Wall clock time and date at job start Tue Mar 31 2020 05:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38349 * 120.00481 * 2 1 4 4 Br 1.89096 * 120.01419 * 0.02562 * 3 2 1 5 5 C 1.38315 * 119.97691 * 180.30089 * 3 2 1 6 6 C 1.38240 * 119.98695 * 359.41821 * 5 3 2 7 7 C 1.38214 * 120.01230 * 0.58126 * 6 5 3 8 8 C 1.38200 * 120.00485 * 180.02562 * 2 1 3 9 9 C 1.50693 * 119.99275 * 359.97438 * 8 2 1 10 10 N 1.46504 * 109.47264 * 79.99793 * 9 8 2 11 11 C 1.46494 * 120.00296 * 269.99782 * 10 9 8 12 12 C 1.36943 * 119.99880 * 89.99862 * 10 9 8 13 13 H 1.07997 * 119.99593 * 23.61071 * 12 10 9 14 14 C 1.38805 * 119.99618 * 203.60959 * 12 10 9 15 15 N 1.31616 * 120.00621 * 11.26250 * 14 12 10 16 16 Si 1.86812 * 119.99605 * 191.25788 * 14 12 10 17 17 H 1.48496 * 109.46893 * 60.00643 * 16 14 12 18 18 H 1.48504 * 109.46766 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47159 * 300.00406 * 16 14 12 20 20 H 1.08997 * 109.47082 * 90.00037 * 1 2 3 21 21 H 1.08996 * 109.47274 * 210.00438 * 1 2 3 22 22 H 1.09004 * 109.47164 * 330.00288 * 1 2 3 23 23 H 1.08000 * 120.00250 * 179.70171 * 5 3 2 24 24 H 1.07998 * 119.99281 * 180.28118 * 6 5 3 25 25 H 1.08005 * 119.99110 * 179.74399 * 7 6 5 26 26 H 1.09004 * 109.47217 * 199.99685 * 9 8 2 27 27 H 1.08995 * 109.47429 * 319.99752 * 9 8 2 28 28 H 1.09005 * 109.47019 * 94.53083 * 11 10 9 29 29 H 1.08996 * 109.47479 * 214.53306 * 11 10 9 30 30 H 1.09004 * 109.47182 * 334.53578 * 11 10 9 31 31 H 0.96993 * 120.00259 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.1981 0.0000 4 35 1.2539 2.8360 0.0007 5 6 3.5820 1.1974 -0.0063 6 6 4.2723 -0.0002 -0.0004 7 6 3.5807 -1.1969 -0.0004 8 6 2.1981 -1.1968 -0.0005 9 6 1.4446 -2.5018 -0.0005 10 7 0.9921 -2.8045 -1.3607 11 6 -0.3161 -2.3312 -1.8198 12 6 1.7920 -3.5299 -2.2029 13 1 2.5442 -4.1903 -1.7975 14 6 1.6358 -3.4163 -3.5774 15 7 0.8830 -2.4595 -4.0775 16 14 2.4943 -4.6216 -4.7177 17 1 2.0339 -6.0010 -4.4171 18 1 2.1689 -4.2868 -6.1274 19 1 3.9628 -4.5346 -4.5149 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 4.1224 2.1324 -0.0112 24 1 5.3523 -0.0008 -0.0007 25 1 4.1205 -2.1324 0.0000 26 1 2.0993 -3.2994 0.3505 27 1 0.5814 -2.4230 0.6604 28 1 -0.1962 -1.3821 -2.3424 29 1 -0.7513 -3.0662 -2.4968 30 1 -0.9741 -2.1929 -0.9619 31 1 0.7742 -2.3800 -5.0380 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090525447.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:03 Heat of formation + Delta-G solvation = 46.960308 kcal Electronic energy + Delta-G solvation = -15063.589748 eV Core-core repulsion = 12584.855518 eV Total energy + Delta-G solvation = -2478.734230 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.13024 -35.57970 -32.66509 -32.31338 -30.52790 -29.19838 -27.03976 -25.66340 -25.32338 -21.96518 -21.08698 -19.81825 -16.74698 -15.94917 -15.28238 -14.87314 -14.43706 -13.99514 -13.39237 -12.92950 -12.80794 -12.65709 -12.03904 -12.01664 -11.73798 -11.12665 -10.92052 -10.87216 -10.56422 -10.47922 -10.39742 -10.25791 -9.94197 -9.90863 -9.74396 -8.57637 -8.13637 -8.09894 -6.78687 -5.76338 -3.21886 1.65850 1.84393 2.02996 3.36611 3.42020 3.42556 4.13245 4.49084 5.22780 5.27820 5.40281 5.53516 5.65863 5.71690 5.83408 5.95053 6.10204 6.15586 6.35742 6.41824 6.51475 6.67243 6.69708 6.77433 6.90214 7.23763 7.34146 7.39975 7.71309 7.77819 8.35698 9.19002 9.80822 10.30173 11.27890 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.026460 B = 0.005919 C = 0.005662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.952288 B = 4729.418347 C = 4943.827875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.044 4.044 3 C -0.092 4.092 4 Br -0.073 7.073 5 C -0.110 4.110 6 C -0.126 4.126 7 C -0.091 4.091 8 C -0.074 4.074 9 C 0.179 3.821 10 N -0.587 5.587 11 C 0.160 3.840 12 C -0.256 4.256 13 H 0.069 0.931 14 C 0.006 3.994 15 N -0.902 5.902 16 Si 0.905 3.095 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.283 1.283 20 H 0.086 0.914 21 H 0.071 0.929 22 H 0.062 0.938 23 H 0.120 0.880 24 H 0.120 0.880 25 H 0.122 0.878 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.033 0.967 29 H 0.042 0.958 30 H 0.001 0.999 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.310 8.596 9.897 13.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.046 4.046 3 C -0.171 4.171 4 Br 0.012 6.988 5 C -0.130 4.130 6 C -0.145 4.145 7 C -0.110 4.110 8 C -0.078 4.078 9 C 0.052 3.948 10 N -0.308 5.308 11 C 0.016 3.984 12 C -0.386 4.386 13 H 0.086 0.914 14 C -0.194 4.194 15 N -0.546 5.546 16 Si 0.735 3.265 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.209 1.209 20 H 0.104 0.896 21 H 0.090 0.910 22 H 0.081 0.919 23 H 0.138 0.862 24 H 0.138 0.862 25 H 0.139 0.861 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.020 0.980 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.850 9.207 9.680 13.386 hybrid contribution 0.920 -0.744 -1.000 1.549 sum 1.770 8.463 8.680 12.251 Atomic orbital electron populations 1.21187 0.90995 1.02245 1.03714 1.19561 0.96359 0.90983 0.97746 1.21569 0.94433 0.90241 1.10874 1.96536 1.76491 1.27850 1.97874 1.20815 0.91947 0.98454 1.01797 1.20990 0.99367 0.92196 1.01929 1.21106 0.94048 0.97750 0.98139 1.21073 0.94073 0.96863 0.95835 1.20019 0.95705 0.90382 0.88715 1.44078 1.15786 1.61045 1.09911 1.21005 0.83952 0.99312 0.94110 1.19168 1.15780 1.16507 0.87136 0.91350 1.25086 0.99481 0.97565 0.97220 1.70039 1.41665 1.31327 1.11560 0.86335 0.79382 0.80820 0.79992 1.20960 1.21595 1.20915 0.89582 0.91040 0.91910 0.86186 0.86198 0.86051 0.92700 0.92976 0.94866 0.93938 0.98018 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 7.67 36.00 0.28 -1.87 16 2 C -0.04 -0.82 5.88 -104.60 -0.62 -1.44 16 3 C -0.09 -1.62 6.22 -39.51 -0.25 -1.86 16 4 Br -0.07 -1.10 31.79 -68.01 -2.16 -3.26 16 5 C -0.11 -1.79 9.79 -39.55 -0.39 -2.18 16 6 C -0.13 -2.04 10.05 -39.59 -0.40 -2.44 16 7 C -0.09 -1.65 9.67 -39.58 -0.38 -2.03 16 8 C -0.07 -1.44 5.46 -104.63 -0.57 -2.01 16 9 C 0.18 3.60 5.37 -5.19 -0.03 3.57 16 10 N -0.59 -14.34 2.91 -182.51 -0.53 -14.87 16 11 C 0.16 3.83 7.24 59.84 0.43 4.26 16 12 C -0.26 -6.88 9.66 -15.06 -0.15 -7.03 16 13 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 14 C 0.01 0.15 5.13 -17.43 -0.09 0.06 16 15 N -0.90 -26.08 10.65 55.49 0.59 -25.49 16 16 Si 0.90 21.69 29.57 -169.99 -5.03 16.67 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H 0.09 1.64 6.11 -51.93 -0.32 1.32 16 21 H 0.07 1.17 5.22 -51.93 -0.27 0.90 16 22 H 0.06 0.96 6.65 -51.93 -0.35 0.61 16 23 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 24 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 25 H 0.12 2.05 8.04 -52.48 -0.42 1.63 16 26 H 0.05 1.05 7.90 -51.93 -0.41 0.64 16 27 H 0.05 0.95 6.13 -51.93 -0.32 0.63 16 28 H 0.03 0.87 6.13 -51.93 -0.32 0.55 16 29 H 0.04 1.10 7.29 -51.93 -0.38 0.72 16 30 H 0.00 0.03 6.49 -51.93 -0.34 -0.31 16 31 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 270.61 15.07 4.08 4.08 Total: -1.00 -29.04 270.61 -8.71 -37.75 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -3.51 Total: -1.90 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.15 Total: -12.97 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.06 Total: -40.36 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.67 kcal Atomic # 35 Polarization: -1.10 SS G_CDS: -2.16 Total: -3.26 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.04 -8.71 -37.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090525447.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.711 kcal (2) G-P(sol) polarization free energy of solvation -29.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds