Wall clock time and date at job start Tue Mar 31 2020 05:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38259 * 119.99503 * 2 1 4 4 C 1.38225 * 120.01997 * 179.72159 * 3 2 1 5 5 C 1.38242 * 120.00669 * 0.54679 * 4 3 2 6 6 C 1.50703 * 120.00307 * 179.74868 * 5 4 3 7 7 N 1.46899 * 109.47107 * 259.72182 * 6 5 4 8 8 C 1.46904 * 111.00029 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.46800 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00575 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99722 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99976 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99994 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47320 * 89.99788 * 13 11 9 15 15 H 1.48495 * 109.47173 * 210.00032 * 13 11 9 16 16 H 1.48509 * 109.47110 * 329.99889 * 13 11 9 17 17 C 1.38301 * 119.99039 * 359.46909 * 5 4 3 18 18 Br 1.89100 * 120.01040 * 180.27194 * 17 5 4 19 19 C 1.38203 * 119.99527 * 180.02562 * 2 1 3 20 20 H 1.08997 * 109.47306 * 269.98445 * 1 2 3 21 21 H 1.09002 * 109.46740 * 29.98842 * 1 2 3 22 22 H 1.08998 * 109.46812 * 149.97843 * 1 2 3 23 23 H 1.07999 * 119.99177 * 359.97438 * 3 2 1 24 24 H 1.08000 * 119.99799 * 180.29096 * 4 3 2 25 25 H 1.09002 * 109.47152 * 139.72270 * 6 5 4 26 26 H 1.09001 * 109.46980 * 19.72370 * 6 5 4 27 27 H 1.00902 * 111.00582 * 303.95889 * 7 6 5 28 28 H 1.08995 * 109.47167 * 300.00240 * 8 7 6 29 29 H 1.09003 * 109.46442 * 60.00214 * 8 7 6 30 30 H 0.97008 * 119.99801 * 179.97438 * 12 11 9 31 31 H 1.07998 * 120.00353 * 0.02865 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1980 0.0058 5 6 4.2723 0.0012 0.0002 6 6 5.7794 0.0020 0.0008 7 7 6.2697 -0.2381 -1.3629 8 6 7.7382 -0.2436 -1.4010 9 6 8.2031 -0.4916 -2.8129 10 1 7.4800 -0.6308 -3.6030 11 6 9.5516 -0.5408 -3.0960 12 7 9.9574 -0.7577 -4.3281 13 14 10.8023 -0.3007 -1.7294 14 1 11.1342 -1.6160 -1.1254 15 1 12.0340 0.3125 -2.2878 16 1 10.2328 0.5924 -0.6885 17 6 3.5813 -1.1968 -0.0001 18 35 4.5272 -2.8342 0.0000 19 6 2.1979 -1.1969 -0.0005 20 1 -0.3634 -0.0003 1.0276 21 1 -0.3633 0.8901 -0.5137 22 1 -0.3633 -0.8898 -0.5142 23 1 1.6580 2.1326 -0.0004 24 1 4.1200 2.1336 0.0106 25 1 6.1429 -0.7851 0.6615 26 1 6.1420 0.9679 0.3526 27 1 5.8948 -1.0974 -1.7360 28 1 8.1141 0.7207 -1.0592 29 1 8.1156 -1.0322 -0.7500 30 1 10.9061 -0.7919 -4.5273 31 1 1.6579 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129592043.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:06 Heat of formation + Delta-G solvation = 18.973821 kcal Electronic energy + Delta-G solvation = -14159.536247 eV Core-core repulsion = 11679.588432 eV Total energy + Delta-G solvation = -2479.947815 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.56887 -35.77541 -33.29189 -32.17483 -31.85400 -29.27209 -28.76072 -26.39262 -23.48367 -22.60180 -21.08857 -20.59792 -16.93559 -16.09039 -15.83805 -15.03473 -14.55369 -14.34973 -13.94107 -13.62300 -13.47643 -12.98605 -12.54384 -12.50296 -12.22756 -11.80923 -11.64924 -11.24593 -11.04246 -10.71448 -10.64594 -10.45169 -9.96099 -9.80864 -9.27072 -8.80088 -8.58592 -8.48376 -7.47952 -6.03697 -4.01467 1.11997 1.28839 1.73772 3.30028 3.37244 3.39892 3.57874 4.43766 4.66029 4.76457 4.90003 5.09783 5.17513 5.28457 5.39704 5.43086 5.44317 5.61420 5.71252 5.84859 5.96121 6.09666 6.18232 6.42331 6.54539 6.77878 6.83728 7.02829 7.60808 7.87716 8.32181 8.66406 9.04676 9.57987 11.09647 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.025544 B = 0.005350 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.889583 B = 5232.653683 C = 5840.017119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.106 4.106 4 C -0.094 4.094 5 C -0.044 4.044 6 C 0.082 3.918 7 N -0.671 5.671 8 C 0.164 3.836 9 C -0.514 4.514 10 H 0.079 0.921 11 C 0.069 3.931 12 N -0.900 5.900 13 Si 0.877 3.123 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.267 1.267 17 C -0.085 4.085 18 Br -0.048 7.048 19 C -0.093 4.093 20 H 0.069 0.931 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.126 0.874 24 H 0.132 0.868 25 H 0.040 0.960 26 H 0.078 0.922 27 H 0.338 0.662 28 H 0.027 0.973 29 H -0.019 1.019 30 H 0.263 0.737 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.867 -0.644 12.528 21.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.125 4.125 4 C -0.114 4.114 5 C -0.047 4.047 6 C -0.047 4.047 7 N -0.303 5.303 8 C 0.037 3.963 9 C -0.553 4.553 10 H 0.097 0.903 11 C -0.133 4.133 12 N -0.539 5.539 13 Si 0.704 3.296 14 H -0.203 1.203 15 H -0.211 1.211 16 H -0.191 1.191 17 C -0.165 4.165 18 Br 0.038 6.962 19 C -0.113 4.113 20 H 0.088 0.912 21 H 0.086 0.914 22 H 0.085 0.915 23 H 0.144 0.856 24 H 0.150 0.850 25 H 0.058 0.942 26 H 0.096 0.904 27 H 0.157 0.843 28 H 0.045 0.955 29 H -0.001 1.001 30 H 0.073 0.927 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.366 -0.627 12.223 21.245 hybrid contribution 0.819 -0.399 0.987 1.343 sum -16.547 -1.026 13.210 21.198 Atomic orbital electron populations 1.20759 0.90806 1.02925 1.02256 1.19840 0.96135 0.92668 1.00704 1.21135 0.94177 0.97599 0.99571 1.21063 0.93839 0.97507 0.98954 1.19910 0.96610 0.91514 0.96631 1.21055 0.88651 1.01717 0.93311 1.60631 1.11082 1.42174 1.16375 1.20028 0.83148 0.95377 0.97770 1.21039 0.92738 1.48680 0.92803 0.90290 1.24889 0.98243 0.94753 0.95365 1.69903 1.15402 1.50028 1.18592 0.86832 0.81219 0.78779 0.82729 1.20322 1.21148 1.19134 1.21768 0.94607 0.91652 1.08426 1.96732 1.75639 1.26336 1.97531 1.20904 0.91810 0.98401 1.00162 0.91216 0.91379 0.91488 0.85621 0.84980 0.94206 0.90407 0.84332 0.95482 1.00092 0.92665 0.85351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.09 -1.02 5.88 -104.63 -0.62 -1.63 16 3 C -0.11 -1.20 9.70 -39.58 -0.38 -1.58 16 4 C -0.09 -1.25 9.67 -39.58 -0.38 -1.64 16 5 C -0.04 -0.68 5.40 -104.60 -0.56 -1.25 16 6 C 0.08 1.44 5.20 -4.98 -0.03 1.42 16 7 N -0.67 -14.53 6.48 -116.34 -0.75 -15.29 16 8 C 0.16 4.09 4.51 -4.98 -0.02 4.07 16 9 C -0.51 -15.04 9.87 -34.44 -0.34 -15.38 16 10 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 11 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 12 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 13 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 17 C -0.08 -1.24 6.21 -39.52 -0.25 -1.48 16 18 Br -0.05 -0.72 31.03 -68.01 -2.11 -2.83 16 19 C -0.09 -1.15 9.44 -39.56 -0.37 -1.53 16 20 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 21 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 22 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 23 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 24 H 0.13 1.59 8.03 -52.49 -0.42 1.16 16 25 H 0.04 0.70 7.15 -51.93 -0.37 0.33 16 26 H 0.08 1.30 8.00 -51.93 -0.42 0.88 16 27 H 0.34 7.37 7.67 -39.29 -0.30 7.06 16 28 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 29 H -0.02 -0.46 7.57 -51.93 -0.39 -0.85 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 283.46 15.07 4.27 4.27 Total: -1.00 -31.30 283.46 -9.15 -40.45 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -3.97 Total: 1.01 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -2.69 Total: -17.56 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.02 Total: -42.53 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Atomic # 35 Polarization: -0.72 SS G_CDS: -2.11 Total: -2.83 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.30 -9.15 -40.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129592043.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.423 kcal (2) G-P(sol) polarization free energy of solvation -31.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds