Wall clock time and date at job start Tue Mar 31 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34229 * 117.00518 * 2 1 4 4 O 1.20831 * 119.99678 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00432 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47276 * 179.97438 * 5 3 2 7 7 C 1.36879 * 120.00088 * 264.42933 * 6 5 3 8 8 H 1.08000 * 119.99756 * 132.02752 * 7 6 5 9 9 C 1.39003 * 120.00402 * 312.02178 * 7 6 5 10 10 N 1.31392 * 120.00569 * 170.32357 * 9 7 6 11 11 Si 1.86811 * 119.99525 * 350.32627 * 9 7 6 12 12 H 1.48497 * 109.46995 * 91.67626 * 11 9 7 13 13 H 1.48502 * 109.46650 * 211.67331 * 11 9 7 14 14 H 1.48497 * 109.47280 * 331.67169 * 11 9 7 15 15 C 1.34784 * 119.99530 * 84.42708 * 6 5 3 16 16 O 1.21746 * 119.99915 * 3.69564 * 15 6 5 17 17 C 1.46455 * 119.99527 * 183.69133 * 15 6 5 18 18 S 1.75830 * 125.46407 * 353.11982 * 17 15 6 19 19 C 1.70613 * 91.56757 * 180.02562 * 18 17 15 20 20 C 1.33851 * 110.96997 * 359.74945 * 19 18 17 21 21 C 1.36769 * 125.45713 * 173.14176 * 17 15 6 22 22 C 1.50698 * 123.36430 * 359.95702 * 21 17 15 23 23 H 1.09000 * 109.46970 * 60.00195 * 1 2 3 24 24 H 1.09001 * 109.47692 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47242 * 300.00426 * 1 2 3 26 26 H 1.09001 * 109.46961 * 59.99547 * 5 3 2 27 27 H 1.08997 * 109.46854 * 300.00101 * 5 3 2 28 28 H 0.96999 * 120.00022 * 179.97438 * 10 9 7 29 29 H 1.07999 * 124.51632 * 179.97438 * 19 18 17 30 30 H 1.07998 * 122.44762 * 180.23141 * 20 19 18 31 31 H 1.08994 * 109.47254 * 90.00154 * 22 21 17 32 32 H 1.09005 * 109.47004 * 210.00319 * 22 21 17 33 33 H 1.09002 * 109.47192 * 329.99710 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9818 2.6797 -0.0011 7 6 4.2858 3.3031 -1.1811 8 1 3.8673 4.2738 -1.4025 9 6 5.1331 2.6869 -2.0946 10 7 5.2760 3.1888 -3.3005 11 14 6.0688 1.1450 -1.6078 12 1 5.2706 -0.0535 -1.9703 13 1 7.3694 1.1086 -2.3236 14 1 6.3103 1.1544 -0.1426 15 6 4.0646 3.3583 1.1605 16 8 3.8597 2.7863 2.2156 17 6 4.4012 4.7836 1.1534 18 16 4.8900 5.7093 -0.2592 19 6 5.0472 7.1320 0.6693 20 6 4.7417 6.9029 1.9522 21 6 4.3860 5.6078 2.2448 22 6 4.0109 5.1439 3.6286 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 3.9557 0.7808 -0.8908 27 1 3.9564 0.7805 0.8891 28 1 5.8676 2.7589 -3.9378 29 1 5.3492 8.0906 0.2740 30 1 4.7755 7.6781 2.7033 31 1 4.9036 4.8002 4.1510 32 1 3.5629 5.9706 4.1800 33 1 3.2947 4.3254 3.5557 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120602724.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:51 Heat of formation + Delta-G solvation = -92.419958 kcal Electronic energy + Delta-G solvation = -20620.847440 eV Core-core repulsion = 17352.540620 eV Total energy + Delta-G solvation = -3268.306820 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.75913 -40.56044 -38.68921 -37.50300 -36.73763 -34.14975 -31.80975 -30.89003 -28.94745 -27.78689 -26.71039 -24.15746 -22.87670 -21.64283 -20.35261 -19.14103 -18.95944 -18.35793 -17.56765 -17.32235 -17.02858 -16.63589 -15.95852 -15.91341 -15.32707 -14.83138 -14.65703 -14.50609 -14.10378 -13.96988 -13.79199 -13.51491 -13.24036 -13.00776 -12.92275 -12.81458 -12.69057 -12.26737 -12.03041 -11.83571 -11.71428 -11.36562 -10.86248 -10.69640 -9.91053 -9.46005 -9.07561 -8.54957 -6.42170 -0.16213 1.01128 1.10595 1.18626 1.33659 1.40761 1.46731 1.56902 1.73119 2.13747 2.37388 2.49904 2.91243 3.84509 3.90334 4.08284 4.17666 4.25944 4.29956 4.30187 4.47467 4.63514 4.63882 4.79048 4.87212 5.15074 5.22735 5.25543 5.30440 5.61081 5.74336 5.95806 6.01478 6.69137 6.78332 7.15325 7.53640 8.51430 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.008770 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.513245 B = 3192.080561 C = 4326.929124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.453 3.547 4 O -0.526 6.526 5 C 0.103 3.897 6 N -0.462 5.462 7 C -0.358 4.358 8 H 0.097 0.903 9 C 0.051 3.949 10 N -0.870 5.870 11 Si 0.911 3.089 12 H -0.240 1.240 13 H -0.271 1.271 14 H -0.258 1.258 15 C 0.563 3.437 16 O -0.594 6.594 17 C -0.293 4.293 18 S 0.291 5.709 19 C -0.298 4.298 20 C -0.160 4.160 21 C -0.057 4.057 22 C -0.088 4.088 23 H 0.058 0.942 24 H 0.142 0.858 25 H 0.057 0.943 26 H 0.118 0.882 27 H 0.125 0.875 28 H 0.289 0.711 29 H 0.182 0.818 30 H 0.157 0.843 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.434 -1.268 4.848 5.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.295 3.705 4 O -0.414 6.414 5 C -0.022 4.022 6 N -0.183 5.183 7 C -0.490 4.490 8 H 0.114 0.886 9 C -0.159 4.159 10 N -0.503 5.503 11 Si 0.734 3.266 12 H -0.165 1.165 13 H -0.197 1.197 14 H -0.182 1.182 15 C 0.355 3.645 16 O -0.481 6.481 17 C -0.413 4.413 18 S 0.566 5.434 19 C -0.435 4.435 20 C -0.191 4.191 21 C -0.073 4.073 22 C -0.146 4.146 23 H 0.076 0.924 24 H 0.160 0.840 25 H 0.076 0.924 26 H 0.136 0.864 27 H 0.143 0.857 28 H 0.099 0.901 29 H 0.199 0.801 30 H 0.175 0.825 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.448 -1.526 3.571 4.144 hybrid contribution -0.141 -0.026 1.150 1.159 sum -1.589 -1.552 4.721 5.217 Atomic orbital electron populations 1.23563 0.74823 1.05915 1.02196 1.86487 1.25164 1.32223 1.84037 1.24606 0.92822 0.81643 0.71444 1.90610 1.67315 1.37632 1.45851 1.21490 0.87446 0.87214 1.06028 1.43204 1.59539 1.09258 1.06303 1.18905 1.29961 1.04938 0.95181 0.88624 1.25989 0.95073 1.00508 0.94301 1.69691 1.35023 1.41199 1.04397 0.86314 0.79699 0.80391 0.80220 1.16513 1.19666 1.18238 1.17521 0.77793 0.86118 0.83020 1.90601 1.56052 1.70147 1.31307 1.24365 1.19174 0.97944 0.99820 1.84983 1.58010 0.94363 1.06067 1.26749 1.07042 1.08638 1.01047 1.19881 1.05937 0.96034 0.97211 1.19771 0.98452 0.93135 0.95980 1.20525 1.01837 1.01519 0.90756 0.92358 0.84039 0.92430 0.86449 0.85692 0.90097 0.80109 0.82507 0.90854 0.89632 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.92 16 2 O -0.36 -12.59 10.56 -51.41 -0.54 -13.13 16 3 C 0.45 19.42 7.99 71.23 0.57 19.99 16 4 O -0.53 -25.96 16.05 21.95 0.35 -25.61 16 5 C 0.10 4.43 4.43 85.63 0.38 4.81 16 6 N -0.46 -22.66 1.59 -644.35 -1.02 -23.68 16 7 C -0.36 -18.24 7.43 84.09 0.62 -17.62 16 8 H 0.10 5.24 5.42 -17.10 -0.09 5.15 16 9 C 0.05 2.48 5.41 84.94 0.46 2.94 16 10 N -0.87 -44.11 13.96 21.67 0.30 -43.81 16 11 Si 0.91 37.27 24.85 68.60 1.70 38.97 16 12 H -0.24 -8.85 6.75 99.48 0.67 -8.17 16 13 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 14 H -0.26 -10.80 7.08 99.48 0.70 -10.10 16 15 C 0.56 28.10 7.38 86.38 0.64 28.74 16 16 O -0.59 -30.38 14.00 -4.50 -0.06 -30.45 16 17 C -0.29 -13.35 6.30 24.07 0.15 -13.20 16 18 S 0.29 12.08 18.33 -56.49 -1.04 11.05 16 19 C -0.30 -9.88 10.92 66.82 0.73 -9.15 16 20 C -0.16 -5.29 9.97 21.09 0.21 -5.08 16 21 C -0.06 -2.22 5.91 -20.40 -0.12 -2.34 16 22 C -0.09 -3.04 9.47 71.24 0.67 -2.37 16 23 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 24 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 26 H 0.12 4.77 4.00 -2.39 -0.01 4.76 16 27 H 0.13 4.99 7.54 -2.39 -0.02 4.97 16 28 H 0.29 13.46 8.31 -92.71 -0.77 12.69 16 29 H 0.18 4.72 8.06 -2.91 -0.02 4.69 16 30 H 0.16 4.02 8.06 -2.91 -0.02 3.99 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 33 H 0.06 2.33 6.20 -2.39 -0.01 2.32 16 Total: -1.00 -63.97 294.31 6.24 -57.73 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 1.03 Total: 20.27 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 5.51 Total: 8.66 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: -0.72 Total: -67.49 kcal Atomic # 8 Polarization: -68.93 SS G_CDS: -0.25 Total: -69.18 kcal Atomic # 14 Polarization: 37.27 SS G_CDS: 1.70 Total: 38.97 kcal Atomic # 16 Polarization: 12.08 SS G_CDS: -1.04 Total: 11.05 kcal Total: -63.97 6.24 -57.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120602724.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.694 kcal (2) G-P(sol) polarization free energy of solvation -63.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds