Wall clock time and date at job start Tue Mar 31 2020 05:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86802 * 119.99897 * 2 1 4 4 H 1.48501 * 109.47360 * 269.99922 * 3 2 1 5 5 H 1.48500 * 109.46819 * 29.99831 * 3 2 1 6 6 H 1.48499 * 109.47201 * 149.99716 * 3 2 1 7 7 C 1.38803 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99649 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00003 * 180.02562 * 7 2 1 10 10 C 1.81006 * 99.99815 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47326 * 180.02562 * 10 9 7 12 12 O 1.21290 * 119.99839 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00496 * 179.97438 * 11 10 9 14 14 C 1.47068 * 121.09081 * 179.97438 * 13 11 10 15 15 C 1.53006 * 108.94904 * 115.15160 * 14 13 11 16 16 C 1.52249 * 109.18082 * 46.95356 * 15 14 13 17 17 C 1.39291 * 123.33228 * 160.91168 * 16 15 14 18 18 C 1.32909 * 115.76009 * 179.74572 * 17 16 15 19 19 S 1.75741 * 109.57228 * 0.06233 * 18 17 16 20 20 C 1.34632 * 123.15188 * 340.86844 * 16 15 14 21 21 C 1.47181 * 121.07364 * 359.97438 * 13 11 10 22 22 H 0.96994 * 120.00293 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47246 * 59.99948 * 10 9 7 24 24 H 1.09001 * 109.46842 * 300.00249 * 10 9 7 25 25 H 1.09000 * 109.56044 * 355.30652 * 14 13 11 26 26 H 1.09004 * 109.55239 * 234.98773 * 14 13 11 27 27 H 1.09001 * 109.51575 * 166.86473 * 15 14 13 28 28 H 1.08997 * 109.52023 * 286.98093 * 15 14 13 29 29 H 1.08003 * 122.12252 * 359.74595 * 17 16 15 30 30 H 1.07997 * 125.20987 * 180.02562 * 18 17 16 31 31 H 1.08998 * 109.80606 * 104.14965 * 21 13 11 32 32 H 1.08996 * 109.91855 * 343.22213 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2019 0.0012 10 6 4.0868 -2.9844 0.0009 11 6 5.5731 -3.2324 0.0021 12 8 6.3441 -2.2961 0.0035 13 7 6.0459 -4.4946 0.0026 14 6 7.4917 -4.7640 0.0032 15 6 7.8670 -5.4593 1.3135 16 6 6.8780 -6.5849 1.5836 17 6 7.1376 -7.6387 2.4567 18 6 6.1658 -8.5365 2.5835 19 16 4.8092 -8.0838 1.5621 20 6 5.6665 -6.6561 1.0008 21 6 5.1318 -5.6481 0.0027 22 1 -0.4850 0.8400 -0.0004 23 1 3.6442 -3.4313 -0.8893 24 1 3.6434 -3.4317 0.8907 25 1 8.0380 -3.8246 -0.0809 26 1 7.7426 -5.4105 -0.8378 27 1 8.8733 -5.8703 1.2324 28 1 7.8326 -4.7391 2.1308 29 1 8.0694 -7.7211 2.9964 30 1 6.2043 -9.4105 3.2166 31 1 5.0993 -6.0936 -0.9916 32 1 4.1321 -5.3298 0.2980 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134191384.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:47 Heat of formation + Delta-G solvation = -0.019110 kcal Electronic energy + Delta-G solvation = -17177.647571 eV Core-core repulsion = 14356.100423 eV Total energy + Delta-G solvation = -2821.547147 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.13770 -38.25863 -35.48900 -32.44557 -32.13612 -30.41809 -29.11484 -25.69141 -25.36768 -24.24518 -21.98707 -20.16193 -18.21948 -17.70096 -17.27974 -16.48937 -15.95921 -15.53217 -15.11182 -14.95619 -14.38466 -13.92229 -13.62878 -13.31586 -13.16708 -13.02758 -12.79113 -12.76511 -12.13353 -11.86073 -11.71942 -11.39513 -11.26253 -11.01291 -10.81680 -10.60081 -9.86696 -9.56624 -9.01162 -8.89968 -8.67387 -8.50527 -8.48923 -6.93219 -6.29416 -4.01483 0.77375 1.36040 1.77372 2.45425 2.67843 2.87591 3.16493 3.32862 3.50178 3.57115 4.32387 4.40975 4.55816 4.60778 4.83778 4.96519 5.04641 5.09692 5.10137 5.19019 5.20831 5.40230 5.47027 5.70961 5.72505 5.81588 5.87098 5.96000 6.11266 6.30383 6.41658 7.37761 7.93555 8.36068 8.41011 9.16724 10.79812 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.028092 B = 0.004147 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.499099 B = 6751.056140 C = 7467.580307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.539 3.461 12 O -0.515 6.515 13 N -0.616 5.616 14 C 0.113 3.887 15 C -0.073 4.073 16 C -0.095 4.095 17 C -0.128 4.128 18 C -0.215 4.215 19 S 0.114 5.886 20 C -0.201 4.201 21 C 0.183 3.817 22 H 0.271 0.729 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.138 0.862 30 H 0.165 0.835 31 H 0.087 0.913 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.873 -18.229 2.682 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.274 4.274 11 C 0.327 3.673 12 O -0.389 6.389 13 N -0.353 5.353 14 C -0.010 4.010 15 C -0.113 4.113 16 C -0.108 4.108 17 C -0.159 4.159 18 C -0.351 4.351 19 S 0.379 5.621 20 C -0.319 4.319 21 C 0.058 3.942 22 H 0.081 0.919 23 H 0.116 0.884 24 H 0.116 0.884 25 H 0.118 0.882 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.155 0.845 30 H 0.182 0.818 31 H 0.105 0.895 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.394 -17.370 2.397 22.065 hybrid contribution 0.477 -0.019 0.450 0.656 sum 13.871 -17.388 2.847 22.425 Atomic orbital electron populations 1.69935 1.05913 1.27783 1.48028 1.24702 0.94433 0.98936 0.93141 0.86745 0.81914 0.83308 0.79953 1.19178 1.19919 1.15919 1.22307 0.88194 0.97558 1.58856 0.89367 1.84790 1.09379 0.99846 1.97411 1.23331 0.93922 1.04517 1.05662 1.20265 0.90725 0.81467 0.74878 1.90695 1.58753 1.41328 1.48091 1.48081 1.06555 1.05189 1.75446 1.21513 0.81222 1.01634 0.96632 1.20914 0.96904 0.94711 0.98780 1.19528 0.95114 0.97596 0.98530 1.20050 1.00686 0.94499 1.00638 1.25390 0.97696 1.05257 1.06741 1.84225 1.18696 1.18866 1.40309 1.25066 0.98872 1.01790 1.06200 1.20289 0.93766 0.83816 0.96368 0.91924 0.88415 0.88449 0.88174 0.91075 0.89586 0.89971 0.84454 0.81783 0.89533 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.51 13.97 55.49 0.78 -25.74 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.75 27.74 -169.99 -4.72 17.04 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 7 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 8 H 0.09 2.64 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 10 C -0.12 -2.42 4.58 36.00 0.16 -2.26 16 11 C 0.54 9.79 7.73 -10.99 -0.08 9.71 16 12 O -0.51 -11.07 15.32 5.55 0.08 -10.98 16 13 N -0.62 -8.59 2.95 -173.52 -0.51 -9.10 16 14 C 0.11 1.30 6.35 -3.73 -0.02 1.27 16 15 C -0.07 -0.73 6.32 -27.11 -0.17 -0.90 16 16 C -0.10 -1.02 5.80 -104.74 -0.61 -1.63 16 17 C -0.13 -1.19 9.99 -41.03 -0.41 -1.60 16 18 C -0.22 -1.88 11.20 28.89 0.32 -1.55 16 19 S 0.11 1.10 23.32 -107.50 -2.51 -1.40 16 20 C -0.20 -2.25 6.44 -35.14 -0.23 -2.47 16 21 C 0.18 2.11 6.62 -4.38 -0.03 2.08 16 22 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.10 1.76 8.12 -51.92 -0.42 1.34 16 24 H 0.10 1.80 7.57 -51.92 -0.39 1.41 16 25 H 0.10 1.27 7.03 -51.93 -0.37 0.90 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 30 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.10 1.20 6.25 -51.93 -0.32 0.87 16 LS Contribution 297.35 15.07 4.48 4.48 Total: -1.00 -33.35 297.35 -8.85 -42.21 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -3.62 Total: -1.63 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -0.85 Total: -9.31 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.26 Total: -34.83 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.72 Total: 17.04 kcal Atomic # 16 Polarization: -2.47 SS G_CDS: -4.50 Total: -6.97 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.35 -8.85 -42.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134191384.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.186 kcal (2) G-P(sol) polarization free energy of solvation -33.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds