Wall clock time and date at job start Tue Mar 31 2020 05:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38054 * 120.08105 * 2 1 4 4 Br 1.89093 * 119.93562 * 359.97438 * 3 2 1 5 5 C 1.38438 * 120.12631 * 180.25676 * 3 2 1 6 6 C 1.38384 * 120.29605 * 359.44716 * 5 3 2 7 7 C 1.37916 * 120.16481 * 0.55342 * 6 5 3 8 8 C 1.39610 * 120.08045 * 179.97438 * 2 1 3 9 9 C 1.47726 * 120.14897 * 0.03874 * 8 2 1 10 10 O 1.21597 * 120.00076 * 6.18640 * 9 8 2 11 11 N 1.34775 * 120.00399 * 186.19117 * 9 8 2 12 12 C 1.36864 * 120.00396 * 179.97438 * 11 9 8 13 13 H 1.08002 * 120.00303 * 359.97438 * 12 11 9 14 14 C 1.39051 * 120.00460 * 179.97438 * 12 11 9 15 15 N 1.31362 * 119.99548 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00321 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46967 * 60.00229 * 16 14 12 18 18 H 1.48496 * 109.47351 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47184 * 300.00172 * 16 14 12 20 20 H 1.08993 * 109.47384 * 96.54412 * 1 2 3 21 21 H 1.09005 * 109.47134 * 216.54673 * 1 2 3 22 22 H 1.08996 * 109.47229 * 336.54140 * 1 2 3 23 23 H 1.08007 * 119.85055 * 179.73038 * 5 3 2 24 24 H 1.08002 * 119.91730 * 180.28121 * 6 5 3 25 25 H 1.07999 * 120.06924 * 179.70173 * 7 6 5 26 26 H 0.97006 * 119.99936 * 359.97438 * 11 9 8 27 27 H 0.97003 * 119.99822 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1946 0.0000 4 35 1.2540 2.8325 -0.0007 5 6 3.5833 1.1957 -0.0054 6 6 4.2824 0.0014 0.0008 7 6 3.6035 -1.1990 0.0008 8 6 2.2068 -1.2081 0.0005 9 6 1.4733 -2.4904 0.0002 10 8 0.2627 -2.4983 -0.1139 11 7 2.1457 -3.6515 0.1266 12 6 1.4661 -4.8395 0.1269 13 1 0.3908 -4.8465 0.0262 14 6 2.1600 -6.0375 0.2568 15 7 3.4678 -6.0290 0.3797 16 14 1.2324 -7.6589 0.2564 17 1 0.4963 -7.8077 -1.0248 18 1 2.1948 -8.7798 0.4068 19 1 0.2688 -7.6782 1.3861 20 1 -0.3634 -0.1171 -1.0209 21 1 -0.3634 -0.8256 0.6120 22 1 -0.3633 0.9427 0.4091 23 1 4.1202 2.1329 -0.0098 24 1 5.3624 0.0095 0.0011 25 1 4.1506 -2.1302 0.0007 26 1 3.1115 -3.6453 0.2174 27 1 3.9519 -6.8647 0.4699 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083890984.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:45 Heat of formation + Delta-G solvation = -13.985954 kcal Electronic energy + Delta-G solvation = -14274.805392 eV Core-core repulsion = 11657.595239 eV Total energy + Delta-G solvation = -2617.210153 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.59770 -37.46183 -34.32898 -32.79324 -31.70606 -31.28586 -29.17972 -26.70932 -25.12538 -22.93550 -21.08866 -19.55562 -18.14789 -16.65005 -15.59233 -15.12717 -14.78860 -14.21199 -14.11092 -13.87664 -12.95648 -12.87645 -12.69591 -11.86845 -11.80306 -11.54526 -11.43741 -11.17576 -10.98039 -10.66147 -10.53095 -10.34070 -9.88187 -9.65704 -8.54239 -8.43923 -8.31032 -8.11405 -6.62549 -3.95177 1.17242 1.45116 1.78389 3.11416 3.17381 3.21488 3.51511 4.03461 4.34335 4.74320 5.04196 5.12901 5.21109 5.34419 5.52681 5.71790 5.93032 6.01330 6.25090 6.30641 6.40648 6.59975 6.65917 6.91552 7.11365 7.36998 7.89025 8.43438 8.99200 9.34288 9.89747 10.54124 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.046232 B = 0.004482 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.495881 B = 6246.175282 C = 6831.076393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.012 4.012 3 C -0.102 4.102 4 Br -0.060 7.060 5 C -0.091 4.091 6 C -0.127 4.127 7 C -0.086 4.086 8 C -0.094 4.094 9 C 0.464 3.536 10 O -0.587 6.587 11 N -0.540 5.540 12 C -0.295 4.295 13 H 0.109 0.891 14 C 0.024 3.976 15 N -0.889 5.889 16 Si 0.936 3.064 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.271 1.271 20 H 0.075 0.925 21 H 0.105 0.895 22 H 0.057 0.943 23 H 0.128 0.872 24 H 0.130 0.870 25 H 0.133 0.867 26 H 0.393 0.607 27 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.826 14.561 -0.232 14.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.015 4.015 3 C -0.181 4.181 4 Br 0.025 6.975 5 C -0.111 4.111 6 C -0.146 4.146 7 C -0.106 4.106 8 C -0.098 4.098 9 C 0.253 3.747 10 O -0.475 6.475 11 N -0.174 5.174 12 C -0.425 4.425 13 H 0.127 0.873 14 C -0.179 4.179 15 N -0.528 5.528 16 Si 0.762 3.238 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.196 1.196 20 H 0.093 0.907 21 H 0.124 0.876 22 H 0.076 0.924 23 H 0.146 0.854 24 H 0.148 0.852 25 H 0.151 0.849 26 H 0.228 0.772 27 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.813 14.947 -0.282 14.972 hybrid contribution 0.666 -1.173 0.027 1.349 sum 1.479 13.774 -0.255 13.855 Atomic orbital electron populations 1.21215 0.89454 1.03315 1.04080 1.19873 0.97369 0.89984 0.94277 1.21584 0.94527 0.90667 1.11365 1.96573 1.76430 1.26614 1.97869 1.21058 0.91831 0.98828 0.99396 1.20989 0.99927 0.91650 1.02026 1.21568 0.93576 0.98743 0.96739 1.20203 0.93262 0.94318 1.02045 1.17584 0.87481 0.83064 0.86615 1.90551 1.13392 1.86372 1.57155 1.41890 1.09925 1.04870 1.60723 1.19804 0.94250 0.82187 1.46228 0.87344 1.25398 0.95705 1.00187 0.96652 1.69577 1.06495 1.29227 1.47513 0.85823 0.78821 0.79795 0.79332 1.19601 1.20755 1.19591 0.90654 0.87643 0.92412 0.85431 0.85203 0.84924 0.77171 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 8.39 36.01 0.30 -1.95 15 2 C -0.01 -0.21 5.92 -104.18 -0.62 -0.83 15 3 C -0.10 -1.60 6.21 -39.57 -0.25 -1.85 15 4 Br -0.06 -0.80 31.66 -68.01 -2.15 -2.96 15 5 C -0.09 -1.25 9.78 -39.45 -0.39 -1.64 15 6 C -0.13 -1.77 10.03 -39.65 -0.40 -2.17 15 7 C -0.09 -1.46 9.53 -39.16 -0.37 -1.83 15 8 C -0.09 -1.87 5.87 -104.97 -0.62 -2.48 15 9 C 0.46 11.17 7.65 -12.38 -0.09 11.07 15 10 O -0.59 -15.51 12.92 5.28 0.07 -15.44 15 11 N -0.54 -13.53 5.23 -11.87 -0.06 -13.59 15 12 C -0.30 -7.96 9.68 -15.00 -0.15 -8.11 15 13 H 0.11 3.03 7.15 -52.49 -0.38 2.66 15 14 C 0.02 0.62 5.50 -17.45 -0.10 0.53 15 15 N -0.89 -23.12 13.05 55.50 0.72 -22.40 15 16 Si 0.94 20.17 29.55 -169.99 -5.02 15.15 15 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 18 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 20 H 0.07 1.37 8.14 -51.93 -0.42 0.95 15 21 H 0.11 2.17 5.85 -51.93 -0.30 1.87 15 22 H 0.06 0.90 6.35 -51.93 -0.33 0.57 15 23 H 0.13 1.42 8.06 -52.48 -0.42 1.00 15 24 H 0.13 1.40 8.06 -52.49 -0.42 0.98 15 25 H 0.13 2.17 6.45 -52.49 -0.34 1.83 15 26 H 0.39 9.32 5.97 -40.82 -0.24 9.08 15 27 H 0.28 6.79 8.31 -40.82 -0.34 6.45 15 LS Contribution 256.63 15.07 3.87 3.87 Total: -1.00 -28.34 256.63 -7.24 -35.58 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -1.99 Total: 9.05 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -2.67 Total: -9.26 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.66 Total: -35.99 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: 0.07 Total: -15.44 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 35 Polarization: -0.80 SS G_CDS: -2.15 Total: -2.96 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.34 -7.24 -35.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083890984.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.595 kcal (2) G-P(sol) polarization free energy of solvation -28.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds