Wall clock time and date at job start Tue Mar 31 2020 05:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00347 * 2 1 4 4 H 1.48494 * 109.47187 * 270.00338 * 3 2 1 5 5 H 1.48498 * 109.46761 * 30.00152 * 3 2 1 6 6 H 1.48495 * 109.47035 * 149.99985 * 3 2 1 7 7 C 1.37876 * 119.99740 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00355 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00107 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.40001 * 65.47782 * 9 7 2 11 11 O 1.42094 * 106.40404 * 292.55500 * 9 7 2 12 12 N 1.65603 * 107.21989 * 179.01320 * 9 7 2 13 13 C 1.39966 * 120.00245 * 298.46398 * 12 9 7 14 14 C 1.39439 * 119.86180 * 313.53957 * 13 12 9 15 15 C 1.37359 * 120.12999 * 179.74317 * 14 13 12 16 16 C 1.39851 * 120.44350 * 0.48068 * 15 14 13 17 17 S 1.75950 * 130.39344 * 179.78745 * 16 15 14 18 18 C 1.75289 * 92.20176 * 180.02562 * 17 16 15 19 19 C 1.31843 * 111.39397 * 359.97438 * 18 17 16 20 20 C 1.39681 * 119.94494 * 359.79176 * 16 15 14 21 21 C 1.37677 * 119.86380 * 133.80330 * 13 12 9 22 22 H 0.97004 * 119.99791 * 0.02562 * 1 2 3 23 23 H 0.97004 * 119.99726 * 118.73886 * 12 9 7 24 24 H 1.07999 * 119.92946 * 359.96952 * 14 13 12 25 25 H 1.07997 * 119.77248 * 180.26970 * 15 14 13 26 26 H 1.07996 * 124.30537 * 180.02562 * 18 17 16 27 27 H 1.07997 * 122.55903 * 179.97438 * 19 18 17 28 28 H 1.08005 * 119.86095 * 0.02562 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 16 1.1234 -2.7200 -0.0005 10 8 0.4324 -2.7842 -1.2405 11 8 0.4705 -2.8063 1.2585 12 7 2.2479 -3.9353 -0.0285 13 6 3.1309 -4.0472 -1.1087 14 6 2.6471 -3.9549 -2.4133 15 6 3.5095 -4.0586 -3.4774 16 6 4.8758 -4.2673 -3.2644 17 16 6.1955 -4.4422 -4.4150 18 6 7.3751 -4.6446 -3.1343 19 6 6.8092 -4.5829 -1.9451 20 6 5.3713 -4.3671 -1.9623 21 6 4.4726 -4.2534 -0.8790 22 1 -0.4850 0.8401 -0.0004 23 1 2.2921 -4.5721 0.7020 24 1 1.5929 -3.7979 -2.5872 25 1 3.1292 -3.9819 -4.4853 26 1 8.4312 -4.7993 -3.2984 27 1 7.3706 -4.6857 -1.0283 28 1 4.8394 -4.3285 0.1341 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088127469.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:54 Heat of formation + Delta-G solvation = -46.966615 kcal Electronic energy + Delta-G solvation = -17437.528957 eV Core-core repulsion = 14478.112918 eV Total energy + Delta-G solvation = -2959.416039 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.012 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.41396 -36.05606 -35.29712 -34.14474 -33.38405 -33.08114 -29.85236 -28.21548 -26.20304 -23.34896 -22.53898 -20.47809 -19.14216 -17.96042 -17.42568 -16.77521 -16.32953 -15.53806 -15.03445 -14.78303 -14.13807 -13.76988 -13.67611 -13.46537 -13.42438 -12.79262 -12.10379 -12.06485 -11.52640 -11.36214 -11.24677 -11.14214 -10.67033 -10.63748 -10.53683 -10.46377 -10.22247 -9.86863 -9.30236 -9.20602 -8.86537 -8.12173 -7.39232 -6.77053 -5.39777 0.90917 1.42824 1.65851 2.09362 2.13726 2.45501 3.04899 3.11485 3.18323 3.93252 4.00672 4.44606 4.58763 4.73977 4.97654 5.31096 5.45526 5.53607 5.65545 5.71744 5.84066 5.99289 6.15006 6.34463 6.40454 6.53128 6.60825 6.91095 7.10707 7.26800 7.72035 7.90583 8.82448 10.17144 Molecular weight = 283.01amu Principal moments of inertia in cm(-1) A = 0.021523 B = 0.005808 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.597145 B = 4819.425105 C = 5378.926605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.135 3.865 3 Si 0.922 3.078 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.262 1.262 7 C -1.014 5.014 8 H 0.104 0.896 9 S 2.705 3.295 10 O -0.995 6.995 11 O -0.997 6.997 12 N -1.076 6.076 13 C 0.185 3.815 14 C -0.120 4.120 15 C -0.067 4.067 16 C -0.151 4.151 17 S 0.061 5.939 18 C -0.197 4.197 19 C -0.113 4.113 20 C -0.065 4.065 21 C -0.110 4.110 22 H 0.292 0.708 23 H 0.413 0.587 24 H 0.168 0.832 25 H 0.130 0.870 26 H 0.163 0.837 27 H 0.143 0.857 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.107 -7.758 -5.259 15.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.084 4.084 3 Si 0.745 3.255 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.186 1.186 7 C -1.148 5.148 8 H 0.122 0.878 9 S 2.807 3.193 10 O -0.985 6.985 11 O -0.988 6.988 12 N -0.820 5.820 13 C 0.086 3.914 14 C -0.143 4.143 15 C -0.090 4.090 16 C -0.267 4.267 17 S 0.322 5.678 18 C -0.330 4.330 19 C -0.143 4.143 20 C -0.073 4.073 21 C -0.134 4.134 22 H 0.103 0.897 23 H 0.246 0.754 24 H 0.185 0.815 25 H 0.148 0.852 26 H 0.181 0.819 27 H 0.161 0.839 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.083 -7.695 -6.895 15.152 hybrid contribution 1.043 0.968 1.930 2.398 sum 12.126 -6.727 -4.965 14.729 Atomic orbital electron populations 1.69885 1.06746 1.30912 1.39844 1.24726 0.94486 1.00818 0.88342 0.86132 0.80177 0.79817 0.79327 1.19045 1.19897 1.18595 1.30391 1.06146 1.11091 1.67158 0.87763 1.00886 0.72016 0.73295 0.73116 1.93313 1.71860 1.87227 1.46078 1.93396 1.73278 1.87351 1.44728 1.54124 1.52299 1.47453 1.28171 1.17137 0.88895 0.98100 0.87233 1.21954 1.02726 0.99072 0.90554 1.20313 0.89539 0.99728 0.99404 1.22557 0.97974 1.10045 0.96096 1.83948 0.96817 1.78194 1.08800 1.24938 1.03132 1.08987 0.95984 1.20939 0.92499 1.02459 0.98448 1.19058 0.92765 1.03179 0.92341 1.20859 0.91002 1.03565 0.97985 0.89747 0.75382 0.81508 0.85192 0.81908 0.83949 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.28 13.19 55.43 0.73 -23.54 15 2 C 0.13 3.70 5.46 -17.82 -0.10 3.60 15 3 Si 0.92 20.49 29.54 -169.99 -5.02 15.47 15 4 H -0.27 -5.73 7.11 56.52 0.40 -5.32 15 5 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 6 H -0.26 -5.66 7.11 56.52 0.40 -5.26 15 7 C -1.01 -27.48 9.61 30.60 0.29 -27.19 15 8 H 0.10 2.65 7.81 -52.48 -0.41 2.24 15 9 S 2.71 69.33 4.92 -107.50 -0.53 68.80 15 10 O -0.99 -27.23 15.15 -57.17 -0.87 -28.10 15 11 O -1.00 -28.25 18.02 -57.17 -1.03 -29.28 15 12 N -1.08 -21.04 5.76 32.34 0.19 -20.85 15 13 C 0.19 3.45 6.11 -83.90 -0.51 2.93 15 14 C -0.12 -2.25 9.20 -39.45 -0.36 -2.61 15 15 C -0.07 -1.09 10.05 -39.30 -0.40 -1.48 15 16 C -0.15 -2.35 6.47 -38.44 -0.25 -2.60 15 17 S 0.06 0.76 23.23 -107.50 -2.50 -1.74 15 18 C -0.20 -2.19 11.02 28.83 0.32 -1.87 15 19 C -0.11 -1.38 10.39 -38.63 -0.40 -1.79 15 20 C -0.07 -1.00 6.04 -105.38 -0.64 -1.64 15 21 C -0.11 -1.77 10.01 -38.66 -0.39 -2.16 15 22 H 0.29 7.55 8.31 -40.82 -0.34 7.21 15 23 H 0.41 6.66 8.96 -34.47 -0.31 6.36 15 24 H 0.17 3.38 5.71 -52.49 -0.30 3.08 15 25 H 0.13 1.78 8.06 -52.49 -0.42 1.36 15 26 H 0.16 1.29 8.06 -52.49 -0.42 0.87 15 27 H 0.14 1.38 8.06 -52.49 -0.42 0.96 15 28 H 0.13 1.78 8.06 -52.48 -0.42 1.36 15 LS Contribution 278.52 15.07 4.20 4.20 Total: -1.00 -33.31 278.52 -9.10 -42.42 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -1.84 Total: 7.44 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: -2.43 Total: -34.80 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.92 Total: -44.40 kcal Atomic # 8 Polarization: -55.48 SS G_CDS: -1.90 Total: -57.38 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 70.08 SS G_CDS: -3.03 Total: 67.05 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.31 -9.10 -42.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088127469.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.549 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds