Wall clock time and date at job start Tue Mar 31 2020 05:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38054 * 120.08105 * 2 1 4 4 Br 1.89093 * 119.93562 * 359.97438 * 3 2 1 5 5 C 1.38438 * 120.12631 * 180.25676 * 3 2 1 6 6 C 1.38384 * 120.29605 * 359.44716 * 5 3 2 7 7 C 1.37916 * 120.16481 * 0.55342 * 6 5 3 8 8 C 1.39610 * 120.08045 * 179.97438 * 2 1 3 9 9 C 1.47726 * 120.14897 * 0.03874 * 8 2 1 10 10 O 1.21597 * 120.00076 * 6.18640 * 9 8 2 11 11 N 1.34775 * 120.00399 * 186.19117 * 9 8 2 12 12 C 1.36864 * 120.00396 * 179.97438 * 11 9 8 13 13 H 1.08002 * 120.00303 * 359.97438 * 12 11 9 14 14 C 1.39051 * 120.00460 * 179.97438 * 12 11 9 15 15 N 1.31362 * 119.99548 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00321 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46967 * 60.00229 * 16 14 12 18 18 H 1.48496 * 109.47351 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47184 * 300.00172 * 16 14 12 20 20 H 1.08993 * 109.47384 * 96.54412 * 1 2 3 21 21 H 1.09005 * 109.47134 * 216.54673 * 1 2 3 22 22 H 1.08996 * 109.47229 * 336.54140 * 1 2 3 23 23 H 1.08007 * 119.85055 * 179.73038 * 5 3 2 24 24 H 1.08002 * 119.91730 * 180.28121 * 6 5 3 25 25 H 1.07999 * 120.06924 * 179.70173 * 7 6 5 26 26 H 0.97006 * 119.99936 * 359.97438 * 11 9 8 27 27 H 0.97003 * 119.99822 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1946 0.0000 4 35 1.2540 2.8325 -0.0007 5 6 3.5833 1.1957 -0.0054 6 6 4.2824 0.0014 0.0008 7 6 3.6035 -1.1990 0.0008 8 6 2.2068 -1.2081 0.0005 9 6 1.4733 -2.4904 0.0002 10 8 0.2627 -2.4983 -0.1139 11 7 2.1457 -3.6515 0.1266 12 6 1.4661 -4.8395 0.1269 13 1 0.3908 -4.8465 0.0262 14 6 2.1600 -6.0375 0.2568 15 7 3.4678 -6.0290 0.3797 16 14 1.2324 -7.6589 0.2564 17 1 0.4963 -7.8077 -1.0248 18 1 2.1948 -8.7798 0.4068 19 1 0.2688 -7.6782 1.3861 20 1 -0.3634 -0.1171 -1.0209 21 1 -0.3634 -0.8256 0.6120 22 1 -0.3633 0.9427 0.4091 23 1 4.1202 2.1329 -0.0098 24 1 5.3624 0.0095 0.0011 25 1 4.1506 -2.1302 0.0007 26 1 3.1115 -3.6453 0.2174 27 1 3.9519 -6.8647 0.4699 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083890984.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:44 Heat of formation + Delta-G solvation = -30.965374 kcal Electronic energy + Delta-G solvation = -14275.541675 eV Core-core repulsion = 11657.595239 eV Total energy + Delta-G solvation = -2617.946436 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.13149 -39.13092 -36.23257 -34.21868 -33.31763 -32.86490 -30.48763 -28.14155 -26.95451 -24.43905 -22.42840 -21.26865 -20.04376 -18.25543 -17.08771 -16.54141 -16.49473 -15.89006 -15.64556 -15.55851 -14.49875 -14.42368 -14.12594 -13.59764 -13.20969 -13.12034 -12.93350 -12.77581 -12.52231 -12.18436 -12.09809 -11.86651 -11.55624 -11.04877 -10.23834 -10.12833 -9.84432 -9.64689 -8.56259 -6.00462 -0.16267 0.15292 0.58009 1.40702 1.41043 1.52075 1.99842 2.25628 2.71061 3.06121 3.26012 3.81331 3.91263 3.97772 4.17391 4.36247 4.61090 4.70238 4.77974 4.81033 5.15122 5.24002 5.31612 5.35235 5.51477 5.75227 5.94867 6.49869 7.02096 7.42551 7.99303 8.60783 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.046232 B = 0.004482 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.495881 B = 6246.175282 C = 6831.076393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.027 4.027 3 C -0.110 4.110 4 Br -0.034 7.034 5 C -0.069 4.069 6 C -0.113 4.113 7 C -0.086 4.086 8 C -0.128 4.128 9 C 0.463 3.537 10 O -0.619 6.619 11 N -0.552 5.552 12 C -0.336 4.336 13 H 0.085 0.915 14 C -0.009 4.009 15 N -0.911 5.911 16 Si 0.998 3.002 17 H -0.270 1.270 18 H -0.267 1.267 19 H -0.270 1.270 20 H 0.066 0.934 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.168 0.832 24 H 0.173 0.827 25 H 0.132 0.868 26 H 0.397 0.603 27 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.491 16.338 -0.219 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.031 4.031 3 C -0.189 4.189 4 Br 0.051 6.949 5 C -0.089 4.089 6 C -0.132 4.132 7 C -0.106 4.106 8 C -0.132 4.132 9 C 0.253 3.747 10 O -0.508 6.508 11 N -0.187 5.187 12 C -0.466 4.466 13 H 0.103 0.897 14 C -0.210 4.210 15 N -0.550 5.550 16 Si 0.820 3.180 17 H -0.195 1.195 18 H -0.192 1.192 19 H -0.195 1.195 20 H 0.085 0.915 21 H 0.091 0.909 22 H 0.099 0.901 23 H 0.185 0.815 24 H 0.191 0.809 25 H 0.150 0.850 26 H 0.233 0.767 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.499 16.748 -0.268 16.935 hybrid contribution 0.177 -1.450 0.015 1.461 sum 2.676 15.297 -0.253 15.532 Atomic orbital electron populations 1.21062 0.90095 1.03090 1.03041 1.19924 0.97243 0.90704 0.95181 1.21783 0.95664 0.90764 1.10714 1.96603 1.76294 1.24217 1.97775 1.21597 0.91036 1.00462 0.95814 1.21433 1.01951 0.90147 0.99628 1.21684 0.92254 1.00386 0.96287 1.19942 0.94606 0.92604 1.06025 1.18370 0.87419 0.84363 0.84522 1.90520 1.15093 1.87332 1.57880 1.41867 1.10003 1.04794 1.62042 1.19754 0.93641 0.83827 1.49345 0.89676 1.26153 0.96576 1.02665 0.95591 1.69629 1.07303 1.30228 1.47836 0.84922 0.77830 0.76108 0.79121 1.19518 1.19177 1.19511 0.91498 0.90860 0.90149 0.81472 0.80923 0.84973 0.76724 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.30 8.39 71.24 0.60 -3.70 15 2 C -0.03 -0.99 5.92 -19.58 -0.12 -1.10 15 3 C -0.11 -3.15 6.21 22.27 0.14 -3.01 15 4 Br -0.03 -0.82 31.66 -20.37 -0.64 -1.46 15 5 C -0.07 -1.59 9.78 22.35 0.22 -1.37 15 6 C -0.11 -2.69 10.03 22.23 0.22 -2.46 15 7 C -0.09 -2.80 9.53 22.54 0.21 -2.59 15 8 C -0.13 -5.13 5.87 -20.09 -0.12 -5.25 15 9 C 0.46 23.40 7.65 86.75 0.66 24.06 15 10 O -0.62 -34.69 12.92 -4.02 -0.05 -34.74 15 11 N -0.55 -28.95 5.23 -309.73 -1.62 -30.57 15 12 C -0.34 -19.02 9.68 84.10 0.81 -18.21 15 13 H 0.09 5.08 7.15 -2.91 -0.02 5.06 15 14 C -0.01 -0.45 5.50 84.96 0.47 0.02 15 15 N -0.91 -47.94 13.05 21.68 0.28 -47.66 15 16 Si 1.00 41.91 29.55 68.60 2.03 43.94 15 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 18 H -0.27 -10.50 7.11 99.48 0.71 -9.79 15 19 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 20 H 0.07 2.52 8.14 -2.39 -0.02 2.50 15 21 H 0.07 3.19 5.85 -2.38 -0.01 3.17 15 22 H 0.08 2.49 6.35 -2.39 -0.02 2.47 15 23 H 0.17 2.63 8.06 -2.91 -0.02 2.61 15 24 H 0.17 2.69 8.06 -2.91 -0.02 2.67 15 25 H 0.13 4.25 6.45 -2.91 -0.02 4.23 15 26 H 0.40 19.57 5.97 -92.70 -0.55 19.01 15 27 H 0.28 13.83 8.31 -92.71 -0.77 13.06 15 Total: -1.00 -63.91 256.63 3.76 -60.15 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.66 Total: 23.95 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 3.10 Total: -13.61 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -1.34 Total: -78.23 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.05 Total: -34.74 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 35 Polarization: -0.82 SS G_CDS: -0.64 Total: -1.46 kcal Total: -63.91 3.76 -60.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083890984.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.189 kcal (2) G-P(sol) polarization free energy of solvation -63.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds