Wall clock time and date at job start Tue Mar 31 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00347 * 2 1 4 4 H 1.48494 * 109.47187 * 270.00338 * 3 2 1 5 5 H 1.48498 * 109.46761 * 30.00152 * 3 2 1 6 6 H 1.48495 * 109.47035 * 149.99985 * 3 2 1 7 7 C 1.37876 * 119.99740 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00355 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00107 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.40001 * 65.47782 * 9 7 2 11 11 O 1.42094 * 106.40404 * 292.55500 * 9 7 2 12 12 N 1.65603 * 107.21989 * 179.01320 * 9 7 2 13 13 C 1.39966 * 120.00245 * 298.46398 * 12 9 7 14 14 C 1.39439 * 119.86180 * 313.53957 * 13 12 9 15 15 C 1.37359 * 120.12999 * 179.74317 * 14 13 12 16 16 C 1.39851 * 120.44350 * 0.48068 * 15 14 13 17 17 S 1.75950 * 130.39344 * 179.78745 * 16 15 14 18 18 C 1.75289 * 92.20176 * 180.02562 * 17 16 15 19 19 C 1.31843 * 111.39397 * 359.97438 * 18 17 16 20 20 C 1.39681 * 119.94494 * 359.79176 * 16 15 14 21 21 C 1.37677 * 119.86380 * 133.80330 * 13 12 9 22 22 H 0.97004 * 119.99791 * 0.02562 * 1 2 3 23 23 H 0.97004 * 119.99726 * 118.73886 * 12 9 7 24 24 H 1.07999 * 119.92946 * 359.96952 * 14 13 12 25 25 H 1.07997 * 119.77248 * 180.26970 * 15 14 13 26 26 H 1.07996 * 124.30537 * 180.02562 * 18 17 16 27 27 H 1.07997 * 122.55903 * 179.97438 * 19 18 17 28 28 H 1.08005 * 119.86095 * 0.02562 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 16 1.1234 -2.7200 -0.0005 10 8 0.4324 -2.7842 -1.2405 11 8 0.4705 -2.8063 1.2585 12 7 2.2479 -3.9353 -0.0285 13 6 3.1309 -4.0472 -1.1087 14 6 2.6471 -3.9549 -2.4133 15 6 3.5095 -4.0586 -3.4774 16 6 4.8758 -4.2673 -3.2644 17 16 6.1955 -4.4422 -4.4150 18 6 7.3751 -4.6446 -3.1343 19 6 6.8092 -4.5829 -1.9451 20 6 5.3713 -4.3671 -1.9623 21 6 4.4726 -4.2534 -0.8790 22 1 -0.4850 0.8401 -0.0004 23 1 2.2921 -4.5721 0.7020 24 1 1.5929 -3.7979 -2.5872 25 1 3.1292 -3.9819 -4.4853 26 1 8.4312 -4.7993 -3.2984 27 1 7.3706 -4.6857 -1.0283 28 1 4.8394 -4.3285 0.1341 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088127469.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:53 Heat of formation + Delta-G solvation = -71.036730 kcal Electronic energy + Delta-G solvation = -17438.572715 eV Core-core repulsion = 14478.112918 eV Total energy + Delta-G solvation = -2960.459797 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.012 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.65568 -37.64074 -37.07688 -36.25761 -35.24108 -34.57963 -31.09593 -29.48795 -28.30138 -24.49785 -23.79607 -21.70783 -21.05605 -19.49077 -18.87452 -18.46339 -17.99380 -17.05655 -16.69937 -16.04237 -15.93855 -15.68990 -14.89261 -14.66841 -14.59656 -14.03936 -13.95908 -13.41520 -13.36890 -13.04812 -12.98885 -12.62856 -12.46923 -12.33608 -12.32617 -11.92630 -11.62967 -11.33961 -11.27041 -10.96071 -10.33780 -9.36711 -8.81193 -8.50137 -7.52667 -0.23282 -0.01065 0.36282 0.62106 1.10176 1.32129 1.32961 1.38931 1.48856 2.17652 2.54477 2.65300 2.76131 3.51621 3.77267 3.82197 4.10309 4.23563 4.34024 4.49953 4.61331 4.78664 4.82283 5.01160 5.14968 5.21058 5.28788 5.43528 5.52101 5.77990 5.86602 6.27024 6.74404 8.17074 Molecular weight = 283.01amu Principal moments of inertia in cm(-1) A = 0.021523 B = 0.005808 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.597145 B = 4819.425105 C = 5378.926605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.075 3.925 3 Si 0.987 3.013 4 H -0.255 1.255 5 H -0.259 1.259 6 H -0.250 1.250 7 C -1.034 5.034 8 H 0.116 0.884 9 S 2.716 3.284 10 O -1.023 7.023 11 O -1.034 7.034 12 N -1.061 6.061 13 C 0.155 3.845 14 C -0.151 4.151 15 C -0.066 4.066 16 C -0.173 4.173 17 S 0.086 5.914 18 C -0.179 4.179 19 C -0.127 4.127 20 C -0.071 4.071 21 C -0.105 4.105 22 H 0.300 0.700 23 H 0.426 0.574 24 H 0.141 0.859 25 H 0.147 0.853 26 H 0.203 0.797 27 H 0.172 0.828 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.852 -7.540 -5.833 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.805 3.195 4 H -0.179 1.179 5 H -0.183 1.183 6 H -0.173 1.173 7 C -1.168 5.168 8 H 0.134 0.866 9 S 2.818 3.182 10 O -1.013 7.013 11 O -1.024 7.024 12 N -0.811 5.811 13 C 0.057 3.943 14 C -0.175 4.175 15 C -0.089 4.089 16 C -0.288 4.288 17 S 0.348 5.652 18 C -0.312 4.312 19 C -0.156 4.156 20 C -0.080 4.080 21 C -0.129 4.129 22 H 0.111 0.889 23 H 0.263 0.737 24 H 0.158 0.842 25 H 0.165 0.835 26 H 0.220 0.780 27 H 0.190 0.810 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.824 -7.505 -7.470 18.217 hybrid contribution 0.037 0.762 1.977 2.119 sum 14.862 -6.742 -5.493 17.219 Atomic orbital electron populations 1.69966 1.08574 1.32468 1.41074 1.25933 0.95380 1.05086 0.87460 0.85167 0.79203 0.74996 0.80105 1.17927 1.18339 1.17282 1.30739 1.06912 1.12117 1.67054 0.86630 1.00241 0.72345 0.73727 0.71892 1.93280 1.73328 1.87823 1.46869 1.93335 1.74927 1.88117 1.46055 1.53350 1.51921 1.46523 1.29329 1.17304 0.89770 1.00704 0.86487 1.21820 1.02044 1.01772 0.91833 1.20464 0.90086 0.98837 0.99506 1.22908 0.98499 1.09650 0.97776 1.83943 0.95623 1.77329 1.08281 1.25459 1.04592 1.06372 0.94780 1.21149 0.90820 1.03365 1.00292 1.19497 0.94490 1.02193 0.91844 1.21065 0.89903 1.02250 0.99649 0.88929 0.73657 0.84164 0.83507 0.78006 0.81039 0.82872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.40 13.19 21.45 0.28 -52.12 15 2 C 0.08 4.15 5.46 84.65 0.46 4.61 15 3 Si 0.99 41.31 29.54 68.60 2.03 43.33 15 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 15 5 H -0.26 -10.13 7.11 99.48 0.71 -9.42 15 6 H -0.25 -9.84 7.11 99.48 0.71 -9.13 15 7 C -1.03 -56.96 9.61 67.73 0.65 -56.31 15 8 H 0.12 5.88 7.81 -2.91 -0.02 5.85 15 9 S 2.72 144.58 4.92 -56.49 -0.28 144.30 15 10 O -1.02 -59.03 15.15 -128.00 -1.94 -60.97 15 11 O -1.03 -60.89 18.02 -128.00 -2.31 -63.20 15 12 N -1.06 -42.68 5.76 -51.61 -0.30 -42.98 15 13 C 0.16 5.86 6.11 38.00 0.23 6.09 15 14 C -0.15 -5.89 9.20 22.35 0.21 -5.69 15 15 C -0.07 -2.16 10.05 22.45 0.23 -1.93 15 16 C -0.17 -5.07 6.47 23.01 0.15 -4.92 15 17 S 0.09 1.87 23.23 -56.49 -1.31 0.55 15 18 C -0.18 -3.10 11.02 67.02 0.74 -2.36 15 19 C -0.13 -2.58 10.39 23.32 0.24 -2.33 15 20 C -0.07 -2.02 6.04 -20.35 -0.12 -2.14 15 21 C -0.10 -3.25 10.01 22.87 0.23 -3.02 15 22 H 0.30 15.86 8.31 -92.71 -0.77 15.09 15 23 H 0.43 14.11 8.96 -96.74 -0.87 13.24 15 24 H 0.14 6.13 5.71 -2.91 -0.02 6.12 15 25 H 0.15 4.04 8.06 -2.91 -0.02 4.01 15 26 H 0.20 1.93 8.06 -2.91 -0.02 1.90 15 27 H 0.17 2.47 8.06 -2.91 -0.02 2.44 15 28 H 0.15 3.87 8.06 -2.91 -0.02 3.85 15 Total: -1.00 -74.10 278.52 -0.46 -74.57 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.35 Total: 24.51 kcal Atomic # 6 Polarization: -71.01 SS G_CDS: 3.01 Total: -68.00 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -0.01 Total: -95.09 kcal Atomic # 8 Polarization: -119.92 SS G_CDS: -4.25 Total: -124.17 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 16 Polarization: 146.45 SS G_CDS: -1.59 Total: 144.85 kcal Total: -74.10 -0.46 -74.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088127469.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.529 kcal (2) G-P(sol) polarization free energy of solvation -74.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds