Wall clock time and date at job start Tue Mar 31 2020 05:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38237 * 120.00627 * 2 1 4 4 C 1.38220 * 120.01117 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99014 * 180.02562 * 4 3 2 6 6 N 1.46902 * 109.46972 * 90.00125 * 5 4 3 7 7 C 1.46895 * 110.99984 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47254 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00094 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99714 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00547 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99662 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46906 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.46876 * 119.99850 * 12 10 8 15 15 H 1.48499 * 109.47147 * 239.99962 * 12 10 8 16 16 C 1.38264 * 120.01774 * 359.97438 * 4 3 2 17 17 C 1.38201 * 120.01260 * 0.02562 * 16 4 3 18 18 C 1.38305 * 120.00214 * 179.97438 * 2 1 3 19 19 Br 1.89094 * 120.01155 * 359.74619 * 18 2 1 20 20 H 1.08994 * 109.46968 * 270.02058 * 1 2 3 21 21 H 1.09003 * 109.46617 * 30.02007 * 1 2 3 22 22 H 1.09000 * 109.46668 * 150.01755 * 1 2 3 23 23 H 1.08002 * 119.99263 * 359.97438 * 3 2 1 24 24 H 1.09003 * 109.47133 * 210.00116 * 5 4 3 25 25 H 1.08989 * 109.46958 * 330.00211 * 5 4 3 26 26 H 1.00902 * 110.99876 * 56.04768 * 6 5 4 27 27 H 1.09006 * 109.47446 * 300.00267 * 7 6 5 28 28 H 1.09006 * 109.46960 * 59.99785 * 7 6 5 29 29 H 0.96993 * 120.00175 * 180.02562 * 11 10 8 30 30 H 1.08002 * 119.99516 * 179.97438 * 16 4 3 31 31 H 1.08001 * 120.00207 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1971 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.3337 2.5025 0.0011 6 7 4.5779 2.9263 1.3863 7 6 5.3123 4.1979 1.4261 8 6 5.5444 4.5993 2.8600 9 1 5.1821 3.9728 3.6616 10 6 6.2182 5.7671 3.1485 11 7 6.6590 6.5304 2.1724 12 14 6.5052 6.2651 4.9259 13 1 5.9148 5.2436 5.8276 14 1 7.9644 6.3678 5.1817 15 1 5.8641 7.5800 5.1813 16 6 4.2724 0.0001 0.0016 17 6 3.5821 -1.1972 0.0016 18 6 2.1986 -1.1977 0.0005 19 35 1.2536 -2.8355 0.0085 20 1 -0.3633 0.0004 1.0276 21 1 -0.3633 0.8899 -0.5142 22 1 -0.3633 -0.8902 -0.5136 23 1 1.6583 2.1324 -0.0004 24 1 5.2864 2.3725 -0.5124 25 1 3.7447 3.2620 -0.5127 26 1 5.0669 2.2104 1.9026 27 1 6.2718 4.0793 0.9226 28 1 4.7304 4.9695 0.9219 29 1 7.1333 7.3517 2.3754 30 1 5.3524 0.0006 0.0016 31 1 4.1226 -2.1322 0.0029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085706688.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:00 Heat of formation + Delta-G solvation = 12.885408 kcal Electronic energy + Delta-G solvation = -13930.643948 eV Core-core repulsion = 11450.432119 eV Total energy + Delta-G solvation = -2480.211829 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.52123 -35.61824 -33.26984 -32.40688 -31.80062 -29.75185 -27.25526 -26.56178 -24.17399 -22.20286 -21.50058 -20.24869 -16.70149 -16.10390 -15.85023 -14.97418 -14.57994 -14.31172 -13.98248 -13.42668 -13.31288 -13.04474 -12.44836 -12.26194 -12.18808 -11.56945 -11.46243 -11.15162 -11.01181 -10.78813 -10.68307 -10.59536 -10.17681 -9.96573 -9.22938 -8.77173 -8.54487 -8.46841 -7.37859 -6.06684 -4.08823 1.14014 1.35290 1.60377 3.29429 3.36789 3.42104 3.63755 4.41289 4.71797 4.78663 4.92318 5.29313 5.29735 5.31558 5.50266 5.51410 5.55893 5.65025 5.79228 5.94861 6.10603 6.17094 6.23740 6.37746 6.71821 6.89257 7.16987 7.35106 7.73866 8.06909 8.30916 8.53412 9.00484 9.56420 11.04439 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.042014 B = 0.003203 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.279758 B = 8740.791169 C = 8802.876757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.059 4.059 3 C -0.095 4.095 4 C -0.045 4.045 5 C 0.090 3.910 6 N -0.683 5.683 7 C 0.193 3.807 8 C -0.514 4.514 9 H 0.063 0.937 10 C 0.056 3.944 11 N -0.898 5.898 12 Si 0.899 3.101 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.283 1.283 16 C -0.118 4.118 17 C -0.088 4.088 18 C -0.101 4.101 19 Br -0.063 7.063 20 H 0.076 0.924 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.133 0.867 24 H 0.032 0.968 25 H 0.076 0.924 26 H 0.330 0.670 27 H -0.012 1.012 28 H 0.029 0.971 29 H 0.261 0.739 30 H 0.128 0.872 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.009 -18.567 -7.194 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.061 4.061 3 C -0.115 4.115 4 C -0.046 4.046 5 C -0.039 4.039 6 N -0.313 5.313 7 C 0.066 3.934 8 C -0.553 4.553 9 H 0.081 0.919 10 C -0.146 4.146 11 N -0.537 5.537 12 Si 0.727 3.273 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.137 4.137 17 C -0.108 4.108 18 C -0.180 4.180 19 Br 0.022 6.978 20 H 0.095 0.905 21 H 0.090 0.910 22 H 0.092 0.908 23 H 0.150 0.850 24 H 0.050 0.950 25 H 0.094 0.906 26 H 0.147 0.853 27 H 0.006 0.994 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.146 0.854 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.882 -18.690 -7.157 23.275 hybrid contribution 1.422 0.477 0.663 1.639 sum -10.460 -18.213 -6.495 21.984 Atomic orbital electron populations 1.20970 0.90556 1.03357 1.03079 1.19775 0.96428 0.91571 0.98346 1.20959 0.93661 0.97103 0.99753 1.20202 0.93946 0.95397 0.95039 1.20941 0.97404 0.92226 0.93318 1.60760 1.54460 1.07199 1.08905 1.19606 0.90887 0.85380 0.97501 1.21210 1.35266 1.06728 0.92097 0.91854 1.24990 0.95613 0.96354 0.97596 1.69966 1.38549 1.13823 1.31391 0.86419 0.77739 0.78498 0.84641 1.19619 1.21058 1.20951 1.21086 1.00164 0.91420 1.01053 1.20994 0.91912 0.98804 0.99092 1.21600 0.94611 0.90629 1.11173 1.96608 1.75966 1.27380 1.97818 0.90518 0.91010 0.90832 0.84953 0.95038 0.90587 0.85308 0.99436 0.95254 0.92915 0.85377 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.55 36.01 0.34 -0.91 16 2 C -0.06 -0.76 5.88 -104.59 -0.62 -1.37 16 3 C -0.10 -1.33 9.36 -39.59 -0.37 -1.70 16 4 C -0.04 -0.67 5.39 -104.62 -0.56 -1.23 16 5 C 0.09 1.56 5.81 -4.97 -0.03 1.53 16 6 N -0.68 -14.42 6.48 -116.34 -0.75 -15.17 16 7 C 0.19 4.98 5.44 -4.98 -0.03 4.96 16 8 C -0.51 -14.51 9.32 -34.44 -0.32 -14.83 16 9 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 11 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 12 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 13 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 C -0.12 -1.58 9.70 -39.59 -0.38 -1.96 16 17 C -0.09 -1.09 9.79 -39.55 -0.39 -1.48 16 18 C -0.10 -1.27 6.22 -39.52 -0.25 -1.52 16 19 Br -0.06 -0.68 31.79 -68.01 -2.16 -2.84 16 20 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 22 H 0.07 0.70 6.65 -51.93 -0.35 0.36 16 23 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 24 H 0.03 0.53 8.09 -51.93 -0.42 0.11 16 25 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 26 H 0.33 6.75 8.71 -39.29 -0.34 6.41 16 27 H -0.01 -0.33 8.14 -51.93 -0.42 -0.75 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 31 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 288.67 15.07 4.35 4.35 Total: -1.00 -29.51 288.67 -9.58 -39.08 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -4.03 Total: 0.95 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -2.70 Total: -17.03 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: -0.02 Total: -41.08 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 35 Polarization: -0.68 SS G_CDS: -2.16 Total: -2.84 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.51 -9.58 -39.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085706688.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.968 kcal (2) G-P(sol) polarization free energy of solvation -29.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds