Wall clock time and date at job start Tue Mar 31 2020 05:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38259 * 119.99503 * 2 1 4 4 C 1.38225 * 120.01997 * 179.72159 * 3 2 1 5 5 C 1.38242 * 120.00669 * 0.54679 * 4 3 2 6 6 C 1.50703 * 120.00307 * 179.74868 * 5 4 3 7 7 N 1.46899 * 109.47107 * 259.72182 * 6 5 4 8 8 C 1.46904 * 111.00029 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.46800 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00575 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99722 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99976 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99994 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47320 * 89.99788 * 13 11 9 15 15 H 1.48495 * 109.47173 * 210.00032 * 13 11 9 16 16 H 1.48509 * 109.47110 * 329.99889 * 13 11 9 17 17 C 1.38301 * 119.99039 * 359.46909 * 5 4 3 18 18 Br 1.89100 * 120.01040 * 180.27194 * 17 5 4 19 19 C 1.38203 * 119.99527 * 180.02562 * 2 1 3 20 20 H 1.08997 * 109.47306 * 269.98445 * 1 2 3 21 21 H 1.09002 * 109.46740 * 29.98842 * 1 2 3 22 22 H 1.08998 * 109.46812 * 149.97843 * 1 2 3 23 23 H 1.07999 * 119.99177 * 359.97438 * 3 2 1 24 24 H 1.08000 * 119.99799 * 180.29096 * 4 3 2 25 25 H 1.09002 * 109.47152 * 139.72270 * 6 5 4 26 26 H 1.09001 * 109.46980 * 19.72370 * 6 5 4 27 27 H 1.00902 * 111.00582 * 303.95889 * 7 6 5 28 28 H 1.08995 * 109.47167 * 300.00240 * 8 7 6 29 29 H 1.09003 * 109.46442 * 60.00214 * 8 7 6 30 30 H 0.97008 * 119.99801 * 179.97438 * 12 11 9 31 31 H 1.07998 * 120.00353 * 0.02865 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1980 0.0058 5 6 4.2723 0.0012 0.0002 6 6 5.7794 0.0020 0.0008 7 7 6.2697 -0.2381 -1.3629 8 6 7.7382 -0.2436 -1.4010 9 6 8.2031 -0.4916 -2.8129 10 1 7.4800 -0.6308 -3.6030 11 6 9.5516 -0.5408 -3.0960 12 7 9.9574 -0.7577 -4.3281 13 14 10.8023 -0.3007 -1.7294 14 1 11.1342 -1.6160 -1.1254 15 1 12.0340 0.3125 -2.2878 16 1 10.2328 0.5924 -0.6885 17 6 3.5813 -1.1968 -0.0001 18 35 4.5272 -2.8342 0.0000 19 6 2.1979 -1.1969 -0.0005 20 1 -0.3634 -0.0003 1.0276 21 1 -0.3633 0.8901 -0.5137 22 1 -0.3633 -0.8898 -0.5142 23 1 1.6580 2.1326 -0.0004 24 1 4.1200 2.1336 0.0106 25 1 6.1429 -0.7851 0.6615 26 1 6.1420 0.9679 0.3526 27 1 5.8948 -1.0974 -1.7360 28 1 8.1141 0.7207 -1.0592 29 1 8.1156 -1.0322 -0.7500 30 1 10.9061 -0.7919 -4.5273 31 1 1.6579 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129592043.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:06 Heat of formation + Delta-G solvation = -1.038239 kcal Electronic energy + Delta-G solvation = -14160.404035 eV Core-core repulsion = 11679.588432 eV Total energy + Delta-G solvation = -2480.815603 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.56962 -37.31891 -34.94068 -33.74460 -33.00352 -30.38002 -30.17153 -27.87375 -24.82586 -23.60597 -23.04023 -21.62656 -19.03733 -17.41798 -16.90255 -16.41322 -15.92478 -15.89643 -15.51151 -14.71936 -14.46394 -14.40040 -14.27234 -13.62683 -13.30960 -13.25452 -12.87549 -12.68177 -12.54376 -12.05706 -11.98468 -11.82444 -11.70670 -11.46789 -11.13295 -10.82546 -9.79918 -9.53031 -9.17127 -8.30709 -6.35492 0.12139 0.30988 0.65781 1.34333 1.36124 1.47650 2.33564 2.59163 3.03219 3.58204 3.75772 3.85826 4.00607 4.20725 4.31213 4.47117 4.59432 4.69020 4.77943 4.85586 4.89405 4.95781 5.04018 5.21158 5.27366 5.46759 5.51600 5.55338 5.88533 5.93421 6.49539 6.58973 6.72372 7.29072 8.86194 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.025544 B = 0.005350 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.889583 B = 5232.653683 C = 5840.017119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.085 4.085 3 C -0.104 4.104 4 C -0.101 4.101 5 C -0.072 4.072 6 C 0.086 3.914 7 N -0.680 5.680 8 C 0.175 3.825 9 C -0.529 4.529 10 H 0.034 0.966 11 C 0.010 3.990 12 N -0.947 5.947 13 Si 0.951 3.049 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.248 1.248 17 C -0.098 4.098 18 Br -0.063 7.063 19 C -0.101 4.101 20 H 0.085 0.915 21 H 0.082 0.918 22 H 0.073 0.927 23 H 0.158 0.842 24 H 0.141 0.859 25 H 0.039 0.961 26 H 0.085 0.915 27 H 0.334 0.666 28 H 0.031 0.969 29 H -0.015 1.015 30 H 0.268 0.732 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.160 0.353 14.450 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.087 4.087 3 C -0.122 4.122 4 C -0.121 4.121 5 C -0.074 4.074 6 C -0.043 4.043 7 N -0.311 5.311 8 C 0.047 3.953 9 C -0.567 4.567 10 H 0.053 0.947 11 C -0.188 4.188 12 N -0.587 5.587 13 Si 0.774 3.226 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.171 1.171 17 C -0.178 4.178 18 Br 0.023 6.977 19 C -0.120 4.120 20 H 0.104 0.896 21 H 0.101 0.899 22 H 0.092 0.908 23 H 0.175 0.825 24 H 0.159 0.841 25 H 0.057 0.943 26 H 0.104 0.896 27 H 0.152 0.848 28 H 0.049 0.951 29 H 0.003 0.997 30 H 0.077 0.923 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.689 0.375 14.158 23.449 hybrid contribution 1.052 -0.696 0.328 1.303 sum -17.637 -0.321 14.487 22.826 Atomic orbital electron populations 1.20847 0.88115 1.04064 1.03597 1.20295 0.98034 0.91946 0.98383 1.21509 0.93435 0.99132 0.98121 1.21275 0.95010 0.97062 0.98726 1.19792 0.95263 0.92795 0.99599 1.21041 0.90552 1.01905 0.90759 1.60531 1.09102 1.41987 1.19457 1.19775 0.85333 0.95335 0.94851 1.21292 0.92449 1.48885 0.94055 0.94727 1.25866 1.00599 0.94125 0.98174 1.70056 1.16238 1.51239 1.21177 0.85664 0.78065 0.79462 0.79439 1.19257 1.20392 1.17136 1.21889 0.95524 0.90854 1.09484 1.96704 1.76205 1.27185 1.97622 1.21178 0.91005 0.99895 0.99956 0.89612 0.89912 0.90772 0.82486 0.84079 0.94326 0.89615 0.84777 0.95108 0.99733 0.92294 0.83863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.01 71.24 0.71 -0.57 16 2 C -0.09 -1.63 5.88 -19.87 -0.12 -1.75 16 3 C -0.10 -2.03 9.70 22.27 0.22 -1.81 16 4 C -0.10 -2.52 9.67 22.27 0.22 -2.30 16 5 C -0.07 -2.17 5.40 -19.85 -0.11 -2.28 16 6 C 0.09 3.00 5.20 85.56 0.44 3.44 16 7 N -0.68 -29.67 6.48 -521.98 -3.38 -33.05 16 8 C 0.18 8.72 4.51 85.55 0.39 9.11 16 9 C -0.53 -31.71 9.87 25.60 0.25 -31.45 16 10 H 0.03 2.31 8.06 -2.91 -0.02 2.29 16 11 C 0.01 0.59 5.47 84.66 0.46 1.06 16 12 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 13 Si 0.95 44.79 27.47 68.60 1.88 46.67 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 16 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 17 C -0.10 -2.79 6.21 22.31 0.14 -2.65 16 18 Br -0.06 -1.87 31.03 -20.37 -0.63 -2.50 16 19 C -0.10 -2.32 9.44 22.29 0.21 -2.11 16 20 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 21 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 22 H 0.07 0.79 8.08 -2.39 -0.02 0.78 16 23 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 24 H 0.14 3.13 8.03 -2.91 -0.02 3.11 16 25 H 0.04 1.34 7.15 -2.39 -0.02 1.33 16 26 H 0.09 2.78 8.00 -2.39 -0.02 2.76 16 27 H 0.33 14.92 7.67 -89.69 -0.69 14.24 16 28 H 0.03 1.51 7.20 -2.39 -0.02 1.49 16 29 H -0.01 -0.73 7.57 -2.39 -0.02 -0.75 16 30 H 0.27 15.81 8.31 -92.70 -0.77 15.04 16 31 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -68.59 283.46 1.37 -67.22 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.38 Total: 12.93 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 2.82 Total: -31.32 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -3.08 Total: -93.00 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Atomic # 35 Polarization: -1.87 SS G_CDS: -0.63 Total: -2.50 kcal Total: -68.59 1.37 -67.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129592043.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.184 kcal (2) G-P(sol) polarization free energy of solvation -68.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds