Wall clock time and date at job start Tue Mar 31 2020 05:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38237 * 120.00627 * 2 1 4 4 C 1.38220 * 120.01117 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99014 * 180.02562 * 4 3 2 6 6 N 1.46902 * 109.46972 * 90.00125 * 5 4 3 7 7 C 1.46895 * 110.99984 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47254 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00094 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99714 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00547 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99662 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46906 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.46876 * 119.99850 * 12 10 8 15 15 H 1.48499 * 109.47147 * 239.99962 * 12 10 8 16 16 C 1.38264 * 120.01774 * 359.97438 * 4 3 2 17 17 C 1.38201 * 120.01260 * 0.02562 * 16 4 3 18 18 C 1.38305 * 120.00214 * 179.97438 * 2 1 3 19 19 Br 1.89094 * 120.01155 * 359.74619 * 18 2 1 20 20 H 1.08994 * 109.46968 * 270.02058 * 1 2 3 21 21 H 1.09003 * 109.46617 * 30.02007 * 1 2 3 22 22 H 1.09000 * 109.46668 * 150.01755 * 1 2 3 23 23 H 1.08002 * 119.99263 * 359.97438 * 3 2 1 24 24 H 1.09003 * 109.47133 * 210.00116 * 5 4 3 25 25 H 1.08989 * 109.46958 * 330.00211 * 5 4 3 26 26 H 1.00902 * 110.99876 * 56.04768 * 6 5 4 27 27 H 1.09006 * 109.47446 * 300.00267 * 7 6 5 28 28 H 1.09006 * 109.46960 * 59.99785 * 7 6 5 29 29 H 0.96993 * 120.00175 * 180.02562 * 11 10 8 30 30 H 1.08002 * 119.99516 * 179.97438 * 16 4 3 31 31 H 1.08001 * 120.00207 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1971 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.3337 2.5025 0.0011 6 7 4.5779 2.9263 1.3863 7 6 5.3123 4.1979 1.4261 8 6 5.5444 4.5993 2.8600 9 1 5.1821 3.9728 3.6616 10 6 6.2182 5.7671 3.1485 11 7 6.6590 6.5304 2.1724 12 14 6.5052 6.2651 4.9259 13 1 5.9148 5.2436 5.8276 14 1 7.9644 6.3678 5.1817 15 1 5.8641 7.5800 5.1813 16 6 4.2724 0.0001 0.0016 17 6 3.5821 -1.1972 0.0016 18 6 2.1986 -1.1977 0.0005 19 35 1.2536 -2.8355 0.0085 20 1 -0.3633 0.0004 1.0276 21 1 -0.3633 0.8899 -0.5142 22 1 -0.3633 -0.8902 -0.5136 23 1 1.6583 2.1324 -0.0004 24 1 5.2864 2.3725 -0.5124 25 1 3.7447 3.2620 -0.5127 26 1 5.0669 2.2104 1.9026 27 1 6.2718 4.0793 0.9226 28 1 4.7304 4.9695 0.9219 29 1 7.1333 7.3517 2.3754 30 1 5.3524 0.0006 0.0016 31 1 4.1226 -2.1322 0.0029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085706688.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:00 Heat of formation + Delta-G solvation = -4.350584 kcal Electronic energy + Delta-G solvation = -13931.391357 eV Core-core repulsion = 11450.432119 eV Total energy + Delta-G solvation = -2480.959237 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57270 -37.23341 -34.93647 -33.74590 -33.01910 -30.96179 -28.79254 -27.75815 -25.75747 -23.47604 -23.21095 -21.38695 -18.64312 -17.35882 -17.01256 -16.67316 -16.05364 -15.66440 -15.26841 -14.78163 -14.75986 -14.14171 -13.96660 -13.45228 -13.32155 -13.13446 -12.90007 -12.72408 -12.65159 -12.20672 -12.15356 -11.84534 -11.71834 -11.28971 -11.06249 -10.67701 -9.78243 -9.55532 -9.13899 -8.23426 -6.34546 0.08156 0.33942 0.64409 1.41544 1.42329 1.56193 2.39467 2.58009 3.10204 3.64237 3.71941 3.86367 3.94820 4.25996 4.32161 4.46819 4.61863 4.70662 4.75619 4.78864 4.97311 5.06470 5.18654 5.22918 5.25417 5.38190 5.58954 5.62889 5.85666 6.00004 6.39688 6.66969 6.86313 7.36493 8.88248 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.042014 B = 0.003203 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.279758 B = 8740.791169 C = 8802.876757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.063 4.063 3 C -0.106 4.106 4 C -0.061 4.061 5 C 0.095 3.905 6 N -0.682 5.682 7 C 0.207 3.793 8 C -0.536 4.536 9 H 0.063 0.937 10 C 0.003 3.997 11 N -0.933 5.933 12 Si 0.973 3.027 13 H -0.264 1.264 14 H -0.277 1.277 15 H -0.278 1.278 16 C -0.121 4.121 17 C -0.087 4.087 18 C -0.109 4.109 19 Br -0.043 7.043 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.133 0.867 24 H 0.034 0.966 25 H 0.071 0.929 26 H 0.335 0.665 27 H -0.035 1.035 28 H 0.003 0.997 29 H 0.266 0.734 30 H 0.138 0.862 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.661 -19.911 -6.404 23.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.064 4.064 3 C -0.125 4.125 4 C -0.062 4.062 5 C -0.034 4.034 6 N -0.312 5.312 7 C 0.079 3.921 8 C -0.574 4.574 9 H 0.081 0.919 10 C -0.196 4.196 11 N -0.573 5.573 12 Si 0.797 3.203 13 H -0.188 1.188 14 H -0.202 1.202 15 H -0.204 1.204 16 C -0.141 4.141 17 C -0.107 4.107 18 C -0.188 4.188 19 Br 0.042 6.958 20 H 0.100 0.900 21 H 0.101 0.899 22 H 0.100 0.900 23 H 0.151 0.849 24 H 0.052 0.948 25 H 0.090 0.910 26 H 0.152 0.848 27 H -0.017 1.017 28 H 0.022 0.978 29 H 0.074 0.926 30 H 0.156 0.844 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.548 -20.061 -6.377 24.506 hybrid contribution 1.567 0.800 0.348 1.793 sum -10.981 -19.261 -6.029 22.977 Atomic orbital electron populations 1.21024 0.88830 1.04321 1.03694 1.20024 0.97745 0.91137 0.97543 1.21045 0.93436 0.97870 1.00156 1.19992 0.94295 0.94535 0.97358 1.20893 0.97862 0.93652 0.90966 1.60609 1.53196 1.05784 1.11626 1.19253 0.89711 0.86992 0.96123 1.21556 1.35597 1.07212 0.93028 0.91855 1.25932 0.95090 0.96226 1.02330 1.70084 1.39120 1.14331 1.33813 0.85285 0.77899 0.78204 0.78913 1.18764 1.20225 1.20358 1.21214 1.00790 0.91264 1.00808 1.21237 0.92066 0.99219 0.98143 1.21862 0.95054 0.91551 1.10331 1.96626 1.75539 1.25865 1.97724 0.89951 0.89942 0.90037 0.84913 0.94765 0.91023 0.84782 1.01725 0.97848 0.92558 0.84398 0.83267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.26 9.55 71.24 0.68 -1.58 16 2 C -0.06 -1.50 5.88 -19.85 -0.12 -1.62 16 3 C -0.11 -2.89 9.36 22.27 0.21 -2.68 16 4 C -0.06 -1.79 5.39 -19.86 -0.11 -1.90 16 5 C 0.10 3.33 5.81 85.56 0.50 3.82 16 6 N -0.68 -29.24 6.48 -521.99 -3.38 -32.62 16 7 C 0.21 11.02 5.44 85.56 0.47 11.49 16 8 C -0.54 -30.55 9.32 25.60 0.24 -30.31 16 9 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 10 C 0.00 0.14 5.46 84.66 0.46 0.61 16 11 N -0.93 -56.09 13.29 21.45 0.28 -55.80 16 12 Si 0.97 44.14 29.54 68.60 2.03 46.16 16 13 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 14 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 15 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 16 C -0.12 -3.11 9.70 22.27 0.22 -2.89 16 17 C -0.09 -1.99 9.79 22.29 0.22 -1.77 16 18 C -0.11 -2.52 6.22 22.31 0.14 -2.39 16 19 Br -0.04 -0.83 31.79 -20.37 -0.65 -1.48 16 20 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.08 1.34 8.09 -2.39 -0.02 1.32 16 22 H 0.08 1.37 6.65 -2.39 -0.02 1.35 16 23 H 0.13 3.51 8.06 -2.91 -0.02 3.48 16 24 H 0.03 1.18 8.09 -2.39 -0.02 1.16 16 25 H 0.07 2.53 8.08 -2.39 -0.02 2.51 16 26 H 0.34 13.78 8.71 -89.69 -0.78 13.00 16 27 H -0.03 -1.98 8.14 -2.38 -0.02 -2.00 16 28 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 29 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 30 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 31 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -62.40 288.67 1.53 -60.87 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.34 Total: 12.08 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 2.90 Total: -29.22 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -3.10 Total: -88.42 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 35 Polarization: -0.83 SS G_CDS: -0.65 Total: -1.48 kcal Total: -62.40 1.53 -60.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085706688.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.520 kcal (2) G-P(sol) polarization free energy of solvation -62.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds