Wall clock time and date at job start Tue Mar 31 2020 06:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00136 * 2 1 4 4 H 1.48502 * 109.46844 * 269.99631 * 3 2 1 5 5 H 1.48497 * 109.46901 * 29.99710 * 3 2 1 6 6 H 1.48497 * 109.46828 * 149.99803 * 3 2 1 7 7 C 1.37880 * 119.99647 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00274 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99633 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46986 * 180.02562 * 9 7 2 11 11 O 1.45199 * 109.47272 * 180.02562 * 10 9 7 12 12 C 1.34711 * 116.99947 * 179.97438 * 11 10 9 13 13 O 1.21469 * 120.00276 * 0.02562 * 12 11 10 14 14 C 1.47735 * 119.99901 * 180.02562 * 12 11 10 15 15 C 1.39649 * 120.13588 * 0.24925 * 14 12 11 16 16 C 1.37933 * 119.89848 * 180.30025 * 15 14 12 17 17 C 1.38348 * 120.17832 * 359.44847 * 16 15 14 18 18 N 1.48022 * 119.86327 * 180.25620 * 17 16 15 19 19 O 1.21797 * 119.99567 * 0.02562 * 18 17 16 20 20 O 1.21805 * 119.99812 * 180.02562 * 18 17 16 21 21 C 1.38566 * 120.28140 * 0.27906 * 17 16 15 22 22 F 1.35094 * 119.95675 * 180.02562 * 21 17 16 23 23 C 1.38206 * 120.09191 * 0.02562 * 21 17 16 24 24 H 0.97006 * 119.99788 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47240 * 60.00346 * 9 7 2 26 26 H 1.09007 * 109.47479 * 299.99905 * 9 7 2 27 27 H 1.08997 * 109.47125 * 59.99936 * 10 9 7 28 28 H 1.08999 * 109.47250 * 300.00057 * 10 9 7 29 29 H 1.08000 * 120.05262 * 0.02584 * 15 14 12 30 30 H 1.08002 * 119.91438 * 179.73289 * 16 15 14 31 31 H 1.07994 * 120.08477 * 179.97438 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 8 5.4734 -2.6367 0.0022 12 6 6.0849 -3.8370 0.0028 13 8 5.4233 -4.8557 0.0018 14 6 7.5602 -3.9144 0.0045 15 6 8.3236 -2.7450 0.0108 16 6 9.7008 -2.8229 0.0062 17 6 10.3276 -4.0563 0.0068 18 7 11.8059 -4.1318 0.0076 19 8 12.4678 -3.1093 0.0081 20 8 12.3603 -5.2163 0.0076 21 6 9.5774 -5.2213 0.0063 22 9 10.1963 -6.4222 0.0074 23 6 8.1969 -5.1565 0.0046 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6802 0.8911 26 1 3.8752 -0.6805 -0.8889 27 1 3.6584 -3.1502 -0.8892 28 1 3.6577 -3.1506 0.8907 29 1 7.8365 -1.7811 0.0149 30 1 10.2914 -1.9187 0.0067 31 1 7.6123 -6.0646 0.0037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110898093.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:27 Heat of formation + Delta-G solvation = -107.484407 kcal Electronic energy + Delta-G solvation = -20791.197929 eV Core-core repulsion = 16956.024690 eV Total energy + Delta-G solvation = -3835.173239 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.80990 -42.54715 -40.84263 -39.24348 -36.94870 -36.63445 -33.53642 -32.87817 -31.73038 -30.88345 -27.78310 -25.54039 -23.97975 -23.70809 -21.59688 -20.87284 -19.94963 -19.13859 -18.73878 -18.05515 -17.42179 -17.01667 -16.60607 -16.56526 -16.30754 -16.25208 -15.13348 -14.56737 -14.35079 -13.97435 -13.75040 -13.39985 -13.13713 -12.70133 -12.41101 -11.97795 -11.79593 -11.59407 -11.50857 -11.49687 -11.04685 -10.88570 -10.39475 -10.33305 -10.10663 -9.93543 -9.82535 -9.50477 -8.74898 -6.24973 -4.27704 -1.00808 0.13637 0.56627 0.80194 1.91270 2.33337 2.79779 3.03484 3.17840 3.26255 3.27681 3.62604 3.91038 4.07871 4.14710 4.26640 4.57306 4.80207 4.98525 5.04522 5.08142 5.32618 5.53791 5.65580 5.72687 5.90265 6.21028 6.35152 6.92090 7.01984 7.18071 7.44924 7.59989 8.25523 8.75778 9.33524 10.87391 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.032663 B = 0.003148 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.022829 B = 8891.520273 C = 9728.095130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.882 3.118 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.532 4.532 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.082 3.918 11 O -0.349 6.349 12 C 0.498 3.502 13 O -0.489 6.489 14 C -0.033 4.033 15 C -0.073 4.073 16 C -0.038 4.038 17 C -0.064 4.064 18 N 0.027 4.973 19 O -0.148 6.148 20 O -0.143 6.143 21 C 0.164 3.836 22 F -0.097 7.097 23 C -0.099 4.099 24 H 0.267 0.733 25 H 0.030 0.970 26 H 0.025 0.975 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.175 0.825 30 H 0.173 0.827 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.280 -6.353 0.040 21.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.570 4.570 8 H 0.094 0.906 9 C -0.046 4.046 10 C 0.010 3.990 11 O -0.265 6.265 12 C 0.341 3.659 13 O -0.377 6.377 14 C -0.035 4.035 15 C -0.091 4.091 16 C -0.056 4.056 17 C -0.148 4.148 18 N 0.548 4.452 19 O -0.364 6.364 20 O -0.361 6.361 21 C 0.143 3.857 22 F -0.075 7.075 23 C -0.118 4.118 24 H 0.077 0.923 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.192 0.808 30 H 0.190 0.810 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 19.161 -6.523 0.043 20.241 hybrid contribution 0.641 0.510 -0.022 0.820 sum 19.803 -6.013 0.021 20.695 Atomic orbital electron populations 1.69888 1.06318 1.27384 1.49562 1.24940 0.94777 0.99227 0.93991 0.86746 0.80369 0.83258 0.78779 1.19991 1.21071 1.18789 1.20790 0.88047 0.95137 1.53007 0.90578 1.19651 0.97202 0.89700 0.98069 1.23599 0.70739 1.02236 1.02381 1.86525 1.27377 1.30305 1.82328 1.20641 0.87772 0.83105 0.74412 1.90884 1.66356 1.36262 1.44242 1.19541 0.91937 0.93436 0.98538 1.21736 0.91753 1.00178 0.95471 1.21059 0.95166 0.96161 0.93252 1.21552 0.80683 0.96110 1.16450 1.43349 1.02682 1.00904 0.98236 1.94563 1.63726 1.25130 1.53003 1.94633 1.72923 1.15881 1.52647 1.17040 0.90144 0.79747 0.98806 1.91704 1.82252 1.41040 1.92484 1.21353 0.91087 1.00200 0.99204 0.92275 0.95213 0.95647 0.91104 0.91091 0.80801 0.80965 0.80710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.96 55.43 0.77 -25.41 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 20.14 27.47 -169.99 -4.67 15.47 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 7 C -0.53 -14.16 9.66 -34.44 -0.33 -14.49 16 8 H 0.08 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.19 4.42 -27.89 -0.12 -0.31 16 10 C 0.08 1.53 5.41 37.16 0.20 1.73 16 11 O -0.35 -5.34 9.47 -40.52 -0.38 -5.73 16 12 C 0.50 6.76 7.90 34.61 0.27 7.03 16 13 O -0.49 -7.86 16.14 -19.24 -0.31 -8.18 16 14 C -0.03 -0.32 5.87 -104.99 -0.62 -0.94 16 15 C -0.07 -0.55 9.62 -39.17 -0.38 -0.93 16 16 C -0.04 -0.27 9.54 -39.65 -0.38 -0.65 16 17 C -0.06 -0.60 6.86 -79.78 -0.55 -1.15 16 18 N 0.03 0.31 4.45 34.04 0.15 0.46 16 19 O -0.15 -1.70 18.43 -29.46 -0.54 -2.24 16 20 O -0.14 -1.83 17.40 -29.46 -0.51 -2.34 16 21 C 0.16 1.53 7.24 -39.47 -0.29 1.25 16 22 F -0.10 -1.01 15.46 2.25 0.03 -0.97 16 23 C -0.10 -0.88 9.57 -39.09 -0.37 -1.26 16 24 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 26 H 0.03 0.54 7.57 -51.92 -0.39 0.14 16 27 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.17 1.11 7.61 -52.49 -0.40 0.71 16 30 H 0.17 0.87 7.60 -52.49 -0.40 0.47 16 31 H 0.18 1.42 7.65 -52.49 -0.40 1.02 16 LS Contribution 295.30 15.07 4.45 4.45 Total: -1.00 -30.27 295.30 -6.06 -36.33 By element: Atomic # 1 Polarization: -1.64 SS G_CDS: -2.40 Total: -4.03 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -2.66 Total: -7.80 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 0.93 Total: -24.95 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -1.75 Total: -18.49 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.03 Total: -0.97 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.67 Total: 15.47 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.27 -6.06 -36.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110898093.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.154 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds