Wall clock time and date at job start Tue Mar 31 2020 05:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00078 * 2 1 4 4 H 1.48496 * 109.47072 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47269 * 300.00336 * 3 2 1 6 6 H 1.48496 * 109.47165 * 60.00575 * 3 2 1 7 7 C 1.38816 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99394 * 193.10139 * 7 2 1 9 9 N 1.36934 * 120.00133 * 13.09733 * 7 2 1 10 10 C 1.46378 * 119.64797 * 33.39350 * 9 7 2 11 11 C 1.53239 * 109.48955 * 245.11302 * 10 9 7 12 12 S 1.81742 * 108.79717 * 302.34298 * 11 10 9 13 13 C 1.81746 * 102.30698 * 54.54083 * 12 11 10 14 14 C 1.46375 * 119.64760 * 213.41925 * 9 7 2 15 15 H 1.08998 * 109.46940 * 234.89636 * 14 9 7 16 16 C 1.50708 * 109.46776 * 354.88300 * 14 9 7 17 17 C 1.38236 * 119.98727 * 237.70699 * 16 14 9 18 18 C 1.38214 * 120.01339 * 179.72179 * 17 16 14 19 19 C 1.38356 * 119.98807 * 0.25846 * 18 17 16 20 20 Cl 1.73600 * 120.01572 * 179.97438 * 19 18 17 21 21 C 1.38352 * 119.96991 * 359.97438 * 19 18 17 22 22 C 1.38220 * 119.98773 * 0.02562 * 21 19 18 23 23 H 0.97001 * 119.99928 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46963 * 125.10660 * 10 9 7 25 25 H 1.08999 * 109.46333 * 5.11454 * 10 9 7 26 26 H 1.08994 * 109.58187 * 182.54964 * 11 10 9 27 27 H 1.08998 * 109.58612 * 62.13520 * 11 10 9 28 28 H 1.08999 * 109.57989 * 185.66720 * 13 12 11 29 29 H 1.08994 * 109.69780 * 65.31903 * 13 12 11 30 30 H 1.07996 * 119.99521 * 0.02562 * 17 16 14 31 31 H 1.08004 * 120.00737 * 180.27768 * 18 17 16 32 32 H 1.08001 * 120.00458 * 179.97438 * 21 19 18 33 33 H 1.07997 * 119.99155 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0691 -1.2144 0.2115 9 7 1.3523 -2.3725 -0.2698 10 6 0.2339 -2.3737 -1.2142 11 6 -1.0597 -2.7308 -0.4743 12 16 -0.8506 -4.3509 0.3222 13 6 0.6544 -4.1052 1.3110 14 6 1.7744 -3.6089 0.3903 15 1 1.9890 -4.3676 -0.3623 16 6 3.0145 -3.3451 1.2051 17 6 4.1676 -4.0678 0.9621 18 6 5.3069 -3.8223 1.7051 19 6 5.2915 -2.8568 2.6960 20 17 6.7219 -2.5484 3.6302 21 6 4.1357 -2.1373 2.9420 22 6 2.9971 -2.3837 2.1982 23 1 -0.4850 0.8401 0.0004 24 1 0.4199 -3.1095 -1.9966 25 1 0.1353 -1.3847 -1.6616 26 1 -1.8857 -2.7765 -1.1839 27 1 -1.2677 -1.9753 0.2834 28 1 0.9491 -5.0495 1.7686 29 1 0.4662 -3.3652 2.0888 30 1 4.1798 -4.8209 0.1881 31 1 6.2090 -4.3838 1.5121 32 1 4.1230 -1.3837 3.7156 33 1 2.0949 -1.8217 2.3899 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116326545.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:51 Heat of formation + Delta-G solvation = 40.153180 kcal Electronic energy + Delta-G solvation = -18306.327867 eV Core-core repulsion = 15484.479014 eV Total energy + Delta-G solvation = -2821.848853 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.049 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.28240 -36.78759 -35.87022 -32.68672 -31.20037 -30.64141 -28.65117 -28.56768 -24.32752 -23.15426 -22.35977 -21.28012 -19.75205 -17.38457 -16.36945 -15.71908 -15.37042 -14.72674 -14.52153 -13.80275 -13.72420 -13.44362 -13.25727 -13.01918 -12.83401 -12.69832 -12.25634 -11.63180 -11.28250 -11.25457 -11.04345 -11.00292 -10.93523 -10.69053 -10.40117 -10.21265 -10.11903 -9.85186 -9.08784 -8.67807 -8.49481 -8.05192 -7.22185 -6.64132 -6.01815 -3.51731 1.56252 1.76813 2.41347 2.65295 3.24590 3.34513 3.37655 3.37979 4.05885 4.33827 5.04406 5.21128 5.25519 5.29301 5.45395 5.68350 5.82964 5.86255 5.91891 6.05633 6.15319 6.24981 6.33068 6.41516 6.52979 6.60318 6.63543 6.75233 7.16395 7.22445 7.28609 7.32516 7.67445 8.26492 8.99923 9.58314 10.13049 11.04358 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.015323 B = 0.007431 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.907007 B = 3767.117661 C = 5193.044169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.013 3.987 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.256 4.256 8 H 0.072 0.928 9 N -0.587 5.587 10 C 0.176 3.824 11 C -0.073 4.073 12 S -0.326 6.326 13 C -0.080 4.080 14 C 0.209 3.791 15 H 0.054 0.946 16 C -0.052 4.052 17 C -0.103 4.103 18 C -0.126 4.126 19 C -0.038 4.038 20 Cl -0.093 7.093 21 C -0.127 4.127 22 C -0.049 4.049 23 H 0.256 0.744 24 H 0.016 0.984 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.110 0.890 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.399 -6.019 2.982 8.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.187 4.187 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.385 4.385 8 H 0.090 0.910 9 N -0.310 5.310 10 C 0.049 3.951 11 C -0.223 4.223 12 S -0.099 6.099 13 C -0.231 4.231 14 C 0.101 3.899 15 H 0.071 0.929 16 C -0.054 4.054 17 C -0.122 4.122 18 C -0.145 4.145 19 C -0.064 4.064 20 Cl -0.064 7.064 21 C -0.146 4.146 22 C -0.068 4.068 23 H 0.067 0.933 24 H 0.034 0.966 25 H 0.114 0.886 26 H 0.095 0.905 27 H 0.129 0.871 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.724 -6.767 2.944 8.762 hybrid contribution 1.132 2.126 0.286 2.425 sum 5.856 -4.641 3.230 8.140 Atomic orbital electron populations 1.69920 1.05268 1.25782 1.52863 1.25165 0.95287 0.98477 0.99801 0.86278 0.79753 0.83768 0.77475 1.19968 1.21386 1.21478 1.19267 0.91880 0.83628 1.43730 0.91008 1.44070 1.36852 1.03563 1.46505 1.20736 0.84236 1.00693 0.89440 1.24078 1.02252 0.93001 1.02936 1.86150 1.37032 1.25751 1.60962 1.23899 0.95616 1.03562 0.99982 1.19637 0.88444 0.90620 0.91231 0.92854 1.19900 0.94928 0.95208 0.95400 1.20929 0.91919 1.00082 0.99283 1.20799 0.98963 0.98506 0.96265 1.20838 0.87984 1.00511 0.97072 1.98326 1.39723 1.95445 1.72946 1.21010 0.91896 1.00344 1.01378 1.21154 0.98278 0.94774 0.92580 0.93349 0.96615 0.88601 0.90479 0.87140 0.89678 0.90070 0.85727 0.85828 0.85707 0.84078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.76 9.85 55.49 0.55 -22.21 16 2 C 0.01 0.31 4.93 -17.43 -0.09 0.23 16 3 Si 0.90 20.29 29.57 -169.99 -5.03 15.27 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.26 -6.15 6.91 -15.06 -0.10 -6.26 16 8 H 0.07 1.78 6.00 -52.49 -0.32 1.47 16 9 N -0.59 -13.06 2.79 -166.88 -0.47 -13.53 16 10 C 0.18 3.84 5.35 -3.98 -0.02 3.82 16 11 C -0.07 -1.51 6.45 37.28 0.24 -1.27 16 12 S -0.33 -6.28 22.29 -107.50 -2.40 -8.68 16 13 C -0.08 -1.47 5.81 37.28 0.22 -1.26 16 14 C 0.21 4.01 2.95 -69.02 -0.20 3.80 16 15 H 0.05 1.01 7.88 -51.93 -0.41 0.60 16 16 C -0.05 -0.93 3.88 -104.62 -0.41 -1.34 16 17 C -0.10 -1.62 9.67 -39.59 -0.38 -2.00 16 18 C -0.13 -1.87 9.83 -39.55 -0.39 -2.26 16 19 C -0.04 -0.58 6.32 -39.50 -0.25 -0.83 16 20 Cl -0.09 -1.29 28.96 -51.86 -1.50 -2.79 16 21 C -0.13 -2.11 9.83 -39.55 -0.39 -2.50 16 22 C -0.05 -0.90 6.76 -39.59 -0.27 -1.16 16 23 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 24 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.10 2.31 6.15 -51.93 -0.32 1.99 16 26 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.11 2.58 6.82 -51.93 -0.35 2.23 16 28 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.08 1.61 7.45 -51.93 -0.39 1.22 16 30 H 0.12 1.70 7.95 -52.49 -0.42 1.28 16 31 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 32 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 33 H 0.14 2.86 6.95 -52.49 -0.37 2.49 16 LS Contribution 291.53 15.07 4.39 4.39 Total: -1.00 -24.63 291.53 -10.31 -34.94 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -3.82 Total: 3.63 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -2.04 Total: -11.02 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.08 Total: -35.73 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.27 kcal Atomic # 16 Polarization: -6.28 SS G_CDS: -2.40 Total: -8.68 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -1.50 Total: -2.79 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -24.63 -10.31 -34.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116326545.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.093 kcal (2) G-P(sol) polarization free energy of solvation -24.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds