Wall clock time and date at job start Tue Mar 31 2020 05:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38433 * 119.90580 * 2 1 4 4 C 1.38302 * 120.32143 * 179.97438 * 3 2 1 5 5 C 1.38088 * 120.13852 * 0.02562 * 4 3 2 6 6 Br 1.89103 * 120.08874 * 179.97438 * 5 4 3 7 7 C 1.39734 * 119.81996 * 359.97438 * 5 4 3 8 8 C 1.47676 * 120.16017 * 180.02562 * 7 5 4 9 9 O 1.21605 * 119.99611 * 359.72709 * 8 7 5 10 10 N 1.34768 * 120.00325 * 179.97438 * 8 7 5 11 11 C 1.36875 * 120.00481 * 179.97438 * 10 8 7 12 12 H 1.07999 * 119.99699 * 0.02562 * 11 10 8 13 13 C 1.39037 * 120.00258 * 180.02562 * 11 10 8 14 14 N 1.31370 * 120.00462 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00097 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47477 * 90.00032 * 15 13 11 17 17 H 1.48502 * 109.47495 * 210.00136 * 15 13 11 18 18 H 1.48498 * 109.47011 * 329.99758 * 15 13 11 19 19 C 1.37885 * 119.91343 * 180.25381 * 2 1 3 20 20 H 1.09001 * 109.46608 * 90.00510 * 1 2 3 21 21 H 1.09001 * 109.47228 * 210.00121 * 1 2 3 22 22 H 1.08998 * 109.47736 * 330.00528 * 1 2 3 23 23 H 1.08003 * 119.83890 * 359.95429 * 3 2 1 24 24 H 1.07994 * 119.93134 * 179.97438 * 4 3 2 25 25 H 0.97008 * 120.00114 * 0.02562 * 10 8 7 26 26 H 0.96991 * 120.00728 * 180.02562 * 14 13 11 27 27 H 1.08009 * 120.07104 * 0.04340 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.2000 0.0000 4 6 3.5802 1.2100 0.0005 5 6 4.2822 0.0209 0.0005 6 35 6.1732 0.0362 0.0005 7 6 3.5914 -1.1938 0.0005 8 6 4.3346 -2.4699 0.0011 9 8 5.5506 -2.4653 -0.0034 10 7 3.6652 -3.6396 0.0016 11 6 4.3539 -4.8224 0.0016 12 1 5.4339 -4.8184 0.0016 13 6 3.6633 -6.0291 0.0016 14 7 2.3496 -6.0341 0.0011 15 14 4.6033 -7.6434 0.0024 16 1 4.8519 -8.0709 1.4026 17 1 3.8050 -8.6815 -0.6978 18 1 5.9004 -7.4611 -0.6973 19 6 2.1947 -1.1951 -0.0053 20 1 -0.3632 -0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5137 23 1 1.6530 2.1329 -0.0007 24 1 4.1123 2.1498 0.0001 25 1 2.6951 -3.6433 0.0013 26 1 1.8677 -6.8759 0.0015 27 1 1.6544 -2.1304 -0.0101 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087921935.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:22 Heat of formation + Delta-G solvation = -24.387638 kcal Electronic energy + Delta-G solvation = -14251.437574 eV Core-core repulsion = 11633.776370 eV Total energy + Delta-G solvation = -2617.661204 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.94810 -39.18076 -36.11712 -34.14874 -33.53692 -32.01031 -31.16904 -27.25901 -27.17555 -24.61158 -22.61766 -20.95846 -19.95447 -18.24665 -17.10601 -16.48071 -16.42824 -15.63692 -15.58309 -15.47988 -14.49316 -14.39546 -14.10367 -13.57126 -13.31150 -13.10817 -12.91621 -12.56880 -12.42072 -12.15790 -12.05639 -11.59047 -11.45642 -11.45215 -10.09313 -9.97515 -9.56540 -9.45709 -8.54556 -5.97608 -0.16081 0.19860 0.86457 1.39191 1.40503 1.53697 2.06386 2.26288 2.73520 3.08396 3.28964 3.77906 3.91833 4.00304 4.27851 4.45465 4.59353 4.71963 4.90062 4.92532 5.13183 5.20674 5.27852 5.36084 5.53432 5.85562 5.94183 6.52383 7.04954 7.45216 8.03332 8.63009 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.018894 B = 0.007060 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.604113 B = 3965.096749 C = 5431.554528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 C -0.095 4.095 4 C -0.091 4.091 5 C -0.082 4.082 6 Br -0.041 7.041 7 C -0.106 4.106 8 C 0.453 3.547 9 O -0.596 6.596 10 N -0.555 5.555 11 C -0.330 4.330 12 H 0.085 0.915 13 C -0.010 4.010 14 N -0.913 5.913 15 Si 0.997 3.003 16 H -0.269 1.269 17 H -0.268 1.268 18 H -0.272 1.272 19 C -0.107 4.107 20 H 0.086 0.914 21 H 0.067 0.933 22 H 0.096 0.904 23 H 0.177 0.823 24 H 0.161 0.839 25 H 0.395 0.605 26 H 0.282 0.718 27 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.448 14.904 -0.014 15.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.074 4.074 3 C -0.114 4.114 4 C -0.111 4.111 5 C -0.164 4.164 6 Br 0.046 6.954 7 C -0.111 4.111 8 C 0.241 3.759 9 O -0.483 6.483 10 N -0.191 5.191 11 C -0.459 4.459 12 H 0.102 0.898 13 C -0.211 4.211 14 N -0.553 5.553 15 Si 0.820 3.180 16 H -0.195 1.195 17 H -0.192 1.192 18 H -0.197 1.197 19 C -0.128 4.128 20 H 0.104 0.896 21 H 0.086 0.914 22 H 0.114 0.886 23 H 0.194 0.806 24 H 0.178 0.822 25 H 0.230 0.770 26 H 0.091 0.909 27 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.064 14.711 -0.020 15.026 hybrid contribution -0.241 -1.221 0.003 1.245 sum -3.305 13.490 -0.017 13.889 Atomic orbital electron populations 1.20906 0.87894 1.04333 1.03782 1.20352 0.98321 0.91891 0.96863 1.21598 0.92741 0.99041 0.98013 1.21383 0.95111 0.96021 0.98580 1.22115 0.91504 0.95437 1.07304 1.96613 1.02904 1.98683 1.97238 1.19961 0.94655 0.92966 1.03514 1.18447 0.87917 0.84492 0.85018 1.90741 1.13830 1.86962 1.56724 1.41908 1.09407 1.04653 1.63117 1.19770 0.93027 0.83686 1.49443 0.89751 1.26133 0.96619 1.02518 0.95829 1.69639 1.07111 1.29639 1.48890 0.84868 0.77911 0.76419 0.78796 1.19464 1.19225 1.19677 1.21370 0.91579 0.99776 1.00029 0.89579 0.91417 0.88565 0.80578 0.82180 0.77025 0.90884 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.92 10.01 71.24 0.71 -1.20 15 2 C -0.07 -1.84 5.87 -19.90 -0.12 -1.95 15 3 C -0.10 -2.02 9.69 22.33 0.22 -1.80 15 4 C -0.09 -2.39 9.78 22.25 0.22 -2.18 15 5 C -0.08 -3.02 6.26 22.60 0.14 -2.88 15 6 Br -0.04 -1.56 30.40 -20.37 -0.62 -2.18 15 7 C -0.11 -4.41 5.88 -20.07 -0.12 -4.53 15 8 C 0.45 23.55 7.71 86.74 0.67 24.22 15 9 O -0.60 -34.03 13.05 -4.05 -0.05 -34.08 15 10 N -0.55 -29.96 5.23 -309.78 -1.62 -31.58 15 11 C -0.33 -19.07 9.68 84.10 0.81 -18.25 15 12 H 0.08 5.16 7.15 -2.91 -0.02 5.14 15 13 C -0.01 -0.54 5.50 84.95 0.47 -0.08 15 14 N -0.91 -49.05 13.05 21.68 0.28 -48.77 15 15 Si 1.00 42.90 29.55 68.60 2.03 44.93 15 16 H -0.27 -11.23 7.11 99.48 0.71 -10.53 15 17 H -0.27 -10.81 7.11 99.48 0.71 -10.10 15 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 19 C -0.11 -3.69 9.19 22.53 0.21 -3.48 15 20 H 0.09 1.29 8.14 -2.39 -0.02 1.27 15 21 H 0.07 1.22 8.08 -2.39 -0.02 1.21 15 22 H 0.10 1.11 8.08 -2.39 -0.02 1.09 15 23 H 0.18 2.09 8.06 -2.91 -0.02 2.07 15 24 H 0.16 3.20 8.06 -2.91 -0.02 3.18 15 25 H 0.39 20.17 5.93 -92.70 -0.55 19.63 15 26 H 0.28 14.02 8.31 -92.71 -0.77 13.25 15 27 H 0.13 4.39 6.41 -2.91 -0.02 4.38 15 Total: -1.00 -68.22 260.37 3.89 -64.33 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.66 Total: 19.48 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 3.21 Total: -12.13 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -1.34 Total: -80.35 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.05 Total: -34.08 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 35 Polarization: -1.56 SS G_CDS: -0.62 Total: -2.18 kcal Total: -68.22 3.89 -64.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087921935.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.946 kcal (2) G-P(sol) polarization free energy of solvation -68.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds