Wall clock time and date at job start Tue Mar 31 2020 05:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38433 * 119.90580 * 2 1 4 4 C 1.38302 * 120.32143 * 179.97438 * 3 2 1 5 5 C 1.38088 * 120.13852 * 0.02562 * 4 3 2 6 6 Br 1.89103 * 120.08874 * 179.97438 * 5 4 3 7 7 C 1.39734 * 119.81996 * 359.97438 * 5 4 3 8 8 C 1.47676 * 120.16017 * 180.02562 * 7 5 4 9 9 O 1.21605 * 119.99611 * 359.72709 * 8 7 5 10 10 N 1.34768 * 120.00325 * 179.97438 * 8 7 5 11 11 C 1.36875 * 120.00481 * 179.97438 * 10 8 7 12 12 H 1.07999 * 119.99699 * 0.02562 * 11 10 8 13 13 C 1.39037 * 120.00258 * 180.02562 * 11 10 8 14 14 N 1.31370 * 120.00462 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00097 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47477 * 90.00032 * 15 13 11 17 17 H 1.48502 * 109.47495 * 210.00136 * 15 13 11 18 18 H 1.48498 * 109.47011 * 329.99758 * 15 13 11 19 19 C 1.37885 * 119.91343 * 180.25381 * 2 1 3 20 20 H 1.09001 * 109.46608 * 90.00510 * 1 2 3 21 21 H 1.09001 * 109.47228 * 210.00121 * 1 2 3 22 22 H 1.08998 * 109.47736 * 330.00528 * 1 2 3 23 23 H 1.08003 * 119.83890 * 359.95429 * 3 2 1 24 24 H 1.07994 * 119.93134 * 179.97438 * 4 3 2 25 25 H 0.97008 * 120.00114 * 0.02562 * 10 8 7 26 26 H 0.96991 * 120.00728 * 180.02562 * 14 13 11 27 27 H 1.08009 * 120.07104 * 0.04340 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.2000 0.0000 4 6 3.5802 1.2100 0.0005 5 6 4.2822 0.0209 0.0005 6 35 6.1732 0.0362 0.0005 7 6 3.5914 -1.1938 0.0005 8 6 4.3346 -2.4699 0.0011 9 8 5.5506 -2.4653 -0.0034 10 7 3.6652 -3.6396 0.0016 11 6 4.3539 -4.8224 0.0016 12 1 5.4339 -4.8184 0.0016 13 6 3.6633 -6.0291 0.0016 14 7 2.3496 -6.0341 0.0011 15 14 4.6033 -7.6434 0.0024 16 1 4.8519 -8.0709 1.4026 17 1 3.8050 -8.6815 -0.6978 18 1 5.9004 -7.4611 -0.6973 19 6 2.1947 -1.1951 -0.0053 20 1 -0.3632 -0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5137 23 1 1.6530 2.1329 -0.0007 24 1 4.1123 2.1498 0.0001 25 1 2.6951 -3.6433 0.0013 26 1 1.8677 -6.8759 0.0015 27 1 1.6544 -2.1304 -0.0101 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087921935.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:22 Heat of formation + Delta-G solvation = -5.818619 kcal Electronic energy + Delta-G solvation = -14250.632361 eV Core-core repulsion = 11633.776370 eV Total energy + Delta-G solvation = -2616.855991 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.43309 -37.49190 -34.17279 -32.86097 -31.67926 -30.51546 -29.83628 -26.09933 -25.30480 -23.12289 -21.24686 -19.24443 -18.05917 -16.60976 -15.63951 -15.06954 -14.68512 -14.07166 -13.99796 -13.80601 -13.25912 -12.88090 -12.69227 -12.20804 -11.99945 -11.65918 -11.27739 -11.14648 -10.90218 -10.47148 -10.29612 -10.15684 -9.83942 -9.60518 -8.65492 -8.19222 -8.02863 -7.75763 -6.57459 -3.88294 1.20865 1.46654 2.27246 3.13100 3.21086 3.27269 3.56085 4.07750 4.40736 4.78496 4.94636 5.02269 5.27770 5.30142 5.38410 5.66962 5.71727 5.79495 6.03426 6.10682 6.17534 6.40162 6.59313 6.73612 7.05412 7.42144 7.94590 8.50300 9.05921 9.41045 9.98277 10.59528 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.018894 B = 0.007060 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.604113 B = 3965.096749 C = 5431.554528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.080 4.080 3 C -0.121 4.121 4 C -0.096 4.096 5 C -0.065 4.065 6 Br -0.024 7.024 7 C -0.068 4.068 8 C 0.454 3.546 9 O -0.565 6.565 10 N -0.542 5.542 11 C -0.288 4.288 12 H 0.109 0.891 13 C 0.023 3.977 14 N -0.890 5.890 15 Si 0.934 3.066 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.267 1.267 19 C -0.101 4.101 20 H 0.071 0.929 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.125 0.875 24 H 0.129 0.871 25 H 0.392 0.608 26 H 0.275 0.725 27 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.527 12.885 -0.024 13.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.081 4.081 3 C -0.141 4.141 4 C -0.117 4.117 5 C -0.147 4.147 6 Br 0.062 6.938 7 C -0.073 4.073 8 C 0.241 3.759 9 O -0.450 6.450 10 N -0.177 5.177 11 C -0.418 4.418 12 H 0.127 0.873 13 C -0.181 4.181 14 N -0.530 5.530 15 Si 0.761 3.239 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.191 1.191 19 C -0.121 4.121 20 H 0.090 0.910 21 H 0.089 0.911 22 H 0.084 0.916 23 H 0.143 0.857 24 H 0.147 0.853 25 H 0.226 0.774 26 H 0.085 0.915 27 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.114 12.670 -0.031 12.719 hybrid contribution -0.744 -0.854 0.007 1.133 sum -1.859 11.815 -0.024 11.961 Atomic orbital electron populations 1.20803 0.90913 1.02882 1.02435 1.19903 0.96231 0.92918 0.99004 1.20987 0.93430 0.97525 1.02159 1.20961 0.94136 0.96422 1.00137 1.21860 0.92111 0.94600 1.06115 1.96646 1.01252 1.98729 1.97138 1.20199 0.93390 0.94590 0.99171 1.17651 0.87882 0.83205 0.87130 1.90789 1.12223 1.85961 1.56019 1.41928 1.09389 1.04675 1.61705 1.19854 0.93762 0.82062 1.46129 0.87294 1.25379 0.95706 1.00070 0.96918 1.69585 1.06278 1.28609 1.48526 0.85778 0.79340 0.80205 0.78590 1.20176 1.20752 1.19139 1.21299 0.92777 0.98281 0.99786 0.91049 0.91146 0.91610 0.85659 0.85290 0.77374 0.91455 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 36.01 0.36 -0.86 15 2 C -0.08 -1.14 5.87 -104.68 -0.61 -1.76 15 3 C -0.12 -1.61 9.69 -39.49 -0.38 -1.99 15 4 C -0.10 -1.44 9.78 -39.61 -0.39 -1.83 15 5 C -0.07 -1.23 6.26 -39.08 -0.24 -1.47 15 6 Br -0.02 -0.46 30.40 -68.01 -2.07 -2.52 15 7 C -0.07 -1.40 5.88 -104.95 -0.62 -2.01 15 8 C 0.45 11.29 7.71 -12.41 -0.10 11.19 15 9 O -0.57 -15.36 13.05 5.27 0.07 -15.29 15 10 N -0.54 -13.92 5.23 -11.89 -0.06 -13.99 15 11 C -0.29 -7.93 9.68 -15.00 -0.15 -8.08 15 12 H 0.11 3.12 7.15 -52.49 -0.38 2.75 15 13 C 0.02 0.59 5.50 -17.45 -0.10 0.49 15 14 N -0.89 -23.51 13.05 55.50 0.72 -22.79 15 15 Si 0.93 20.56 29.55 -169.99 -5.02 15.53 15 16 H -0.28 -6.01 7.11 56.52 0.40 -5.60 15 17 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 19 C -0.10 -1.77 9.19 -39.17 -0.36 -2.13 15 20 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 21 H 0.07 0.75 8.08 -51.93 -0.42 0.33 15 22 H 0.06 0.58 8.08 -51.93 -0.42 0.16 15 23 H 0.13 1.24 8.06 -52.48 -0.42 0.82 15 24 H 0.13 1.59 8.06 -52.49 -0.42 1.16 15 25 H 0.39 9.53 5.93 -40.82 -0.24 9.29 15 26 H 0.28 6.84 8.31 -40.82 -0.34 6.50 15 27 H 0.13 2.29 6.41 -52.48 -0.34 1.95 15 LS Contribution 260.37 15.07 3.92 3.92 Total: -1.00 -29.87 260.37 -7.22 -37.08 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -2.20 Total: 6.50 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -2.58 Total: -8.45 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.66 Total: -36.77 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.07 Total: -15.29 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.07 Total: -2.52 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.87 -7.22 -37.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087921935.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.263 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds