Wall clock time and date at job start Tue Mar 31 2020 05:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37962 * 120.06814 * 2 1 4 4 C 1.38340 * 120.16129 * 180.25509 * 3 2 1 5 5 C 1.38484 * 120.29660 * 359.45119 * 4 3 2 6 6 Br 1.89104 * 119.93416 * 180.25356 * 5 4 3 7 7 C 1.38007 * 120.13045 * 0.27386 * 5 4 3 8 8 C 1.39633 * 120.06581 * 179.71117 * 2 1 3 9 9 C 1.47724 * 120.14691 * 359.97438 * 8 2 1 10 10 O 1.21597 * 120.00135 * 353.76434 * 9 8 2 11 11 N 1.34777 * 120.00067 * 173.77218 * 9 8 2 12 12 C 1.36870 * 119.99837 * 179.97438 * 11 9 8 13 13 H 1.07997 * 120.00457 * 359.97438 * 12 11 9 14 14 C 1.39057 * 120.00011 * 179.97438 * 12 11 9 15 15 N 1.31367 * 119.99535 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00161 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47306 * 59.99838 * 16 14 12 18 18 H 1.48503 * 109.47406 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47273 * 300.00004 * 16 14 12 20 20 H 1.08998 * 109.46563 * 263.69652 * 1 2 3 21 21 H 1.08997 * 109.47310 * 23.69782 * 1 2 3 22 22 H 1.09005 * 109.47163 * 143.70152 * 1 2 3 23 23 H 1.07995 * 119.91939 * 359.97438 * 3 2 1 24 24 H 1.08000 * 119.84729 * 179.72827 * 4 3 2 25 25 H 1.08003 * 120.08197 * 179.97438 * 7 5 4 26 26 H 0.96999 * 120.00082 * 359.97438 * 11 9 8 27 27 H 0.96996 * 119.99323 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1940 0.0000 4 6 3.5816 1.1962 -0.0053 5 6 4.2822 0.0017 0.0008 6 35 6.1732 0.0168 0.0006 7 6 3.6031 -1.1997 0.0065 8 6 2.2066 -1.2084 0.0061 9 6 1.4727 -2.4905 0.0131 10 8 0.2622 -2.4975 0.1280 11 7 2.1449 -3.6524 -0.1076 12 6 1.4649 -4.8403 -0.1006 13 1 0.3899 -4.8466 0.0022 14 6 2.1584 -6.0391 -0.2257 15 7 3.4661 -6.0315 -0.3502 16 14 1.2305 -7.6602 -0.2154 17 1 0.2647 -7.6851 -1.3431 18 1 2.1923 -8.7821 -0.3632 19 1 0.4968 -7.8025 1.0679 20 1 -0.3632 -0.1128 1.0215 21 1 -0.3634 0.9410 -0.4130 22 1 -0.3634 -0.8283 -0.6084 23 1 1.6581 2.1291 -0.0004 24 1 4.1176 2.1338 -0.0097 25 1 4.1503 -2.1309 0.0108 26 1 3.1105 -3.6468 -0.1995 27 1 3.9497 -6.8677 -0.4378 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083688885.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:19 Heat of formation + Delta-G solvation = -16.258132 kcal Electronic energy + Delta-G solvation = -14247.534387 eV Core-core repulsion = 11630.225705 eV Total energy + Delta-G solvation = -2617.308682 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.59410 -37.45461 -34.35176 -32.83489 -31.74757 -30.57749 -30.02794 -26.33140 -25.07861 -23.15624 -21.14903 -19.48807 -18.09213 -16.65895 -15.61325 -15.09151 -14.77260 -14.19597 -14.09304 -13.85544 -12.95142 -12.77326 -12.70349 -12.21385 -11.84514 -11.53705 -11.40022 -11.15723 -10.89115 -10.51658 -10.41225 -10.33396 -10.14179 -9.66216 -8.71863 -8.37035 -8.27874 -8.09620 -6.61239 -3.94193 1.18905 1.41637 1.79611 3.11911 3.18162 3.22025 3.50802 4.04015 4.33923 4.75941 4.97413 5.12370 5.21832 5.33231 5.50083 5.82881 5.88347 5.96442 6.24120 6.26896 6.39536 6.43080 6.63333 6.93882 7.12526 7.37779 7.89517 8.43752 8.99675 9.34767 9.89866 10.55183 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.019576 B = 0.005923 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.986177 B = 4726.178576 C = 6137.248312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.026 4.026 3 C -0.127 4.127 4 C -0.090 4.090 5 C -0.100 4.100 6 Br -0.062 7.062 7 C -0.073 4.073 8 C -0.093 4.093 9 C 0.463 3.537 10 O -0.589 6.589 11 N -0.539 5.539 12 C -0.296 4.296 13 H 0.109 0.891 14 C 0.025 3.975 15 N -0.886 5.886 16 Si 0.936 3.064 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.271 1.271 20 H 0.072 0.928 21 H 0.048 0.952 22 H 0.103 0.897 23 H 0.130 0.870 24 H 0.128 0.872 25 H 0.136 0.864 26 H 0.393 0.607 27 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.147 12.588 0.171 13.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.028 4.028 3 C -0.146 4.146 4 C -0.111 4.111 5 C -0.179 4.179 6 Br 0.023 6.977 7 C -0.094 4.094 8 C -0.097 4.097 9 C 0.251 3.749 10 O -0.476 6.476 11 N -0.173 5.173 12 C -0.426 4.426 13 H 0.127 0.873 14 C -0.179 4.179 15 N -0.525 5.525 16 Si 0.762 3.238 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.196 1.196 20 H 0.091 0.909 21 H 0.067 0.933 22 H 0.122 0.878 23 H 0.148 0.852 24 H 0.146 0.854 25 H 0.154 0.846 26 H 0.228 0.772 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.213 12.354 0.222 13.411 hybrid contribution 0.047 -0.808 -0.031 0.810 sum 5.261 11.546 0.192 12.690 Atomic orbital electron populations 1.21055 0.89886 1.02539 1.03756 1.20163 0.97232 0.91349 0.94066 1.20959 0.93270 0.97703 1.02640 1.21053 0.94245 0.96361 0.99416 1.21557 0.89646 0.96156 1.10529 1.96650 1.03838 1.99314 1.97919 1.21366 0.93738 0.97058 0.97220 1.20240 0.92390 0.95177 1.01916 1.17573 0.87460 0.83028 0.86803 1.90544 1.13314 1.86354 1.57422 1.41926 1.09974 1.04927 1.60453 1.19801 0.94246 0.82147 1.46357 0.87324 1.25415 0.95697 1.00207 0.96604 1.69586 1.06513 1.29248 1.47183 0.85823 0.78820 0.79807 0.79308 1.19602 1.20737 1.19596 0.90922 0.93347 0.87832 0.85241 0.85409 0.84633 0.77165 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 8.73 36.01 0.31 -1.62 15 2 C -0.03 -0.45 5.92 -104.20 -0.62 -1.07 15 3 C -0.13 -1.79 9.66 -39.64 -0.38 -2.17 15 4 C -0.09 -1.25 9.78 -39.45 -0.39 -1.63 15 5 C -0.10 -1.56 6.22 -39.58 -0.25 -1.81 15 6 Br -0.06 -0.86 33.69 -68.01 -2.29 -3.15 15 7 C -0.07 -1.31 9.26 -39.14 -0.36 -1.67 15 8 C -0.09 -1.85 5.87 -104.97 -0.62 -2.46 15 9 C 0.46 11.15 7.65 -12.38 -0.09 11.06 15 10 O -0.59 -15.40 12.92 5.28 0.07 -15.33 15 11 N -0.54 -13.67 5.23 -11.87 -0.06 -13.74 15 12 C -0.30 -8.02 9.68 -15.00 -0.15 -8.17 15 13 H 0.11 3.04 7.15 -52.49 -0.38 2.66 15 14 C 0.02 0.64 5.50 -17.45 -0.10 0.55 15 15 N -0.89 -23.35 13.05 55.50 0.72 -22.63 15 16 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 15 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 20 H 0.07 1.22 8.14 -51.93 -0.42 0.79 15 21 H 0.05 0.64 8.04 -51.93 -0.42 0.22 15 22 H 0.10 2.03 5.86 -51.93 -0.30 1.73 15 23 H 0.13 1.42 8.06 -52.49 -0.42 1.00 15 24 H 0.13 1.42 8.06 -52.49 -0.42 1.00 15 25 H 0.14 2.49 6.45 -52.48 -0.34 2.15 15 26 H 0.39 9.59 5.97 -40.82 -0.24 9.35 15 27 H 0.28 6.89 8.31 -40.82 -0.34 6.55 15 LS Contribution 260.07 15.07 3.92 3.92 Total: -1.00 -28.26 260.07 -7.38 -35.64 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -2.08 Total: 9.05 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -2.63 Total: -9.00 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.66 Total: -36.37 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.07 Total: -15.33 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 35 Polarization: -0.86 SS G_CDS: -2.29 Total: -3.15 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.26 -7.38 -35.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083688885.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.383 kcal (2) G-P(sol) polarization free energy of solvation -28.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds