Wall clock time and date at job start Tue Mar 31 2020 05:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38433 * 119.83910 * 2 1 4 4 C 1.37892 * 120.18095 * 180.02562 * 3 2 1 5 5 C 1.39682 * 119.85607 * 359.97438 * 4 3 2 6 6 C 1.47666 * 120.15782 * 179.97438 * 5 4 3 7 7 O 1.21601 * 119.99972 * 180.02562 * 6 5 4 8 8 N 1.34776 * 120.00260 * 0.02562 * 6 5 4 9 9 C 1.36878 * 120.00025 * 180.02562 * 8 6 5 10 10 H 1.07999 * 120.00410 * 0.02562 * 9 8 6 11 11 C 1.39043 * 119.99514 * 180.02562 * 9 8 6 12 12 N 1.31363 * 120.00502 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99665 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47251 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47090 * 119.99790 * 13 11 9 16 16 H 1.48505 * 109.46928 * 239.99803 * 13 11 9 17 17 C 1.39739 * 119.68259 * 359.97438 * 5 4 3 18 18 Br 1.89100 * 120.08924 * 179.97438 * 17 5 4 19 19 C 1.38088 * 119.81410 * 0.25133 * 17 5 4 20 20 H 1.08993 * 109.47117 * 89.99848 * 1 2 3 21 21 H 1.08997 * 109.46968 * 210.00187 * 1 2 3 22 22 H 1.08998 * 109.47099 * 329.99980 * 1 2 3 23 23 H 1.07997 * 119.90695 * 0.02562 * 3 2 1 24 24 H 1.08004 * 120.06937 * 179.97438 * 4 3 2 25 25 H 0.96997 * 119.99710 * 359.97438 * 8 6 5 26 26 H 0.97001 * 120.00062 * 179.97438 * 12 11 9 27 27 H 1.08000 * 119.92731 * 179.72552 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2008 0.0000 4 6 3.5746 1.2090 -0.0005 5 6 4.2772 0.0018 -0.0005 6 6 5.7539 0.0028 -0.0017 7 8 6.3626 -1.0499 -0.0021 8 7 6.4270 1.1704 -0.0022 9 6 7.7958 1.1713 -0.0038 10 1 8.3365 0.2364 -0.0050 11 6 8.4901 2.3760 -0.0038 12 7 7.8325 3.5132 -0.0028 13 14 10.3582 2.3773 -0.0067 14 1 10.8541 0.9776 -0.0081 15 1 10.8508 3.0787 -1.2193 16 1 10.8545 3.0766 1.2057 17 6 3.5760 -1.2069 0.0006 18 35 4.5155 -2.8480 -0.0002 19 6 2.1952 -1.1996 -0.0036 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.6516 2.1337 0.0004 24 1 4.1102 2.1469 -0.0010 25 1 5.9414 2.0101 -0.0022 26 1 8.3170 4.3536 -0.0024 27 1 1.6514 -2.1327 -0.0073 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129525781.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:54 Heat of formation + Delta-G solvation = -5.833617 kcal Electronic energy + Delta-G solvation = -14180.996435 eV Core-core repulsion = 11564.139794 eV Total energy + Delta-G solvation = -2616.856641 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.42695 -37.53219 -34.13264 -32.68636 -31.92450 -30.94253 -28.84779 -27.38707 -24.87115 -22.29035 -21.63308 -19.49922 -18.18506 -16.71630 -15.36386 -14.90391 -14.64214 -14.11875 -14.01115 -13.79574 -13.34995 -13.21539 -12.61108 -12.27569 -11.93880 -11.66184 -11.33815 -11.15858 -10.84124 -10.42009 -10.29767 -10.27142 -9.84907 -9.61241 -8.54242 -8.27015 -8.03457 -7.76077 -6.57127 -3.87875 1.18933 1.47757 2.24733 3.11588 3.21650 3.29297 3.55211 4.08135 4.41303 4.79124 4.94610 4.99525 5.28141 5.29390 5.35288 5.56972 5.63810 5.80137 5.96061 6.01212 6.17822 6.51074 6.59282 6.67998 7.04465 7.42683 7.95292 8.50745 9.06444 9.41634 9.98721 10.59939 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.022587 B = 0.006423 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.344412 B = 4358.238033 C = 5582.437518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.090 4.090 3 C -0.112 4.112 4 C -0.097 4.097 5 C -0.077 4.077 6 C 0.455 3.545 7 O -0.566 6.566 8 N -0.543 5.543 9 C -0.288 4.288 10 H 0.110 0.890 11 C 0.022 3.978 12 N -0.890 5.890 13 Si 0.934 3.066 14 H -0.265 1.265 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.056 4.056 18 Br -0.023 7.023 19 C -0.101 4.101 20 H 0.069 0.931 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.126 0.874 24 H 0.134 0.866 25 H 0.391 0.609 26 H 0.275 0.725 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.961 -5.281 -0.016 13.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.092 4.092 3 C -0.130 4.130 4 C -0.117 4.117 5 C -0.083 4.083 6 C 0.242 3.758 7 O -0.450 6.450 8 N -0.178 5.178 9 C -0.418 4.418 10 H 0.128 0.872 11 C -0.181 4.181 12 N -0.530 5.530 13 Si 0.760 3.240 14 H -0.189 1.189 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.137 4.137 18 Br 0.064 6.936 19 C -0.121 4.121 20 H 0.088 0.912 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.144 0.856 24 H 0.152 0.848 25 H 0.226 0.774 26 H 0.085 0.915 27 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.064 -6.404 -0.016 13.658 hybrid contribution 0.402 1.155 -0.006 1.223 sum -11.662 -5.249 -0.022 12.789 Atomic orbital electron populations 1.20750 0.90933 1.02686 1.02232 1.19895 0.95989 0.92697 1.00613 1.21012 0.93972 0.97539 1.00511 1.21413 0.94201 0.97477 0.98585 1.20200 0.95915 0.92151 1.00046 1.17654 0.85799 0.85292 0.87017 1.90786 1.68494 1.29739 1.56015 1.41933 1.07303 1.06767 1.61808 1.19903 0.81075 0.94757 1.46018 0.87248 1.25383 1.01231 0.94557 0.96968 1.69595 1.36981 0.97780 1.48644 0.85727 0.81559 0.78853 0.77851 1.18949 1.20555 1.20558 1.21860 0.93980 0.92689 1.05171 1.96652 1.78265 1.21604 1.97097 1.20841 0.91739 0.98207 1.01284 0.91223 0.91610 0.91493 0.85589 0.84829 0.77379 0.91516 0.85356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.00 36.00 0.36 -0.66 15 2 C -0.09 -1.20 5.89 -104.53 -0.62 -1.82 15 3 C -0.11 -1.58 9.68 -39.64 -0.38 -1.96 15 4 C -0.10 -1.67 9.54 -39.17 -0.37 -2.05 15 5 C -0.08 -1.59 5.88 -104.95 -0.62 -2.21 15 6 C 0.46 11.30 7.71 -12.41 -0.10 11.20 15 7 O -0.57 -15.36 13.05 5.28 0.07 -15.30 15 8 N -0.54 -13.95 5.23 -11.89 -0.06 -14.01 15 9 C -0.29 -7.93 9.68 -15.00 -0.15 -8.08 15 10 H 0.11 3.15 7.15 -52.49 -0.38 2.77 15 11 C 0.02 0.57 5.50 -17.45 -0.10 0.47 15 12 N -0.89 -23.57 13.05 55.50 0.72 -22.84 15 13 Si 0.93 20.59 29.55 -169.99 -5.02 15.57 15 14 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 15 H -0.28 -6.07 7.11 56.52 0.40 -5.66 15 16 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 17 C -0.06 -1.04 6.26 -39.08 -0.24 -1.29 15 18 Br -0.02 -0.43 30.40 -68.01 -2.07 -2.50 15 19 C -0.10 -1.51 9.42 -39.61 -0.37 -1.88 15 20 H 0.07 0.58 8.14 -51.93 -0.42 0.16 15 21 H 0.06 0.55 8.08 -51.93 -0.42 0.13 15 22 H 0.07 0.54 8.08 -51.93 -0.42 0.12 15 23 H 0.13 1.40 8.06 -52.49 -0.42 0.98 15 24 H 0.13 2.26 6.41 -52.48 -0.34 1.92 15 25 H 0.39 9.52 5.93 -40.82 -0.24 9.28 15 26 H 0.27 6.82 8.31 -40.82 -0.34 6.48 15 27 H 0.13 1.62 8.06 -52.49 -0.42 1.19 15 LS Contribution 260.37 15.07 3.92 3.92 Total: -1.00 -29.97 260.37 -7.22 -37.18 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -2.20 Total: 6.24 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -2.58 Total: -8.26 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.66 Total: -36.86 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.07 Total: -15.30 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.07 Total: -2.50 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.97 -7.22 -37.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129525781.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.351 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds