Wall clock time and date at job start Tue Mar 31 2020 06:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00136 * 2 1 4 4 H 1.48502 * 109.46844 * 269.99631 * 3 2 1 5 5 H 1.48497 * 109.46901 * 29.99710 * 3 2 1 6 6 H 1.48497 * 109.46828 * 149.99803 * 3 2 1 7 7 C 1.37880 * 119.99647 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00274 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99633 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46986 * 180.02562 * 9 7 2 11 11 O 1.45199 * 109.47272 * 180.02562 * 10 9 7 12 12 C 1.34711 * 116.99947 * 179.97438 * 11 10 9 13 13 O 1.21469 * 120.00276 * 0.02562 * 12 11 10 14 14 C 1.47735 * 119.99901 * 180.02562 * 12 11 10 15 15 C 1.39649 * 120.13588 * 0.24925 * 14 12 11 16 16 C 1.37933 * 119.89848 * 180.30025 * 15 14 12 17 17 C 1.38348 * 120.17832 * 359.44847 * 16 15 14 18 18 N 1.48022 * 119.86327 * 180.25620 * 17 16 15 19 19 O 1.21797 * 119.99567 * 0.02562 * 18 17 16 20 20 O 1.21805 * 119.99812 * 180.02562 * 18 17 16 21 21 C 1.38566 * 120.28140 * 0.27906 * 17 16 15 22 22 F 1.35094 * 119.95675 * 180.02562 * 21 17 16 23 23 C 1.38206 * 120.09191 * 0.02562 * 21 17 16 24 24 H 0.97006 * 119.99788 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47240 * 60.00346 * 9 7 2 26 26 H 1.09007 * 109.47479 * 299.99905 * 9 7 2 27 27 H 1.08997 * 109.47125 * 59.99936 * 10 9 7 28 28 H 1.08999 * 109.47250 * 300.00057 * 10 9 7 29 29 H 1.08000 * 120.05262 * 0.02584 * 15 14 12 30 30 H 1.08002 * 119.91438 * 179.73289 * 16 15 14 31 31 H 1.07994 * 120.08477 * 179.97438 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0010 11 8 5.4734 -2.6367 0.0022 12 6 6.0849 -3.8370 0.0028 13 8 5.4233 -4.8557 0.0018 14 6 7.5602 -3.9144 0.0045 15 6 8.3236 -2.7450 0.0108 16 6 9.7008 -2.8229 0.0062 17 6 10.3276 -4.0563 0.0068 18 7 11.8059 -4.1318 0.0076 19 8 12.4678 -3.1093 0.0081 20 8 12.3603 -5.2163 0.0076 21 6 9.5774 -5.2213 0.0063 22 9 10.1963 -6.4222 0.0074 23 6 8.1969 -5.1565 0.0046 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6802 0.8911 26 1 3.8752 -0.6805 -0.8889 27 1 3.6584 -3.1502 -0.8892 28 1 3.6577 -3.1506 0.8907 29 1 7.8365 -1.7811 0.0149 30 1 10.2914 -1.9187 0.0067 31 1 7.6123 -6.0646 0.0037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110898093.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:27 Heat of formation + Delta-G solvation = -124.035817 kcal Electronic energy + Delta-G solvation = -20791.915652 eV Core-core repulsion = 16956.024690 eV Total energy + Delta-G solvation = -3835.890962 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.56959 -43.39147 -41.89859 -40.12730 -37.90377 -37.81359 -35.40914 -33.76605 -32.79209 -32.29278 -28.75949 -27.13527 -24.97428 -24.43025 -22.85150 -22.36098 -20.73523 -19.99479 -19.79447 -18.97168 -18.88768 -18.17653 -17.74458 -17.53038 -17.38694 -17.10842 -16.29201 -15.81592 -15.38454 -15.33647 -14.88102 -14.48430 -14.30422 -13.98438 -13.35404 -13.29147 -13.03556 -12.87864 -12.55594 -12.51271 -12.44391 -12.41559 -11.84306 -11.79403 -11.53803 -11.47584 -11.14219 -10.79577 -10.49620 -8.32731 -6.41487 -1.81927 -0.52372 -0.30096 0.01119 0.99071 1.23505 1.41501 1.43374 1.55062 1.97061 2.30671 2.36319 2.93802 3.03033 3.10784 3.23018 3.40771 3.89342 4.02857 4.16862 4.17709 4.28450 4.39769 4.62366 4.67270 4.84727 4.96649 5.10600 5.31353 5.36139 5.52954 6.16127 6.26874 6.38998 6.66141 7.23979 8.83302 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.032663 B = 0.003148 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.022829 B = 8891.520273 C = 9728.095130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.236 1.236 7 C -0.543 4.543 8 H 0.034 0.966 9 C -0.004 4.004 10 C 0.094 3.906 11 O -0.342 6.342 12 C 0.503 3.497 13 O -0.519 6.519 14 C -0.039 4.039 15 C -0.053 4.053 16 C -0.018 4.018 17 C -0.066 4.066 18 N 0.026 4.974 19 O -0.131 6.131 20 O -0.187 6.187 21 C 0.157 3.843 22 F -0.106 7.106 23 C -0.090 4.090 24 H 0.270 0.730 25 H 0.041 0.959 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.196 0.804 30 H 0.203 0.797 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.612 -4.334 0.046 23.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.777 3.223 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.159 1.159 7 C -0.581 4.581 8 H 0.053 0.947 9 C -0.042 4.042 10 C 0.021 3.979 11 O -0.258 6.258 12 C 0.348 3.652 13 O -0.409 6.409 14 C -0.041 4.041 15 C -0.071 4.071 16 C -0.037 4.037 17 C -0.150 4.150 18 N 0.545 4.455 19 O -0.354 6.354 20 O -0.395 6.395 21 C 0.136 3.864 22 F -0.084 7.084 23 C -0.109 4.109 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.213 0.787 30 H 0.220 0.780 31 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 21.536 -4.615 0.049 22.025 hybrid contribution -0.101 -0.142 -0.026 0.176 sum 21.436 -4.757 0.023 21.957 Atomic orbital electron populations 1.70054 1.08542 1.28613 1.51474 1.25996 0.95627 1.03771 0.93480 0.85597 0.79770 0.77447 0.79503 1.18874 1.21258 1.15857 1.21135 0.90965 0.93687 1.52313 0.94727 1.19486 0.93853 0.91849 0.99003 1.23107 0.72820 1.00191 1.01809 1.86476 1.25201 1.31298 1.82777 1.21147 0.89073 0.81981 0.73037 1.90884 1.67355 1.36992 1.45642 1.19272 0.89475 0.94658 1.00695 1.21935 0.91619 1.00065 0.93496 1.21361 0.94969 0.96151 0.91197 1.21739 0.79355 0.97036 1.16905 1.43591 1.03508 1.00610 0.97809 1.94533 1.64433 1.24903 1.51534 1.94651 1.73650 1.16204 1.54965 1.17057 0.90174 0.79590 0.99623 1.91683 1.82406 1.41678 1.92671 1.21292 0.90822 1.00243 0.98578 0.92157 0.94076 0.94212 0.91822 0.91836 0.78665 0.78001 0.80423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.78 13.96 21.45 0.30 -56.48 16 2 C 0.01 0.50 5.47 84.66 0.46 0.96 16 3 Si 0.95 40.24 27.47 68.60 1.88 42.13 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.29 -12.08 7.11 99.48 0.71 -11.38 16 6 H -0.24 -8.82 6.54 99.48 0.65 -8.16 16 7 C -0.54 -29.22 9.66 25.60 0.25 -28.97 16 8 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 9 C 0.00 -0.19 4.42 29.85 0.13 -0.05 16 10 C 0.09 3.38 5.41 71.98 0.39 3.77 16 11 O -0.34 -9.59 9.47 -56.21 -0.53 -10.13 16 12 C 0.50 12.71 7.90 70.33 0.56 13.26 16 13 O -0.52 -16.35 16.14 19.93 0.32 -16.02 16 14 C -0.04 -0.67 5.87 -20.10 -0.12 -0.78 16 15 C -0.05 -0.58 9.62 22.54 0.22 -0.36 16 16 C -0.02 -0.19 9.54 22.22 0.21 0.03 16 17 C -0.07 -1.08 6.86 36.48 0.25 -0.82 16 18 N 0.03 0.55 4.45 -46.21 -0.21 0.35 16 19 O -0.13 -2.66 18.43 18.89 0.35 -2.32 16 20 O -0.19 -4.72 17.40 18.88 0.33 -4.39 16 21 C 0.16 2.70 7.24 22.34 0.16 2.86 16 22 F -0.11 -2.17 15.46 44.97 0.70 -1.48 16 23 C -0.09 -1.45 9.57 22.59 0.22 -1.24 16 24 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 25 H 0.04 1.63 7.20 -2.39 -0.02 1.61 16 26 H 0.04 1.55 7.57 -2.38 -0.02 1.54 16 27 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.20 1.44 7.61 -2.91 -0.02 1.42 16 30 H 0.20 0.93 7.60 -2.91 -0.02 0.90 16 31 H 0.18 2.74 7.65 -2.91 -0.02 2.72 16 Total: -1.00 -66.99 295.30 7.00 -59.99 By element: Atomic # 1 Polarization: -1.43 SS G_CDS: 1.13 Total: -0.30 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 2.73 Total: -11.36 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.09 Total: -56.13 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: 0.47 Total: -32.85 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.70 Total: -1.48 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 1.88 Total: 42.13 kcal Total: -66.99 7.00 -59.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110898093.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.041 kcal (2) G-P(sol) polarization free energy of solvation -66.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds