Wall clock time and date at job start Tue Mar 31 2020 05:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38382 * 119.85526 * 2 1 4 4 C 1.37914 * 120.16547 * 180.23630 * 3 2 1 5 5 C 1.39667 * 119.86577 * 359.49305 * 4 3 2 6 6 C 1.47727 * 120.14951 * 180.23418 * 5 4 3 7 7 O 1.21600 * 119.99709 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00142 * 180.02562 * 6 5 4 9 9 C 1.36881 * 119.99711 * 180.02562 * 8 6 5 10 10 H 1.07997 * 119.99868 * 359.97438 * 9 8 6 11 11 C 1.39044 * 119.99660 * 180.02562 * 9 8 6 12 12 N 1.31366 * 119.99929 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 120.00385 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47123 * 90.00010 * 13 11 9 15 15 H 1.48500 * 109.47391 * 210.00355 * 13 11 9 16 16 H 1.48506 * 109.46922 * 330.00590 * 13 11 9 17 17 C 1.39619 * 119.71007 * 0.25160 * 5 4 3 18 18 C 1.38055 * 119.83228 * 0.02562 * 17 5 4 19 19 Br 1.89096 * 119.93272 * 180.02562 * 18 17 5 20 20 H 1.09001 * 109.46801 * 270.27373 * 1 2 3 21 21 H 1.09001 * 109.46970 * 30.26981 * 1 2 3 22 22 H 1.08997 * 109.46778 * 150.26908 * 1 2 3 23 23 H 1.08005 * 119.91599 * 0.02562 * 3 2 1 24 24 H 1.08002 * 120.07096 * 179.77482 * 4 3 2 25 25 H 0.96996 * 120.00450 * 359.97438 * 8 6 5 26 26 H 0.97001 * 119.99932 * 179.97438 * 12 11 9 27 27 H 1.08002 * 120.08505 * 179.97438 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.2002 0.0000 4 6 3.5750 1.2076 -0.0049 5 6 4.2771 0.0003 0.0008 6 6 5.7544 0.0010 0.0008 7 8 6.3618 1.0544 -0.0046 8 7 6.4289 -1.1658 0.0058 9 6 7.7977 -1.1651 0.0064 10 1 8.3371 -0.2295 0.0023 11 6 8.4935 -2.3689 0.0110 12 7 9.8071 -2.3682 0.0110 13 14 7.5604 -3.9871 0.0172 14 1 7.3132 -4.4213 -1.3812 15 1 8.3635 -5.0189 0.7213 16 1 6.2627 -3.8075 0.7165 17 6 3.5767 -1.2075 0.0062 18 6 2.1961 -1.2007 0.0052 19 35 1.2446 -2.8348 0.0132 20 1 -0.3633 0.0049 1.0277 21 1 -0.3633 0.8876 -0.5180 22 1 -0.3633 -0.8924 -0.5096 23 1 1.6522 2.1334 0.0004 24 1 4.1111 2.1452 -0.0086 25 1 5.9444 -2.0061 0.0098 26 1 10.2926 -3.2080 0.0146 27 1 4.1134 -2.1447 0.0102 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093208988.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:47 Heat of formation + Delta-G solvation = -32.647638 kcal Electronic energy + Delta-G solvation = -14134.785669 eV Core-core repulsion = 11516.766284 eV Total energy + Delta-G solvation = -2618.019384 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.14037 -39.45677 -36.24731 -34.30841 -33.79765 -33.05953 -30.43305 -28.76195 -26.65732 -23.72597 -23.17333 -21.32372 -20.62359 -18.40383 -17.32337 -16.52063 -16.30804 -15.80816 -15.78390 -15.21004 -14.85618 -14.73184 -14.48464 -14.13346 -13.22131 -13.17948 -13.00465 -12.74957 -12.54399 -12.15285 -12.02737 -11.90449 -11.65135 -11.18673 -10.68856 -10.40643 -9.95878 -9.69468 -8.54654 -6.12356 -0.25539 0.07536 0.52482 1.23107 1.28594 1.36097 1.83558 2.12234 2.64159 2.70588 3.14519 3.64629 3.67384 4.00331 4.08691 4.25349 4.46220 4.61375 4.75409 4.83496 4.99712 5.21648 5.26839 5.33822 5.46044 5.71783 5.82433 6.42702 6.70538 7.20397 7.74771 8.61764 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.021613 B = 0.006536 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.207272 B = 4282.704523 C = 5562.766781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.040 4.040 3 C -0.107 4.107 4 C -0.060 4.060 5 C -0.127 4.127 6 C 0.479 3.521 7 O -0.623 6.623 8 N -0.570 5.570 9 C -0.334 4.334 10 H 0.065 0.935 11 C -0.003 4.003 12 N -0.915 5.915 13 Si 0.950 3.050 14 H -0.250 1.250 15 H -0.262 1.262 16 H -0.238 1.238 17 C -0.076 4.076 18 C -0.106 4.106 19 Br -0.032 7.032 20 H 0.093 0.907 21 H 0.096 0.904 22 H 0.078 0.922 23 H 0.174 0.826 24 H 0.133 0.867 25 H 0.387 0.613 26 H 0.285 0.715 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.224 -2.841 0.050 25.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.043 4.043 3 C -0.125 4.125 4 C -0.080 4.080 5 C -0.131 4.131 6 C 0.269 3.731 7 O -0.510 6.510 8 N -0.209 5.209 9 C -0.462 4.462 10 H 0.083 0.917 11 C -0.205 4.205 12 N -0.554 5.554 13 Si 0.769 3.231 14 H -0.174 1.174 15 H -0.187 1.187 16 H -0.162 1.162 17 C -0.097 4.097 18 C -0.185 4.185 19 Br 0.053 6.947 20 H 0.111 0.889 21 H 0.115 0.885 22 H 0.097 0.903 23 H 0.192 0.808 24 H 0.151 0.849 25 H 0.224 0.776 26 H 0.095 0.905 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -24.932 -2.911 0.048 25.101 hybrid contribution 0.969 -0.549 0.019 1.114 sum -23.962 -3.461 0.067 24.211 Atomic orbital electron populations 1.21116 0.87394 1.05017 1.04426 1.20374 0.98481 0.90681 0.94726 1.21337 0.92265 0.98974 0.99956 1.21488 0.95086 0.97075 0.94361 1.19928 0.91606 0.95302 1.06285 1.18400 0.87809 0.83681 0.83259 1.90601 1.70800 1.32278 1.57358 1.41990 1.06312 1.07378 1.65189 1.19106 0.80914 0.95565 1.50663 0.91706 1.26076 0.96478 1.02427 0.95473 1.69742 1.07895 1.29794 1.47991 0.85586 0.79637 0.77323 0.80586 1.17427 1.18668 1.16154 1.21248 0.93274 0.97463 0.97762 1.21714 0.93568 0.92928 1.10311 1.96653 1.74157 1.26168 1.97707 0.88857 0.88496 0.90316 0.80823 0.84945 0.77619 0.90523 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 9.54 71.24 0.68 -0.95 15 2 C -0.04 -0.85 5.89 -19.78 -0.12 -0.96 15 3 C -0.11 -2.33 9.68 22.23 0.22 -2.12 15 4 C -0.06 -1.88 9.60 22.54 0.22 -1.67 15 5 C -0.13 -4.77 5.87 -20.09 -0.12 -4.89 15 6 C 0.48 23.81 7.72 86.75 0.67 24.48 15 7 O -0.62 -36.32 15.92 -4.03 -0.06 -36.38 15 8 N -0.57 -28.83 5.03 -309.72 -1.56 -30.38 15 9 C -0.33 -19.94 10.16 84.10 0.85 -19.09 15 10 H 0.06 4.54 7.38 -2.91 -0.02 4.52 15 11 C 0.00 -0.18 5.50 84.96 0.47 0.28 15 12 N -0.92 -54.48 13.95 21.68 0.30 -54.18 15 13 Si 0.95 39.03 27.74 68.60 1.90 40.93 15 14 H -0.25 -9.69 7.11 99.48 0.71 -8.98 15 15 H -0.26 -10.40 7.11 99.48 0.71 -9.70 15 16 H -0.24 -8.57 6.52 99.48 0.65 -7.92 15 17 C -0.08 -2.43 9.28 22.56 0.21 -2.22 15 18 C -0.11 -2.71 6.21 22.27 0.14 -2.57 15 19 Br -0.03 -0.69 31.76 -20.37 -0.65 -1.33 15 20 H 0.09 1.04 8.14 -2.39 -0.02 1.02 15 21 H 0.10 0.87 8.08 -2.39 -0.02 0.85 15 22 H 0.08 1.05 6.62 -2.39 -0.02 1.04 15 23 H 0.17 2.38 8.06 -2.91 -0.02 2.36 15 24 H 0.13 4.29 7.65 -2.91 -0.02 4.27 15 25 H 0.39 16.73 3.79 -92.71 -0.35 16.38 15 26 H 0.28 15.34 8.31 -92.71 -0.77 14.57 15 27 H 0.13 4.00 6.40 -2.91 -0.02 3.98 15 Total: -1.00 -72.61 259.03 3.95 -68.66 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.80 Total: 22.39 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 3.22 Total: -9.71 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -1.26 Total: -84.56 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -0.06 Total: -36.38 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 1.90 Total: 40.93 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -0.65 Total: -1.33 kcal Total: -72.61 3.95 -68.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093208988.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.015 kcal (2) G-P(sol) polarization free energy of solvation -72.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds