Wall clock time and date at job start Tue Mar 31 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99814 * 2 1 4 4 H 1.48502 * 109.47184 * 0.02562 * 3 2 1 5 5 H 1.48510 * 109.47150 * 119.99612 * 3 2 1 6 6 H 1.48494 * 109.47439 * 239.99645 * 3 2 1 7 7 C 1.38807 * 120.00472 * 180.27222 * 2 1 3 8 8 H 1.08002 * 120.00835 * 199.23606 * 7 2 1 9 9 N 1.36945 * 119.99866 * 19.23748 * 7 2 1 10 10 C 1.46373 * 119.64688 * 43.62852 * 9 7 2 11 11 C 1.53753 * 109.20661 * 114.91461 * 10 9 7 12 12 S 1.81740 * 108.75425 * 57.82860 * 11 10 9 13 13 C 1.81736 * 102.30679 * 305.34897 * 12 11 10 14 14 C 1.46372 * 119.64351 * 223.90594 * 9 7 2 15 15 H 1.09002 * 109.47065 * 125.07812 * 14 9 7 16 16 C 1.50695 * 109.47256 * 5.08696 * 14 9 7 17 17 C 1.38244 * 119.98628 * 293.86666 * 16 14 9 18 18 C 1.38212 * 120.01487 * 179.72636 * 17 16 14 19 19 C 1.38351 * 119.98824 * 0.54974 * 18 17 16 20 20 Cl 1.73589 * 120.01834 * 179.74952 * 19 18 17 21 21 C 1.38360 * 119.96907 * 359.72328 * 19 18 17 22 22 C 1.38212 * 119.98828 * 0.02562 * 21 19 18 23 23 H 0.97003 * 119.99448 * 180.46607 * 1 2 3 24 24 H 1.09002 * 109.47079 * 234.92153 * 10 9 7 25 25 H 1.09001 * 109.46697 * 354.91133 * 10 9 7 26 26 H 1.09010 * 109.69681 * 297.99858 * 11 10 9 27 27 H 1.08993 * 109.62770 * 177.62730 * 11 10 9 28 28 H 1.08995 * 109.58548 * 294.73999 * 13 12 11 29 29 H 1.09002 * 109.69462 * 174.39643 * 13 12 11 30 30 H 1.08006 * 119.99502 * 359.97438 * 17 16 14 31 31 H 1.08008 * 120.00849 * 180.26948 * 18 17 16 32 32 H 1.08004 * 120.00307 * 180.02562 * 21 19 18 33 33 H 1.07997 * 119.99516 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6965 1.2126 6 1 3.1039 1.6965 -1.2124 7 6 2.0103 -1.2020 -0.0057 8 1 3.0451 -1.2297 0.3023 9 7 1.3830 -2.3531 -0.4020 10 6 0.5266 -2.3392 -1.5889 11 6 1.1488 -3.2355 -2.6721 12 16 1.3426 -4.9135 -2.0016 13 6 2.3060 -4.6175 -0.4893 14 6 1.5713 -3.5826 0.3696 15 1 0.5996 -3.9790 0.6643 16 6 2.3859 -3.2829 1.6014 17 6 3.7052 -2.8886 1.4783 18 6 4.4512 -2.6081 2.6074 19 6 3.8809 -2.7330 3.8617 20 17 4.8191 -2.3872 5.2807 21 6 2.5621 -3.1332 3.9846 22 6 1.8156 -3.4084 2.8544 23 1 -0.4849 -0.8401 0.0068 24 1 -0.4628 -2.7144 -1.3275 25 1 0.4409 -1.3190 -1.9631 26 1 2.1240 -2.8419 -2.9591 27 1 0.4953 -3.2636 -3.5439 28 1 3.2932 -4.2386 -0.7533 29 1 2.4091 -5.5482 0.0687 30 1 4.1519 -2.7958 0.4993 31 1 5.4807 -2.2959 2.5109 32 1 2.1162 -3.2305 4.9634 33 1 0.7861 -3.7203 2.9502 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116326542.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:48 Heat of formation + Delta-G solvation = 35.493477 kcal Electronic energy + Delta-G solvation = -18255.848598 eV Core-core repulsion = 15433.797686 eV Total energy + Delta-G solvation = -2822.050912 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.049 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.31440 -36.88786 -35.94280 -32.78415 -31.49177 -30.71435 -28.75290 -28.30168 -24.27242 -23.39303 -22.34526 -21.37759 -19.83262 -17.76413 -16.51717 -15.91840 -15.39618 -14.86295 -14.34450 -14.02017 -13.67545 -13.59178 -13.55560 -13.22646 -13.03798 -12.87710 -12.56192 -11.69835 -11.41055 -11.37765 -11.21466 -11.01052 -10.84562 -10.75862 -10.41095 -10.18265 -10.12038 -9.58277 -9.19903 -8.56784 -8.48966 -8.09960 -7.38545 -6.87156 -6.16646 -3.60363 1.56552 1.73906 2.32427 2.41015 3.03159 3.41491 3.42027 3.60094 4.01424 4.45472 4.97004 5.18428 5.23184 5.28471 5.34768 5.49082 5.63417 5.76832 5.79176 5.81610 5.88001 5.96239 6.10050 6.11574 6.29064 6.45176 6.59278 6.64022 6.67047 6.86435 7.11110 7.22341 8.01715 8.48727 8.92673 9.65267 10.08461 11.05700 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.014183 B = 0.007564 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.754972 B = 3700.631334 C = 5126.049024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.006 4.006 3 Si 1.063 2.937 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.367 4.367 8 H 0.060 0.940 9 N -0.589 5.589 10 C 0.155 3.845 11 C -0.093 4.093 12 S -0.297 6.297 13 C -0.085 4.085 14 C 0.207 3.793 15 H 0.049 0.951 16 C -0.029 4.029 17 C -0.066 4.066 18 C -0.121 4.121 19 C -0.040 4.040 20 Cl -0.091 7.091 21 C -0.116 4.116 22 C -0.098 4.098 23 H 0.271 0.729 24 H 0.035 0.965 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.529 -6.906 3.067 9.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.211 4.211 3 Si 0.893 3.107 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.496 4.496 8 H 0.078 0.922 9 N -0.313 5.313 10 C 0.028 3.972 11 C -0.244 4.244 12 S -0.070 6.070 13 C -0.236 4.236 14 C 0.099 3.901 15 H 0.067 0.933 16 C -0.031 4.031 17 C -0.085 4.085 18 C -0.140 4.140 19 C -0.066 4.066 20 Cl -0.063 7.063 21 C -0.135 4.135 22 C -0.117 4.117 23 H 0.082 0.918 24 H 0.053 0.947 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.146 0.854 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.034 -6.179 2.738 8.427 hybrid contribution 0.719 -0.417 0.574 1.010 sum 5.752 -6.597 3.312 9.358 Atomic orbital electron populations 1.70798 1.06641 1.30570 1.46193 1.26114 0.96621 1.01934 0.96448 0.83532 0.74934 0.75813 0.76469 1.20964 1.21585 1.21731 1.19933 0.95222 0.86302 1.48121 0.92229 1.43897 1.56554 1.05798 1.25009 1.21145 0.92056 0.98540 0.85471 1.24158 1.04692 0.93865 1.01644 1.86268 1.73856 1.16437 1.30457 1.23995 1.00845 1.02823 0.95929 1.19603 0.94662 0.88284 0.87536 0.93331 1.19711 0.93660 0.95656 0.94072 1.20886 0.93697 0.96210 0.97714 1.20910 1.00373 1.02012 0.90675 1.20768 0.92907 1.05660 0.87277 1.98325 1.73316 1.93973 1.40647 1.20841 0.92286 1.01194 0.99193 1.20894 0.99328 1.00071 0.91358 0.91827 0.94696 0.89683 0.90283 0.89156 0.90156 0.88976 0.85393 0.85705 0.85713 0.85791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.46 12.83 55.49 0.71 -24.74 16 2 C -0.01 -0.16 4.74 -17.43 -0.08 -0.24 16 3 Si 1.06 24.19 29.96 -169.99 -5.09 19.10 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.37 -9.11 7.90 -15.06 -0.12 -9.22 16 8 H 0.06 1.48 4.98 -52.49 -0.26 1.22 16 9 N -0.59 -13.15 2.44 -166.57 -0.41 -13.56 16 10 C 0.16 3.30 4.69 -3.72 -0.02 3.28 16 11 C -0.09 -1.69 6.68 37.55 0.25 -1.43 16 12 S -0.30 -5.21 22.29 -107.50 -2.40 -7.61 16 13 C -0.09 -1.46 5.72 37.28 0.21 -1.25 16 14 C 0.21 4.00 2.96 -69.03 -0.20 3.80 16 15 H 0.05 0.98 7.89 -51.93 -0.41 0.57 16 16 C -0.03 -0.53 4.04 -104.62 -0.42 -0.95 16 17 C -0.07 -1.17 6.71 -39.59 -0.27 -1.44 16 18 C -0.12 -1.97 9.83 -39.55 -0.39 -2.36 16 19 C -0.04 -0.63 6.32 -39.49 -0.25 -0.88 16 20 Cl -0.09 -1.29 28.96 -51.86 -1.50 -2.80 16 21 C -0.12 -1.85 9.83 -39.55 -0.39 -2.24 16 22 C -0.10 -1.67 9.67 -39.59 -0.38 -2.06 16 23 H 0.27 7.65 6.91 -40.82 -0.28 7.37 16 24 H 0.03 0.76 8.12 -51.93 -0.42 0.34 16 25 H 0.09 2.01 6.64 -51.93 -0.34 1.67 16 26 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16 27 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.08 1.39 7.00 -51.93 -0.36 1.02 16 29 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.13 2.27 6.63 -52.48 -0.35 1.92 16 31 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 32 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 33 H 0.12 1.96 7.95 -52.49 -0.42 1.55 16 LS Contribution 293.56 15.07 4.42 4.42 Total: -1.00 -26.97 293.56 -10.08 -37.05 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -3.76 Total: 3.14 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -2.06 Total: -15.00 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.31 Total: -38.30 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -5.09 Total: 19.10 kcal Atomic # 16 Polarization: -5.21 SS G_CDS: -2.40 Total: -7.61 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -1.50 Total: -2.80 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -26.97 -10.08 -37.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116326542.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.542 kcal (2) G-P(sol) polarization free energy of solvation -26.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds