Wall clock time and date at job start Tue Mar 31 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 116.99614 * 2 1 4 4 O 1.20825 * 120.00477 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99968 * 179.97438 * 3 2 1 6 6 N 1.46491 * 109.47374 * 180.02562 * 5 3 2 7 7 C 1.36887 * 119.99950 * 274.01023 * 6 5 3 8 8 H 1.08009 * 120.00261 * 128.35442 * 7 6 5 9 9 C 1.39006 * 120.00059 * 308.35372 * 7 6 5 10 10 N 1.31399 * 119.99857 * 2.92718 * 9 7 6 11 11 Si 1.86803 * 120.00144 * 182.93215 * 9 7 6 12 12 H 1.48508 * 109.46935 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47198 * 119.99780 * 11 9 7 14 14 H 1.48497 * 109.46965 * 240.00058 * 11 9 7 15 15 C 1.34777 * 120.00247 * 94.01045 * 6 5 3 16 16 O 1.21738 * 119.99776 * 4.04120 * 15 6 5 17 17 C 1.46456 * 119.99982 * 184.04633 * 15 6 5 18 18 C 1.36769 * 125.46217 * 174.44969 * 17 15 6 19 19 C 1.37442 * 113.28019 * 180.26011 * 18 17 15 20 20 C 1.33847 * 115.10811 * 0.02562 * 19 18 17 21 21 C 1.50702 * 124.51506 * 179.97438 * 20 19 18 22 22 S 1.70611 * 110.97009 * 359.97438 * 20 19 18 23 23 H 1.09000 * 109.46750 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47395 * 299.99964 * 1 2 3 25 25 H 1.09003 * 109.46638 * 60.00315 * 1 2 3 26 26 H 1.08999 * 109.46891 * 59.99631 * 5 3 2 27 27 H 1.09001 * 109.47005 * 300.00486 * 5 3 2 28 28 H 0.97003 * 119.99490 * 180.02562 * 10 9 7 29 29 H 1.08005 * 123.35630 * 0.24430 * 18 17 15 30 30 H 1.08000 * 122.44499 * 180.02562 * 19 18 17 31 31 H 1.08999 * 109.46819 * 179.97438 * 21 20 19 32 32 H 1.09000 * 109.47080 * 300.00323 * 21 20 19 33 33 H 1.09005 * 109.46992 * 60.00112 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6798 0.0011 7 6 4.0966 3.3600 -1.1813 8 1 3.6022 4.3119 -1.3070 9 6 4.8498 2.8254 -2.2202 10 7 5.4038 1.6413 -2.0883 11 14 5.0744 3.7906 -3.8037 12 1 4.3546 5.0855 -3.7005 13 1 6.5203 4.0440 -4.0281 14 1 4.5263 3.0094 -4.9415 15 6 4.2506 3.3027 1.1657 16 8 4.2199 2.6790 2.2107 17 6 4.5795 4.7298 1.1739 18 6 4.7650 5.4949 2.2923 19 6 5.0592 6.8074 2.0099 20 6 5.1130 7.1098 0.7071 21 6 5.4170 8.4809 0.1606 22 16 4.7916 5.7361 -0.2523 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 3.9564 0.7807 -0.8891 27 1 3.9557 0.7810 0.8908 28 1 5.9297 1.2685 -2.8132 29 1 4.6876 5.1064 3.2971 30 1 5.2342 7.5412 2.7828 31 1 5.3983 8.4501 -0.9288 32 1 4.6685 9.1884 0.5174 33 1 6.4046 8.7958 0.4980 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120499268.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:16 Heat of formation + Delta-G solvation = -103.985395 kcal Electronic energy + Delta-G solvation = -20303.965975 eV Core-core repulsion = 17035.157640 eV Total energy + Delta-G solvation = -3268.808335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58735 -40.37225 -38.50273 -37.46400 -36.68632 -33.71564 -32.81652 -30.64368 -28.40628 -27.65365 -26.48728 -24.15342 -22.74550 -21.62949 -20.52324 -18.95998 -18.73461 -18.41770 -17.39388 -17.26736 -16.85837 -16.49357 -16.19475 -15.68125 -15.36710 -14.65538 -14.46891 -14.39645 -14.26238 -13.81170 -13.47532 -13.32743 -13.10856 -13.01919 -12.92743 -12.73354 -12.66573 -12.48861 -11.99945 -11.79384 -11.69630 -11.45807 -10.92381 -10.72361 -9.70808 -9.27503 -9.21409 -8.47059 -6.46208 -0.18342 0.91321 1.23669 1.35736 1.44108 1.48336 1.53396 1.58261 1.79965 2.21591 2.50106 2.82237 2.96171 4.03836 4.09591 4.19171 4.29200 4.31090 4.46148 4.51538 4.61246 4.63829 4.81536 4.83648 4.86154 5.17075 5.25700 5.30621 5.32758 5.46698 5.70918 5.79066 6.16729 6.80163 6.87708 7.24555 7.71605 8.54537 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.015311 B = 0.007765 C = 0.005875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.319471 B = 3604.913835 C = 4765.121621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.451 3.549 4 O -0.534 6.534 5 C 0.116 3.884 6 N -0.433 5.433 7 C -0.357 4.357 8 H 0.100 0.900 9 C 0.030 3.970 10 N -0.878 5.878 11 Si 0.960 3.040 12 H -0.242 1.242 13 H -0.262 1.262 14 H -0.269 1.269 15 C 0.545 3.455 16 O -0.624 6.624 17 C -0.281 4.281 18 C -0.084 4.084 19 C -0.169 4.169 20 C -0.262 4.262 21 C -0.076 4.076 22 S 0.286 5.714 23 H 0.139 0.861 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.148 0.852 27 H 0.098 0.902 28 H 0.285 0.715 29 H 0.136 0.864 30 H 0.156 0.844 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.757 5.759 -1.833 6.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.294 3.706 4 O -0.423 6.423 5 C -0.009 4.009 6 N -0.151 5.151 7 C -0.489 4.489 8 H 0.117 0.883 9 C -0.177 4.177 10 N -0.512 5.512 11 Si 0.780 3.220 12 H -0.165 1.165 13 H -0.186 1.186 14 H -0.194 1.194 15 C 0.337 3.663 16 O -0.513 6.513 17 C -0.401 4.401 18 C -0.119 4.119 19 C -0.198 4.198 20 C -0.381 4.381 21 C -0.134 4.134 22 S 0.558 5.442 23 H 0.157 0.843 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.165 0.835 27 H 0.116 0.884 28 H 0.096 0.904 29 H 0.154 0.846 30 H 0.173 0.827 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.950 5.386 -2.998 6.465 hybrid contribution -0.175 0.078 1.197 1.212 sum -2.125 5.463 -1.800 6.132 Atomic orbital electron populations 1.23529 0.75173 1.05719 1.02081 1.86514 1.24946 1.32676 1.84124 1.25011 0.93266 0.81364 0.70914 1.90553 1.67565 1.37517 1.46674 1.21174 0.85309 0.87418 1.07014 1.42940 1.57368 1.09261 1.05532 1.19565 1.32643 1.04987 0.91662 0.88311 1.26413 0.92409 0.96426 1.02493 1.69643 1.30240 1.16375 1.34972 0.85335 0.79672 0.80013 0.76963 1.16510 1.18612 1.19397 1.17861 0.78161 0.86590 0.83709 1.90601 1.59638 1.67705 1.33331 1.24425 1.18451 0.97723 0.99511 1.20770 0.99248 0.93774 0.98110 1.19853 1.07597 0.95631 0.96722 1.25897 1.06180 1.05599 1.00427 1.20387 1.03184 0.88910 1.00964 1.84122 1.61135 0.93527 1.05380 0.84290 0.92638 0.92261 0.83494 0.88405 0.90401 0.84622 0.82666 0.91033 0.89396 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.56 113.37 1.20 2.00 16 2 O -0.37 -14.13 10.57 -51.44 -0.54 -14.67 16 3 C 0.45 21.10 8.00 71.24 0.57 21.67 16 4 O -0.53 -27.54 16.12 21.97 0.35 -27.19 16 5 C 0.12 5.71 5.71 85.64 0.49 6.20 16 6 N -0.43 -22.84 1.98 -644.37 -1.27 -24.11 16 7 C -0.36 -17.87 6.68 84.09 0.56 -17.31 16 8 H 0.10 4.90 5.38 -15.78 -0.08 4.81 16 9 C 0.03 1.42 5.38 84.94 0.46 1.87 16 10 N -0.88 -43.03 11.16 21.67 0.24 -42.79 16 11 Si 0.96 36.18 29.55 68.60 2.03 38.21 16 12 H -0.24 -8.56 7.11 99.48 0.71 -7.85 16 13 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 14 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 15 C 0.54 29.47 7.60 86.38 0.66 30.13 16 16 O -0.62 -36.07 16.35 -4.47 -0.07 -36.14 16 17 C -0.28 -13.20 6.31 24.07 0.15 -13.05 16 18 C -0.08 -3.45 10.02 21.74 0.22 -3.23 16 19 C -0.17 -5.59 9.99 21.08 0.21 -5.38 16 20 C -0.26 -8.37 6.28 24.69 0.16 -8.22 16 21 C -0.08 -1.69 10.33 71.24 0.74 -0.95 16 22 S 0.29 11.26 18.28 -56.49 -1.03 10.23 16 23 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 24 H 0.05 1.60 8.13 -2.39 -0.02 1.58 16 25 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 26 H 0.15 7.27 5.65 -2.39 -0.01 7.26 16 27 H 0.10 4.81 7.25 -2.39 -0.02 4.79 16 28 H 0.29 12.89 8.31 -92.71 -0.77 12.12 16 29 H 0.14 5.43 8.06 -2.91 -0.02 5.40 16 30 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 31 H 0.07 1.47 8.11 -2.39 -0.02 1.45 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -65.80 303.69 6.17 -59.63 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 1.07 Total: 23.12 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 5.40 Total: 13.73 kcal Atomic # 7 Polarization: -65.87 SS G_CDS: -1.03 Total: -66.91 kcal Atomic # 8 Polarization: -77.74 SS G_CDS: -0.26 Total: -78.01 kcal Atomic # 14 Polarization: 36.18 SS G_CDS: 2.03 Total: 38.21 kcal Atomic # 16 Polarization: 11.26 SS G_CDS: -1.03 Total: 10.23 kcal Total: -65.80 6.17 -59.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120499268.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.356 kcal (2) G-P(sol) polarization free energy of solvation -65.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds