Wall clock time and date at job start Tue Mar 31 2020 05:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38349 * 120.00481 * 2 1 4 4 Br 1.89096 * 120.01419 * 0.02562 * 3 2 1 5 5 C 1.38315 * 119.97691 * 180.30089 * 3 2 1 6 6 C 1.38240 * 119.98695 * 359.41821 * 5 3 2 7 7 C 1.38214 * 120.01230 * 0.58126 * 6 5 3 8 8 C 1.38200 * 120.00485 * 180.02562 * 2 1 3 9 9 C 1.50693 * 119.99275 * 359.97438 * 8 2 1 10 10 N 1.46504 * 109.47264 * 79.99793 * 9 8 2 11 11 C 1.46494 * 120.00296 * 269.99782 * 10 9 8 12 12 C 1.36943 * 119.99880 * 89.99862 * 10 9 8 13 13 H 1.07997 * 119.99593 * 23.61071 * 12 10 9 14 14 C 1.38805 * 119.99618 * 203.60959 * 12 10 9 15 15 N 1.31616 * 120.00621 * 11.26250 * 14 12 10 16 16 Si 1.86812 * 119.99605 * 191.25788 * 14 12 10 17 17 H 1.48496 * 109.46893 * 60.00643 * 16 14 12 18 18 H 1.48504 * 109.46766 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47159 * 300.00406 * 16 14 12 20 20 H 1.08997 * 109.47082 * 90.00037 * 1 2 3 21 21 H 1.08996 * 109.47274 * 210.00438 * 1 2 3 22 22 H 1.09004 * 109.47164 * 330.00288 * 1 2 3 23 23 H 1.08000 * 120.00250 * 179.70171 * 5 3 2 24 24 H 1.07998 * 119.99281 * 180.28118 * 6 5 3 25 25 H 1.08005 * 119.99110 * 179.74399 * 7 6 5 26 26 H 1.09004 * 109.47217 * 199.99685 * 9 8 2 27 27 H 1.08995 * 109.47429 * 319.99752 * 9 8 2 28 28 H 1.09005 * 109.47019 * 94.53083 * 11 10 9 29 29 H 1.08996 * 109.47479 * 214.53306 * 11 10 9 30 30 H 1.09004 * 109.47182 * 334.53578 * 11 10 9 31 31 H 0.96993 * 120.00259 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.1981 0.0000 4 35 1.2539 2.8360 0.0007 5 6 3.5820 1.1974 -0.0063 6 6 4.2723 -0.0002 -0.0004 7 6 3.5807 -1.1969 -0.0004 8 6 2.1981 -1.1968 -0.0005 9 6 1.4446 -2.5018 -0.0005 10 7 0.9921 -2.8045 -1.3607 11 6 -0.3161 -2.3312 -1.8198 12 6 1.7920 -3.5299 -2.2029 13 1 2.5442 -4.1903 -1.7975 14 6 1.6358 -3.4163 -3.5774 15 7 0.8830 -2.4595 -4.0775 16 14 2.4943 -4.6216 -4.7177 17 1 2.0339 -6.0010 -4.4171 18 1 2.1689 -4.2868 -6.1274 19 1 3.9628 -4.5346 -4.5149 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 4.1224 2.1324 -0.0112 24 1 5.3523 -0.0008 -0.0007 25 1 4.1205 -2.1324 0.0000 26 1 2.0993 -3.2994 0.3505 27 1 0.5814 -2.4230 0.6604 28 1 -0.1962 -1.3821 -2.3424 29 1 -0.7513 -3.0662 -2.4968 30 1 -0.9741 -2.1929 -0.9619 31 1 0.7742 -2.3800 -5.0380 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090525447.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:03 Heat of formation + Delta-G solvation = 32.055201 kcal Electronic energy + Delta-G solvation = -15064.236082 eV Core-core repulsion = 12584.855518 eV Total energy + Delta-G solvation = -2479.380564 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.51968 -37.35810 -34.16542 -33.84267 -32.24749 -30.60881 -28.56005 -27.57418 -26.84221 -23.72485 -22.47564 -21.34175 -18.69987 -17.35740 -16.79510 -16.62225 -15.90352 -15.63407 -15.18803 -14.62532 -14.25860 -14.02491 -13.66982 -13.43535 -13.26800 -12.80093 -12.72421 -12.61311 -12.24775 -12.12395 -12.00845 -11.80790 -11.66988 -11.57500 -11.01776 -10.60890 -9.53067 -9.45395 -8.74702 -7.80881 -5.28941 0.29261 0.48152 0.72121 1.46660 1.48445 1.54628 2.50794 2.77498 3.34608 3.88490 3.92972 3.99252 4.16331 4.29747 4.46226 4.60309 4.73529 4.78266 4.86625 4.93392 4.99742 5.06321 5.30882 5.34517 5.39099 5.54568 5.65609 5.78226 5.81467 6.05486 6.34323 7.16815 7.87537 8.31705 9.21671 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.026460 B = 0.005919 C = 0.005662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.952288 B = 4729.418347 C = 4943.827875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.062 4.062 3 C -0.108 4.108 4 Br -0.052 7.052 5 C -0.108 4.108 6 C -0.124 4.124 7 C -0.104 4.104 8 C -0.096 4.096 9 C 0.179 3.821 10 N -0.603 5.603 11 C 0.179 3.821 12 C -0.259 4.259 13 H 0.073 0.927 14 C -0.050 4.050 15 N -0.935 5.935 16 Si 0.964 3.036 17 H -0.277 1.277 18 H -0.298 1.298 19 H -0.276 1.276 20 H 0.064 0.936 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.146 0.854 24 H 0.153 0.847 25 H 0.128 0.872 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.006 0.994 29 H 0.011 0.989 30 H 0.034 0.966 31 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 9.087 10.995 14.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.065 4.065 3 C -0.187 4.187 4 Br 0.033 6.967 5 C -0.128 4.128 6 C -0.142 4.142 7 C -0.123 4.123 8 C -0.100 4.100 9 C 0.054 3.946 10 N -0.325 5.325 11 C 0.034 3.966 12 C -0.389 4.389 13 H 0.091 0.909 14 C -0.246 4.246 15 N -0.581 5.581 16 Si 0.793 3.207 17 H -0.203 1.203 18 H -0.224 1.224 19 H -0.202 1.202 20 H 0.082 0.918 21 H 0.095 0.905 22 H 0.097 0.903 23 H 0.164 0.836 24 H 0.170 0.830 25 H 0.146 0.854 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.025 0.975 29 H 0.030 0.970 30 H 0.052 0.948 31 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.038 9.701 10.826 14.679 hybrid contribution 0.586 -0.805 -1.191 1.553 sum 2.624 8.896 9.635 13.374 Atomic orbital electron populations 1.21099 0.90436 1.03335 1.02530 1.19775 0.97056 0.91435 0.98231 1.21836 0.95333 0.90901 1.10618 1.96543 1.76245 1.26100 1.97812 1.21225 0.91707 0.99713 1.00125 1.21360 1.01062 0.91370 1.00455 1.21354 0.93793 0.99043 0.98141 1.21002 0.94851 0.96591 0.97568 1.20091 0.96748 0.91172 0.86637 1.44201 1.15888 1.61541 1.10883 1.20710 0.84560 0.96866 0.94458 1.19494 1.15226 1.16518 0.87675 0.90916 1.25782 1.00789 0.99289 0.98693 1.70218 1.43715 1.33183 1.11023 0.85389 0.78586 0.79086 0.77664 1.20288 1.22444 1.20229 0.91759 0.90494 0.90292 0.83607 0.82958 0.85363 0.92006 0.91132 0.97529 0.96989 0.94772 0.94494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.94 7.67 71.23 0.55 -3.39 16 2 C -0.06 -2.27 5.88 -19.85 -0.12 -2.39 16 3 C -0.11 -3.58 6.22 22.31 0.14 -3.44 16 4 Br -0.05 -1.48 31.79 -20.37 -0.65 -2.13 16 5 C -0.11 -3.23 9.79 22.29 0.22 -3.01 16 6 C -0.12 -3.68 10.05 22.26 0.22 -3.45 16 7 C -0.10 -3.59 9.67 22.27 0.22 -3.38 16 8 C -0.10 -3.65 5.46 -19.87 -0.11 -3.76 16 9 C 0.18 7.02 5.37 85.63 0.46 7.48 16 10 N -0.60 -29.38 2.91 -731.33 -2.12 -31.50 16 11 C 0.18 8.64 7.24 127.77 0.92 9.57 16 12 C -0.26 -13.88 9.66 84.03 0.81 -13.07 16 13 H 0.07 3.75 7.85 -2.91 -0.02 3.72 16 14 C -0.05 -2.79 5.13 84.86 0.44 -2.36 16 15 N -0.94 -55.35 10.65 21.65 0.23 -55.12 16 16 Si 0.96 44.91 29.57 68.60 2.03 46.93 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H 0.06 2.45 6.11 -2.39 -0.01 2.44 16 21 H 0.08 2.42 5.22 -2.39 -0.01 2.41 16 22 H 0.08 2.31 6.65 -2.38 -0.02 2.29 16 23 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 24 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 25 H 0.13 4.13 8.04 -2.91 -0.02 4.11 16 26 H 0.06 2.30 7.90 -2.39 -0.02 2.28 16 27 H 0.07 2.45 6.13 -2.39 -0.01 2.44 16 28 H 0.01 0.35 6.13 -2.38 -0.01 0.33 16 29 H 0.01 0.61 7.29 -2.39 -0.02 0.59 16 30 H 0.03 1.38 6.49 -2.38 -0.02 1.37 16 31 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -61.80 270.61 4.37 -57.43 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: 1.13 Total: 5.59 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 3.75 Total: -21.20 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -1.89 Total: -86.62 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 35 Polarization: -1.48 SS G_CDS: -0.65 Total: -2.13 kcal Total: -61.80 4.37 -57.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090525447.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.484 kcal (2) G-P(sol) polarization free energy of solvation -61.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds