Wall clock time and date at job start Tue Mar 31 2020 05:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37962 * 120.06814 * 2 1 4 4 C 1.38340 * 120.16129 * 180.25509 * 3 2 1 5 5 C 1.38484 * 120.29660 * 359.45119 * 4 3 2 6 6 Br 1.89104 * 119.93416 * 180.25356 * 5 4 3 7 7 C 1.38007 * 120.13045 * 0.27386 * 5 4 3 8 8 C 1.39633 * 120.06581 * 179.71117 * 2 1 3 9 9 C 1.47724 * 120.14691 * 359.97438 * 8 2 1 10 10 O 1.21597 * 120.00135 * 353.76434 * 9 8 2 11 11 N 1.34777 * 120.00067 * 173.77218 * 9 8 2 12 12 C 1.36870 * 119.99837 * 179.97438 * 11 9 8 13 13 H 1.07997 * 120.00457 * 359.97438 * 12 11 9 14 14 C 1.39057 * 120.00011 * 179.97438 * 12 11 9 15 15 N 1.31367 * 119.99535 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00161 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47306 * 59.99838 * 16 14 12 18 18 H 1.48503 * 109.47406 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47273 * 300.00004 * 16 14 12 20 20 H 1.08998 * 109.46563 * 263.69652 * 1 2 3 21 21 H 1.08997 * 109.47310 * 23.69782 * 1 2 3 22 22 H 1.09005 * 109.47163 * 143.70152 * 1 2 3 23 23 H 1.07995 * 119.91939 * 359.97438 * 3 2 1 24 24 H 1.08000 * 119.84729 * 179.72827 * 4 3 2 25 25 H 1.08003 * 120.08197 * 179.97438 * 7 5 4 26 26 H 0.96999 * 120.00082 * 359.97438 * 11 9 8 27 27 H 0.96996 * 119.99323 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1940 0.0000 4 6 3.5816 1.1962 -0.0053 5 6 4.2822 0.0017 0.0008 6 35 6.1732 0.0168 0.0006 7 6 3.6031 -1.1997 0.0065 8 6 2.2066 -1.2084 0.0061 9 6 1.4727 -2.4905 0.0131 10 8 0.2622 -2.4975 0.1280 11 7 2.1449 -3.6524 -0.1076 12 6 1.4649 -4.8403 -0.1006 13 1 0.3899 -4.8466 0.0022 14 6 2.1584 -6.0391 -0.2257 15 7 3.4661 -6.0315 -0.3502 16 14 1.2305 -7.6602 -0.2154 17 1 0.2647 -7.6851 -1.3431 18 1 2.1923 -8.7821 -0.3632 19 1 0.4968 -7.8025 1.0679 20 1 -0.3632 -0.1128 1.0215 21 1 -0.3634 0.9410 -0.4130 22 1 -0.3634 -0.8283 -0.6084 23 1 1.6581 2.1291 -0.0004 24 1 4.1176 2.1338 -0.0097 25 1 4.1503 -2.1309 0.0108 26 1 3.1105 -3.6468 -0.1995 27 1 3.9497 -6.8677 -0.4378 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083688885.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:19 Heat of formation + Delta-G solvation = -33.173101 kcal Electronic energy + Delta-G solvation = -14248.267875 eV Core-core repulsion = 11630.225705 eV Total energy + Delta-G solvation = -2618.042170 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.13100 -39.12856 -36.24691 -34.22525 -33.54867 -32.05936 -31.28595 -27.82113 -26.81623 -24.62218 -22.53864 -21.20163 -19.98737 -18.29823 -17.09421 -16.52419 -16.47210 -15.85913 -15.61315 -15.57840 -14.44289 -14.33947 -14.11429 -13.61339 -13.48842 -13.04531 -12.91283 -12.74969 -12.48636 -12.14910 -12.08689 -11.63255 -11.56527 -11.29177 -10.23691 -10.13040 -10.02017 -9.54146 -8.56233 -6.01310 -0.15757 0.12043 0.58248 1.40316 1.40453 1.51973 1.98904 2.25087 2.69607 3.06123 3.25455 3.75595 3.86163 3.97960 4.21016 4.42743 4.55725 4.71034 4.86838 4.91020 5.07068 5.15159 5.31323 5.33294 5.60030 5.78985 5.95274 6.48189 7.01082 7.41262 7.97226 8.60844 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.019576 B = 0.005923 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.986177 B = 4726.178576 C = 6137.248312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.034 4.034 3 C -0.111 4.111 4 C -0.068 4.068 5 C -0.108 4.108 6 Br -0.042 7.042 7 C -0.077 4.077 8 C -0.127 4.127 9 C 0.464 3.536 10 O -0.615 6.615 11 N -0.555 5.555 12 C -0.336 4.336 13 H 0.088 0.912 14 C -0.010 4.010 15 N -0.913 5.913 16 Si 1.000 3.000 17 H -0.269 1.269 18 H -0.269 1.269 19 H -0.269 1.269 20 H 0.066 0.934 21 H 0.090 0.910 22 H 0.066 0.934 23 H 0.175 0.825 24 H 0.169 0.831 25 H 0.122 0.878 26 H 0.394 0.606 27 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.811 14.986 0.152 16.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.036 4.036 3 C -0.129 4.129 4 C -0.087 4.087 5 C -0.187 4.187 6 Br 0.043 6.957 7 C -0.098 4.098 8 C -0.131 4.131 9 C 0.254 3.746 10 O -0.505 6.505 11 N -0.190 5.190 12 C -0.465 4.465 13 H 0.106 0.894 14 C -0.212 4.212 15 N -0.552 5.552 16 Si 0.822 3.178 17 H -0.194 1.194 18 H -0.193 1.193 19 H -0.194 1.194 20 H 0.085 0.915 21 H 0.108 0.892 22 H 0.085 0.915 23 H 0.193 0.807 24 H 0.186 0.814 25 H 0.139 0.861 26 H 0.229 0.771 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.896 14.775 0.203 15.909 hybrid contribution -0.100 -1.287 -0.017 1.291 sum 5.795 13.487 0.186 14.681 Atomic orbital electron populations 1.20960 0.89732 1.03213 1.02907 1.20413 0.97613 0.91635 0.93906 1.21391 0.93493 0.97888 1.00150 1.21584 0.94340 0.97034 0.95792 1.21747 0.90954 0.95922 1.10127 1.96676 1.01917 1.99272 1.97843 1.21251 0.93057 0.97840 0.97689 1.19988 0.93204 0.93972 1.05968 1.18367 0.87448 0.84269 0.84545 1.90517 1.14759 1.87295 1.57879 1.41945 1.09943 1.05052 1.62057 1.19777 0.93689 0.83715 1.49331 0.89405 1.26209 0.96540 1.02841 0.95566 1.69653 1.07487 1.30200 1.47871 0.84893 0.77777 0.75922 0.79203 1.19355 1.19326 1.19376 0.91549 0.89168 0.91543 0.80721 0.81401 0.86056 0.77050 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.60 8.73 71.24 0.62 -2.98 15 2 C -0.03 -1.12 5.92 -19.59 -0.12 -1.23 15 3 C -0.11 -2.62 9.66 22.23 0.21 -2.40 15 4 C -0.07 -1.55 9.78 22.35 0.22 -1.33 15 5 C -0.11 -3.12 6.22 22.27 0.14 -2.98 15 6 Br -0.04 -1.07 33.69 -20.37 -0.69 -1.76 15 7 C -0.08 -2.78 9.26 22.56 0.21 -2.57 15 8 C -0.13 -5.12 5.87 -20.09 -0.12 -5.24 15 9 C 0.46 23.48 7.65 86.75 0.66 24.14 15 10 O -0.62 -33.92 12.92 -4.02 -0.05 -33.97 15 11 N -0.56 -29.79 5.23 -309.72 -1.62 -31.41 15 12 C -0.34 -19.19 9.68 84.10 0.81 -18.37 15 13 H 0.09 5.24 7.15 -2.91 -0.02 5.22 15 14 C -0.01 -0.55 5.50 84.96 0.47 -0.09 15 15 N -0.91 -49.40 13.05 21.68 0.28 -49.12 15 16 Si 1.00 42.39 29.55 68.60 2.03 44.42 15 17 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 18 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 19 H -0.27 -11.21 7.11 99.48 0.71 -10.51 15 20 H 0.07 2.19 8.14 -2.39 -0.02 2.17 15 21 H 0.09 2.09 8.04 -2.39 -0.02 2.07 15 22 H 0.07 2.66 5.86 -2.38 -0.01 2.65 15 23 H 0.18 2.63 8.06 -2.91 -0.02 2.60 15 24 H 0.17 2.62 8.06 -2.91 -0.02 2.59 15 25 H 0.12 4.63 6.45 -2.91 -0.02 4.62 15 26 H 0.39 20.41 5.97 -92.71 -0.55 19.85 15 27 H 0.28 14.21 8.31 -92.71 -0.77 13.44 15 Total: -1.00 -64.40 260.07 3.72 -60.68 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.66 Total: 24.21 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 3.11 Total: -13.06 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -1.34 Total: -80.52 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.05 Total: -33.97 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 35 Polarization: -1.07 SS G_CDS: -0.69 Total: -1.76 kcal Total: -64.40 3.72 -60.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083688885.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.506 kcal (2) G-P(sol) polarization free energy of solvation -64.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds