Wall clock time and date at job start Tue Mar 31 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34711 * 116.99910 * 2 1 4 4 O 1.21478 * 120.00434 * 0.02562 * 3 2 1 5 5 C 1.47666 * 120.00167 * 179.97438 * 3 2 1 6 6 C 1.39546 * 120.11715 * 0.02562 * 5 3 2 7 7 C 1.38712 * 119.77033 * 179.97438 * 6 5 3 8 8 N 1.39581 * 119.98965 * 180.02562 * 7 6 5 9 9 C 1.34778 * 120.00212 * 144.86898 * 8 7 6 10 10 O 1.21754 * 119.99682 * 4.59377 * 9 8 7 11 11 C 1.46158 * 120.00371 * 184.59294 * 9 8 7 12 12 H 1.07997 * 120.00028 * 0.02562 * 11 9 8 13 13 C 1.40120 * 119.99799 * 179.97438 * 11 9 8 14 14 N 1.30637 * 120.00439 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 120.00047 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47352 * 90.00000 * 15 13 11 17 17 H 1.48497 * 109.47539 * 210.00689 * 15 13 11 18 18 H 1.48501 * 109.47099 * 330.00154 * 15 13 11 19 19 C 1.39175 * 120.01637 * 0.02899 * 7 6 5 20 20 C 1.38103 * 120.24792 * 359.94808 * 19 7 6 21 21 C 1.38234 * 120.22950 * 0.05268 * 20 19 7 22 22 Cl 1.73601 * 120.01052 * 180.25116 * 21 20 19 23 23 H 1.08998 * 109.47684 * 300.00416 * 1 2 3 24 24 H 1.09008 * 109.47326 * 60.00240 * 1 2 3 25 25 H 1.09001 * 109.47420 * 179.97438 * 1 2 3 26 26 H 1.08003 * 120.11610 * 359.95905 * 6 5 3 27 27 H 0.97006 * 120.00385 * 324.87293 * 8 7 6 28 28 H 0.97001 * 120.00403 * 180.02562 * 14 13 11 29 29 H 1.08000 * 119.87996 * 180.02562 * 19 7 6 30 30 H 1.08007 * 119.88570 * 180.02562 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2191 0.0005 5 6 3.5382 1.2776 0.0006 6 6 4.3006 0.1089 0.0006 7 6 5.6854 0.1899 0.0006 8 7 6.4525 -0.9762 0.0000 9 6 7.6204 -1.0143 -0.6717 10 8 8.0473 -0.0080 -1.2079 11 6 8.3744 -2.2635 -0.7563 12 1 7.9956 -3.1561 -0.2810 13 6 9.5883 -2.3031 -1.4551 14 7 10.0463 -1.2234 -2.0306 15 14 10.5516 -3.8997 -1.5640 16 1 10.1205 -4.6571 -2.7664 17 1 12.0020 -3.5970 -1.6634 18 1 10.2983 -4.7146 -0.3486 19 6 6.3100 1.4337 0.0012 20 6 5.5561 2.5908 0.0007 21 6 4.1755 2.5219 0.0007 22 17 3.2334 3.9800 -0.0065 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 3.8143 -0.8554 0.0008 27 1 6.1451 -1.7592 0.4831 28 1 10.8865 -1.2509 -2.5147 29 1 7.3883 1.4942 0.0008 30 1 6.0470 3.5529 0.0008 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083393808.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:56 Heat of formation + Delta-G solvation = -115.620075 kcal Electronic energy + Delta-G solvation = -19131.837402 eV Core-core repulsion = 15724.647748 eV Total energy + Delta-G solvation = -3407.189653 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.68586 -40.69210 -38.91555 -37.53949 -37.24432 -35.26272 -34.51554 -32.69176 -30.66852 -28.62040 -28.19458 -25.29211 -23.78055 -22.85876 -21.28633 -19.56307 -19.07403 -18.20541 -17.66443 -17.40580 -17.36874 -16.74199 -16.30960 -15.84065 -15.18557 -14.91587 -14.61573 -14.58572 -14.37608 -13.84845 -13.49488 -13.19560 -13.00399 -12.87879 -12.72235 -12.70669 -12.47910 -12.45135 -12.02061 -11.76501 -11.08873 -11.01037 -10.78676 -10.27153 -9.85123 -8.92792 -8.36447 -6.93603 -0.47021 0.12483 1.07742 1.40627 1.43610 1.46967 1.59427 1.63604 2.21775 2.32912 2.63064 2.80730 3.52504 3.62136 3.74582 4.15295 4.17079 4.33964 4.35330 4.38442 4.70270 4.72649 4.79503 5.07489 5.23550 5.27286 5.30249 5.44415 5.77325 6.13727 6.20150 6.65245 6.79583 7.28739 8.32176 8.56330 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.026864 B = 0.004118 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.048759 B = 6797.250945 C = 7707.483961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.511 3.489 4 O -0.506 6.506 5 C -0.110 4.110 6 C -0.088 4.088 7 C 0.161 3.839 8 N -0.687 5.687 9 C 0.529 3.471 10 O -0.603 6.603 11 C -0.561 4.561 12 H 0.096 0.904 13 C 0.033 3.967 14 N -0.811 5.811 15 Si 0.998 3.002 16 H -0.263 1.263 17 H -0.275 1.275 18 H -0.247 1.247 19 C -0.098 4.098 20 C -0.095 4.095 21 C -0.022 4.022 22 Cl -0.043 7.043 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.134 0.866 26 H 0.166 0.834 27 H 0.413 0.587 28 H 0.278 0.722 29 H 0.129 0.871 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.558 -0.190 5.338 14.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.273 6.273 3 C 0.356 3.644 4 O -0.395 6.395 5 C -0.112 4.112 6 C -0.109 4.109 7 C 0.062 3.938 8 N -0.332 5.332 9 C 0.337 3.663 10 O -0.489 6.489 11 C -0.596 4.596 12 H 0.114 0.886 13 C -0.184 4.184 14 N -0.439 5.439 15 Si 0.817 3.183 16 H -0.188 1.188 17 H -0.200 1.200 18 H -0.170 1.170 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.050 4.050 22 Cl -0.014 7.014 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.152 0.848 26 H 0.184 0.816 27 H 0.250 0.750 28 H 0.088 0.912 29 H 0.147 0.853 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.389 0.946 4.837 14.268 hybrid contribution 0.269 -0.481 -0.042 0.553 sum -13.121 0.465 4.795 13.977 Atomic orbital electron populations 1.23604 0.73964 1.05902 1.02770 1.86540 1.25463 1.31363 1.83921 1.20889 0.88470 0.82016 0.73010 1.90888 1.66828 1.36028 1.45786 1.18658 0.89976 0.92734 1.09875 1.21266 0.90919 0.98806 0.99917 1.18089 0.90622 0.88051 0.97010 1.43711 1.22681 1.12930 1.53851 1.18736 0.79380 0.90363 0.77837 1.90594 1.69497 1.37501 1.51275 1.21389 1.06343 0.95672 1.36209 0.88617 1.26936 0.97971 1.01335 0.92185 1.70122 1.18469 1.30985 1.24359 0.84997 0.76677 0.76457 0.80135 1.18778 1.19985 1.17017 1.21624 1.01365 0.91268 0.97714 1.21006 0.90569 0.99750 1.00134 1.20907 0.91967 0.87180 1.04963 1.98370 1.72324 1.34180 1.96482 0.91512 0.91852 0.84798 0.81620 0.75048 0.91208 0.85336 0.82468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.69 16 2 O -0.36 -8.65 9.81 -56.21 -0.55 -9.20 16 3 C 0.51 15.06 7.89 70.31 0.55 15.61 16 4 O -0.51 -16.25 13.75 19.91 0.27 -15.98 16 5 C -0.11 -3.46 5.87 -20.09 -0.12 -3.58 16 6 C -0.09 -2.74 9.54 22.70 0.22 -2.53 16 7 C 0.16 6.10 6.29 38.25 0.24 6.34 16 8 N -0.69 -28.12 5.31 -307.62 -1.63 -29.75 16 9 C 0.53 27.90 7.58 86.30 0.65 28.55 16 10 O -0.60 -36.46 12.44 -4.52 -0.06 -36.52 16 11 C -0.56 -28.87 9.53 24.78 0.24 -28.63 16 12 H 0.10 4.32 7.85 -2.91 -0.02 4.30 16 13 C 0.03 1.68 5.50 85.33 0.47 2.15 16 14 N -0.81 -46.12 11.82 21.85 0.26 -45.86 16 15 Si 1.00 37.71 29.56 68.60 2.03 39.74 16 16 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 17 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 18 H -0.25 -8.61 7.11 99.48 0.71 -7.90 16 19 C -0.10 -3.87 8.68 22.46 0.20 -3.68 16 20 C -0.10 -3.16 9.81 22.24 0.22 -2.94 16 21 C -0.02 -0.70 6.36 22.65 0.14 -0.56 16 22 Cl -0.04 -1.29 26.01 -2.72 -0.07 -1.36 16 23 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.17 4.31 7.61 -2.91 -0.02 4.29 16 27 H 0.41 13.81 8.80 -92.70 -0.82 12.99 16 28 H 0.28 14.35 8.29 -92.71 -0.77 13.59 16 29 H 0.13 5.92 6.21 -2.91 -0.02 5.90 16 30 H 0.16 4.44 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -68.60 288.86 4.65 -63.96 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.39 Total: 22.54 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 4.01 Total: 12.44 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -1.38 Total: -75.62 kcal Atomic # 8 Polarization: -61.36 SS G_CDS: -0.33 Total: -61.69 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.07 Total: -1.36 kcal Total: -68.60 4.65 -63.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083393808.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.663 kcal (2) G-P(sol) polarization free energy of solvation -68.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds