * 179.97438 * 12 10 9 15 15 N 1.30634 * 119.99933 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 120.00149 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47159 * 89.99985 * 16 14 12 18 18 H 1.48497 * 109.47140 * 210.00293 * 16 14 12 19 19 H 1.48505 * 109.46730 * 329.99928 * 16 14 12 20 20 C 1.39193 * 120.15673 * 0.50750 * 8 7 6 21 21 C 1.37842 * 119.93268 * 359.75378 * 20 8 7 22 22 Cl 1.73594 * 120.11915 * 179.97438 * 21 20 8 23 23 H 1.09000 * 109.47289 * 59.99272 * 1 2 3 24 24 H 1.08996 * 109.47493 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46888 * 299.99444 * 1 2 3 26 26 H 1.08000 * 119.96416 * 359.94863 * 6 5 3 27 27 H 1.07997 * 119.88212 * 179.74110 * 7 6 5 28 28 H 0.96999 * 120.00183 * 33.87029 * 9 8 7 29 29 H 0.97001 * 120.00134 * 180.02562 * 15 14 12 30 30 H 1.08007 * 120.03577 * 179.76465 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2007 0.0000 4 8 1.4020 2.2198 0.0005 5 6 3.5356 1.2778 -0.0006 6 6 4.2990 0.1058 -0.0017 7 6 5.6627 0.1775 0.0026 8 6 6.3001 1.4164 -0.0026 9 7 7.6894 1.4818 -0.0041 10 6 8.3174 2.4840 0.6421 11 8 7.6754 3.2764 1.3066 12 6 9.7699 2.6193 0.5451 13 1 10.3396 1.9159 -0.0440 14 6 10.4229 3.6615 1.2165 15 7 9.7338 4.5120 1.9295 16 14 12.2787 3.8348 1.0920 17 1 12.6184 4.7004 -0.0657 18 1 12.8034 4.4472 2.3389 19 1 12.8894 2.4943 0.9039 20 6 5.5497 2.5888 -0.0016 21 6 4.1728 2.5242 -0.0005 22 17 3.2323 3.9833 0.0014 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 3.8095 -0.8568 -0.0012 27 1 6.2492 -0.7293 0.0060 28 1 8.2062 0.8061 -0.4702 29 1 10.1858 5.2337 2.3940 30 1 6.0459 3.5482 -0.0018 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083393795.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:53 Heat of formation + Delta-G solvation = -118.160138 kcal Electronic energy + Delta-G solvation = -19132.725822 eV Core-core repulsion = 15725.426024 eV Total energy + Delta-G solvation = -3407.299799 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.63286 -40.75127 -38.90729 -37.57401 -37.23292 -35.41500 -34.57935 -32.01439 -31.34732 -28.86923 -28.03922 -24.97280 -23.95138 -22.38767 -21.68021 -19.66160 -19.02811 -18.28443 -17.83278 -17.56037 -17.31972 -16.35532 -15.91304 -15.81796 -15.40220 -14.94095 -14.67265 -14.57320 -14.32781 -13.83060 -13.73296 -13.18620 -13.05793 -12.86247 -12.75161 -12.67213 -12.49937 -12.29840 -12.04103 -11.72739 -11.17830 -11.03837 -10.92340 -10.10518 -9.81204 -9.04960 -8.39774 -6.97903 -0.43710 0.23787 1.03535 1.38515 1.41896 1.50259 1.58306 1.71242 2.19511 2.32466 2.66761 2.79094 3.52205 3.67260 3.87878 4.12959 4.21219 4.33064 4.39267 4.39978 4.72485 4.77449 4.97728 5.10429 5.23623 5.26337 5.34163 5.49904 5.72565 6.10864 6.13921 6.74639 6.75594 7.22883 8.27556 8.53053 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.036353 B = 0.004021 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.046920 B = 6961.821084 C = 7590.969478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.352 6.352 3 C 0.512 3.488 4 O -0.521 6.521 5 C -0.184 4.184 6 C -0.006 4.006 7 C -0.166 4.166 8 C 0.222 3.778 9 N -0.681 5.681 10 C 0.524 3.476 11 O -0.601 6.601 12 C -0.558 4.558 13 H 0.099 0.901 14 C 0.029 3.971 15 N -0.811 5.811 16 Si 1.001 2.999 17 H -0.263 1.263 18 H -0.276 1.276 19 H -0.244 1.244 20 C -0.165 4.165 21 C 0.036 3.964 22 Cl -0.053 7.053 23 H 0.061 0.939 24 H 0.138 0.862 25 H 0.058 0.942 26 H 0.184 0.816 27 H 0.175 0.825 28 H 0.418 0.582 29 H 0.278 0.722 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.526 -12.580 -5.646 16.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.269 6.269 3 C 0.358 3.642 4 O -0.412 6.412 5 C -0.187 4.187 6 C -0.025 4.025 7 C -0.187 4.187 8 C 0.121 3.879 9 N -0.325 5.325 10 C 0.332 3.668 11 O -0.487 6.487 12 C -0.593 4.593 13 H 0.117 0.883 14 C -0.188 4.188 15 N -0.439 5.439 16 Si 0.820 3.180 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.167 1.167 20 C -0.187 4.187 21 C 0.008 3.992 22 Cl -0.023 7.023 23 H 0.080 0.920 24 H 0.156 0.844 25 H 0.077 0.923 26 H 0.202 0.798 27 H 0.192 0.808 28 H 0.255 0.745 29 H 0.088 0.912 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.190 -11.414 -5.058 16.115 hybrid contribution 0.637 0.813 -0.009 1.033 sum -9.554 -10.601 -5.068 15.144 Atomic orbital electron populations 1.23565 0.74338 1.05867 1.02420 1.86510 1.25089 1.31078 1.84224 1.20901 0.88646 0.81926 0.72759 1.90898 1.67167 1.36458 1.46657 1.18822 0.90210 0.92985 1.16684 1.21223 0.92597 0.97698 0.90967 1.21099 0.95149 0.96288 1.06172 1.18346 0.84989 0.93540 0.91039 1.43801 1.03005 1.31047 1.54624 1.18832 0.89659 0.79557 0.78786 1.90646 1.68228 1.44870 1.44907 1.21432 0.90267 1.14828 1.32793 0.88253 1.27014 1.06208 0.93485 0.92061 1.70140 1.39788 1.11647 1.22358 0.84958 0.74495 0.80139 0.78429 1.18783 1.20072 1.16684 1.20918 0.91317 0.99862 1.06586 1.20855 0.91198 0.87525 0.99664 1.98369 1.72222 1.35550 1.96208 0.92017 0.84395 0.92292 0.79831 0.80754 0.74462 0.91189 0.86678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.57 113.37 1.20 1.70 16 2 O -0.35 -8.12 9.80 -56.74 -0.56 -8.68 16 3 C 0.51 15.60 7.88 70.23 0.55 16.15 16 4 O -0.52 -18.49 13.75 19.79 0.27 -18.22 16 5 C -0.18 -5.88 5.88 -20.05 -0.12 -6.00 16 6 C -0.01 -0.15 9.55 22.27 0.21 0.06 16 7 C -0.17 -4.46 9.89 22.14 0.22 -4.25 16 8 C 0.22 8.40 6.27 38.48 0.24 8.64 16 9 N -0.68 -27.66 5.30 -307.52 -1.63 -29.29 16 10 C 0.52 27.99 7.46 86.31 0.64 28.63 16 11 O -0.60 -37.65 12.69 -4.42 -0.06 -37.71 16 12 C -0.56 -28.86 9.54 24.80 0.24 -28.63 16 13 H 0.10 4.45 7.85 -2.91 -0.02 4.43 16 14 C 0.03 1.52 5.50 85.33 0.47 1.99 16 15 N -0.81 -47.06 11.82 21.85 0.26 -46.80 16 16 Si 1.00 38.04 29.56 68.60 2.03 40.06 16 17 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 18 H -0.28 -10.30 7.11 99.48 0.71 -9.60 16 19 H -0.24 -8.44 7.11 99.48 0.71 -7.73 16 20 C -0.16 -7.12 8.41 22.41 0.19 -6.93 16 21 C 0.04 1.38 6.35 22.60 0.14 1.52 16 22 Cl -0.05 -2.07 26.02 -2.72 -0.07 -2.14 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.18 3.01 7.60 -2.91 -0.02 2.99 16 27 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 28 H 0.42 13.35 8.79 -92.71 -0.82 12.54 16 29 H 0.28 14.68 8.29 -92.71 -0.77 13.91 16 30 H 0.12 5.96 6.42 -2.91 -0.02 5.94 16 Total: -1.00 -74.64 288.99 4.63 -70.01 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.39 Total: 19.86 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 3.99 Total: 12.90 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -1.37 Total: -76.09 kcal Atomic # 8 Polarization: -64.26 SS G_CDS: -0.34 Total: -64.60 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.06 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.07 Total: -2.14 kcal Total: -74.64 4.63 -70.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083393795.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.147 kcal (2) G-P(sol) polarization free energy of solvation -74.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds