Wall clock time and date at job start Tue Mar 31 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34229 * 117.00518 * 2 1 4 4 O 1.20831 * 119.99678 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00432 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47276 * 179.97438 * 5 3 2 7 7 C 1.36879 * 120.00088 * 264.42933 * 6 5 3 8 8 H 1.08000 * 119.99756 * 132.02752 * 7 6 5 9 9 C 1.39003 * 120.00402 * 312.02178 * 7 6 5 10 10 N 1.31392 * 120.00569 * 170.32357 * 9 7 6 11 11 Si 1.86811 * 119.99525 * 350.32627 * 9 7 6 12 12 H 1.48497 * 109.46995 * 91.67626 * 11 9 7 13 13 H 1.48502 * 109.46650 * 211.67331 * 11 9 7 14 14 H 1.48497 * 109.47280 * 331.67169 * 11 9 7 15 15 C 1.34784 * 119.99530 * 84.42708 * 6 5 3 16 16 O 1.21746 * 119.99915 * 3.69564 * 15 6 5 17 17 C 1.46455 * 119.99527 * 183.69133 * 15 6 5 18 18 S 1.75830 * 125.46407 * 353.11982 * 17 15 6 19 19 C 1.70613 * 91.56757 * 180.02562 * 18 17 15 20 20 C 1.33851 * 110.96997 * 359.74945 * 19 18 17 21 21 C 1.36769 * 125.45713 * 173.14176 * 17 15 6 22 22 C 1.50698 * 123.36430 * 359.95702 * 21 17 15 23 23 H 1.09000 * 109.46970 * 60.00195 * 1 2 3 24 24 H 1.09001 * 109.47692 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47242 * 300.00426 * 1 2 3 26 26 H 1.09001 * 109.46961 * 59.99547 * 5 3 2 27 27 H 1.08997 * 109.46854 * 300.00101 * 5 3 2 28 28 H 0.96999 * 120.00022 * 179.97438 * 10 9 7 29 29 H 1.07999 * 124.51632 * 179.97438 * 19 18 17 30 30 H 1.07998 * 122.44762 * 180.23141 * 20 19 18 31 31 H 1.08994 * 109.47254 * 90.00154 * 22 21 17 32 32 H 1.09005 * 109.47004 * 210.00319 * 22 21 17 33 33 H 1.09002 * 109.47192 * 329.99710 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9818 2.6797 -0.0011 7 6 4.2858 3.3031 -1.1811 8 1 3.8673 4.2738 -1.4025 9 6 5.1331 2.6869 -2.0946 10 7 5.2760 3.1888 -3.3005 11 14 6.0688 1.1450 -1.6078 12 1 5.2706 -0.0535 -1.9703 13 1 7.3694 1.1086 -2.3236 14 1 6.3103 1.1544 -0.1426 15 6 4.0646 3.3583 1.1605 16 8 3.8597 2.7863 2.2156 17 6 4.4012 4.7836 1.1534 18 16 4.8900 5.7093 -0.2592 19 6 5.0472 7.1320 0.6693 20 6 4.7417 6.9029 1.9522 21 6 4.3860 5.6078 2.2448 22 6 4.0109 5.1439 3.6286 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 3.9557 0.7808 -0.8908 27 1 3.9564 0.7805 0.8891 28 1 5.8676 2.7589 -3.9378 29 1 5.3492 8.0906 0.2740 30 1 4.7755 7.6781 2.7033 31 1 4.9036 4.8002 4.1510 32 1 3.5629 5.9706 4.1800 33 1 3.2947 4.3254 3.5557 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120602724.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:52 Heat of formation + Delta-G solvation = -74.905997 kcal Electronic energy + Delta-G solvation = -20620.087977 eV Core-core repulsion = 17352.540620 eV Total energy + Delta-G solvation = -3267.547358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.09743 -38.86907 -37.13640 -35.88508 -34.93740 -32.31840 -30.25951 -29.32741 -27.51830 -26.27870 -24.95306 -22.64913 -21.28243 -19.93564 -18.62727 -17.47393 -17.34345 -16.73385 -16.02510 -15.70052 -15.34829 -14.94851 -14.35453 -14.24277 -13.72036 -13.25312 -13.19868 -12.90954 -12.49196 -12.41816 -12.18965 -11.91919 -11.66905 -11.63884 -11.37352 -11.25044 -11.09056 -10.65779 -10.41128 -10.35894 -9.99865 -9.70674 -9.18643 -8.89647 -8.12636 -7.86771 -7.47653 -6.73524 -4.55101 1.42595 2.59986 2.77768 2.84649 2.94361 3.06709 3.10081 3.11867 3.22889 3.86574 4.11928 4.19740 4.71680 5.31547 5.38293 5.40125 5.56806 5.58457 5.73736 5.75206 5.88642 5.92219 6.07490 6.22352 6.28660 6.60641 6.72913 6.78159 7.04269 7.13471 7.21908 7.76570 7.88350 8.31213 8.62085 8.98615 9.35191 10.30781 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.008770 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.513245 B = 3192.080561 C = 4326.929124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.449 3.551 4 O -0.490 6.490 5 C 0.111 3.889 6 N -0.454 5.454 7 C -0.350 4.350 8 H 0.118 0.882 9 C 0.080 3.920 10 N -0.838 5.838 11 Si 0.870 3.130 12 H -0.264 1.264 13 H -0.277 1.277 14 H -0.252 1.252 15 C 0.574 3.426 16 O -0.575 6.575 17 C -0.247 4.247 18 S 0.326 5.674 19 C -0.323 4.323 20 C -0.158 4.158 21 C -0.061 4.061 22 C -0.091 4.091 23 H 0.059 0.941 24 H 0.095 0.905 25 H 0.058 0.942 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.283 0.717 29 H 0.147 0.853 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.631 -1.376 3.883 4.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.289 3.711 4 O -0.374 6.374 5 C -0.014 4.014 6 N -0.176 5.176 7 C -0.483 4.483 8 H 0.135 0.865 9 C -0.132 4.132 10 N -0.470 5.470 11 Si 0.696 3.304 12 H -0.191 1.191 13 H -0.202 1.202 14 H -0.175 1.175 15 C 0.366 3.634 16 O -0.460 6.460 17 C -0.368 4.368 18 S 0.602 5.398 19 C -0.460 4.460 20 C -0.189 4.189 21 C -0.077 4.077 22 C -0.149 4.149 23 H 0.078 0.922 24 H 0.113 0.887 25 H 0.077 0.923 26 H 0.127 0.873 27 H 0.131 0.869 28 H 0.094 0.906 29 H 0.164 0.836 30 H 0.137 0.863 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.628 -1.583 2.630 3.475 hybrid contribution 0.005 -0.090 1.369 1.372 sum -1.623 -1.674 3.999 4.629 Atomic orbital electron populations 1.23143 0.77443 1.02885 1.02291 1.86516 1.22735 1.34405 1.84893 1.24719 0.92822 0.81244 0.72274 1.90629 1.66599 1.36271 1.43942 1.21358 0.86834 0.88135 1.05070 1.43142 1.59330 1.08463 1.06652 1.18989 1.29510 1.04878 0.94894 0.86533 1.25526 0.94804 0.98245 0.94619 1.69639 1.34030 1.39715 1.03579 0.86955 0.80245 0.82247 0.80999 1.19053 1.20236 1.17500 1.17135 0.78043 0.85145 0.83107 1.90642 1.54958 1.69455 1.30951 1.24271 1.16075 0.98101 0.98341 1.84975 1.56883 0.92611 1.05313 1.26545 1.08970 1.08767 1.01685 1.19557 1.06788 0.96266 0.96332 1.19261 1.00266 0.92454 0.95710 1.20511 1.01919 1.01153 0.91335 0.92192 0.88670 0.92288 0.87315 0.86939 0.90613 0.83561 0.86288 0.91842 0.93018 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.57 16 2 O -0.37 -6.60 10.56 -39.26 -0.41 -7.02 16 3 C 0.45 9.59 7.99 36.00 0.29 9.88 16 4 O -0.49 -11.83 16.05 -18.75 -0.30 -12.13 16 5 C 0.11 2.39 4.43 -5.19 -0.02 2.37 16 6 N -0.45 -10.93 1.59 -117.66 -0.19 -11.11 16 7 C -0.35 -8.68 7.43 -15.02 -0.11 -8.79 16 8 H 0.12 3.05 5.42 -30.18 -0.16 2.89 16 9 C 0.08 1.94 5.41 -17.46 -0.09 1.85 16 10 N -0.84 -20.90 13.96 55.50 0.77 -20.13 16 11 Si 0.87 18.35 24.85 -169.99 -4.22 14.12 16 12 H -0.26 -5.23 6.75 56.52 0.38 -4.85 16 13 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 14 H -0.25 -5.37 7.08 56.52 0.40 -4.97 16 15 C 0.57 14.02 7.38 -12.95 -0.10 13.93 16 16 O -0.58 -14.41 14.00 5.15 0.07 -14.34 16 17 C -0.25 -5.58 6.30 -36.81 -0.23 -5.81 16 18 S 0.33 6.73 18.33 -107.50 -1.97 4.76 16 19 C -0.32 -5.77 10.92 29.19 0.32 -5.45 16 20 C -0.16 -2.85 9.97 -41.41 -0.41 -3.27 16 21 C -0.06 -1.24 5.91 -105.44 -0.62 -1.86 16 22 C -0.09 -1.64 9.47 36.00 0.34 -1.30 16 23 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 24 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 26 H 0.11 2.24 4.00 -51.93 -0.21 2.03 16 27 H 0.11 2.25 7.54 -51.93 -0.39 1.86 16 28 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 29 H 0.15 2.20 8.06 -52.49 -0.42 1.78 16 30 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.71 6.20 -51.93 -0.32 1.38 16 LS Contribution 294.31 15.07 4.44 4.44 Total: -1.00 -28.98 294.31 -4.59 -33.57 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -3.20 Total: 4.72 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 0.42 Total: 3.12 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 0.59 Total: -31.24 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.64 Total: -33.48 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -4.22 Total: 14.12 kcal Atomic # 16 Polarization: 6.73 SS G_CDS: -1.97 Total: 4.76 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.98 -4.59 -33.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120602724.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.332 kcal (2) G-P(sol) polarization free energy of solvation -28.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds